Opal and CODEX multiplexed tissue imaging data shows infiltration of proliferative CD8+ T-cells to the rejected SCCs.
Differentially expressed genes in tumor compartment at days 0, 6, 10, and 16 post-inoculation.
CellChat and CellPhoneDB analyses reveal increased MIF signaling from tumor cells to macrophages in non-rejected clones.
Immunopeptidomics and TCR sequencing analyses showed similar results for the rejected and non-rejected SCCs.
Cell types from scRNA-seq of tumors from mice inoculated with rejected or non-rejected SCCs.
CyTOF analysis comparing tumors derived from Mif WT and Mif KO validating the scRNAseq findings.
Rejection and non-rejection gene sets identified in the scRNA sequencing analysis can stratify patients with high/low ITH and hot/cold tumor annotations.