As wildfire regimes shift, resource managers are concerned about potential threats to aquatic ecosystems and the species they support, especially fishes. However, predicting fish responses can be challenging because wildfires affect aquatic ecosystems via multiple pathways. Application of whole-ecosystem approaches, such as food web modeling, can act as heuristic tools that offer valuable insights that account for these different mechanisms. We applied a dynamic food web simulation model that mechanistically linked stream trophic dynamics to the myriad effects that wildfires can have on aquatic and riparian ecosystems at a local stream reach-scale. We simulated how wildfires of different severity may influence short- (months to years) and long-term (years to decades) periphyton, aquatic invertebrate, and fish biomass dynamics in forested headwater streams of the western Pacific Northwest (USA). In many cases, wildfire increased modeled periphyton, invertebrate, and fish biomass over both short- and long-time periods. However, modeled responses varied extensively in their direction (that is, positive or negative), magnitude, and duration depending on fire severity, time since fire, and trophic level. The shapes of these response trajectories were especially sensitive to predicted wildfire effects on water temperature, canopy cover, riparian shading, and instream turbidity. Model simulations suggest a single fire could result in a wide range of aquatic ecosystem responses, especially in watersheds with mixed burn severity. Our analysis highlights the utility of whole-ecosystem approaches, like food web modeling, as heuristic tools for improving our understanding of the mechanisms linking fire, food webs, and fish and for identifying contexts where fires could have deleterious impacts on fishes.

Aim:Freshwater fishes comprise over 20% of vertebrate biodiversity despite occupying <1% of the Earth's surface. However, species richness differs substantially among river basins. Fundamentally, richness patterns can be explained by spatial variation in diversification rates, evolutionary time, and habitat capacities, which are in turn shaped by landscape change over geologic timescales. To test how geologic disturbances have influenced the accumulation of freshwater fish biodiversity, we hypothesized species richness would be (1) ordered by regional geologic history, (2) associated with high or intermediate river capture rates, (3) higher in assemblages with older evolutionary origins, and (4) positively associated with stream size. Time Period:2008-2019. Location:Conterminous United States (USA). Major Taxa:Freshwater fishes. Methods:We analyzed native species richness from a spatially representative survey of 5,321 fish assemblages at 3,609 sites. Geologic history was determined from surrogates of tectonic activity, glaciation, sea levels, and river capture over the last 66 million years, which were paired with previously published evolutionary time estimates. Hypotheses were tested with spatial linear models. Results:All hypotheses were at least partially supported. (1) Rank-order richness matched hypothesized effects of geologic disturbances on evolutionary time and diversification rates. (2) Richness peaked in lowlands with high putative river capture rates. (3) Richness increased with evolutionary time at broad scales, but this relationship was weak and influenced by non-teleost taxa. (4) Richness largely increased with stream size.Overall, the tectonically active western USA exhibited lower richness, weaker effects of stream size, and a greater share of young lineages compared to the more geologically stable eastern USA, especially unglaciated lowlands within the Mississippi Basin. Main Conclusions:We demonstrate that deep-time processes leave a persistent mark on fish species richness. Thus, accounting for geologic history can improve assessments of freshwater biodiversity and biological condition in the USA and beyond.

Wildfires are increasing in severity, frequency and size, potentially threatening freshwater species that adapted under different disturbance regimes. However, few wildfire studies have comprehensively evaluated freshwater populations and assemblages following wildfire over broad spatial scales while accounting for post-fire salvage practices in the watershed. We reveal that stream vertebrate assemblages across thirty 4th order streams, spanning a range of both watershed fire severity and post-fire forest management extent, were minimally influenced by immediate effects of fire alone (absent of channel reorganization events). Greater total taxa, total fish, and adult trout densities were associated with streams draining more severely burned watersheds, whereas sculpin, amphibian and crayfish densities appeared uninfluenced by burn severity. Greater extent of post-fire watershed salvage practices was negatively associated with frog densities and positively with young-of-year trout and crayfish densities. Our findings indicate fishes thrive, and amphibians and crayfish persist despite experiencing high-severity megafires in the western Cascades of Oregon.

Human activities and climate change threaten coldwater organisms in freshwater ecosystems by causing rivers and streams to warm, increasing the intensity and frequency of warm temperature events, and reducing thermal heterogeneity. Cold-water refuges are discrete patches of relatively cool water that are used by coldwater organisms for thermal relief and short-term survival. Globally, cohesive management approaches are needed that consider interlinked physical, biological, and social factors of cold-water refuges. We review current understanding of cold-water refuges, identify gaps between science and management, and evaluate policies aimed at protecting thermally sensitive species. Existing policies include designating cold-water habitats, restricting fishing during warm periods, and implementing threshold temperature standards or guidelines. However, these policies are rare and uncoordinated across spatial scales and often do not consider input from Indigenous peoples. We propose that cold-water refuges be managed as distinct operational landscape units, which provide a social and ecological context that is relevant at the watershed scale. These operational landscape units provide the foundation for an integrated framework that links science and management by (1) mapping and characterizing cold-water refuges to prioritize management and conservation actions, (2) leveraging existing and new policies, (3) improving coordination across jurisdictions, and (4) implementing adaptive management practices across scales. Our findings show that while there are many opportunities for scientific advancement, the current state of the sciences is sufficient to inform policy and management. Our proposed framework provides a path forward for managing and protecting cold-water refuges using existing and new policies to protect coldwater organisms in the face of global change.

Channel dimensions (width and depth) at varying flows influence a host of instream ecological processes, as well as habitat and biotic features; they are a major consideration in stream habitat restoration and instream flow assessments. Models of widths and depths are often used to assess climate change vulnerability, develop endangered species recovery plans, and model water quality. However, development and application of such models require specific skillsets and resources. To facilitate acquisition of such estimates, we created a dataset of modeled channel dimensions for perennial stream segments across the conterminous United States. We used random forest models to predict wetted width, thalweg depth, bankfull width, and bankfull depth from several thousand field measurements of the National Rivers and Streams Assessment. Observed channel widths varied from <5 to >2000 m and depths varied from <2 to >125 m. Metrics of watershed area, runoff, slope, land use, and more were used as model predictors. The models had high pseudo R2 values (0.70–0.91) and median absolute errors within ±6% to ±21% of the interquartile range of measured values across 10 stream orders. Predicted channel dimensions can be joined to 1.1 million stream segments of the 1:100 K resolution National Hydrography Dataset Plus (version 2.1). These predictions, combined with a rapidly growing body of nationally available data, will further enhance our ability to study and protect aquatic resources.

Mining provides resources for people but can pose risks to ecosystems that support cultural keystone species. Our synthesis reviews relevant aspects of mining operations, describes the ecology of salmonid-bearing watersheds in northwestern North America, and compiles the impacts of metal and coal extraction on salmonids and their habitat. We conservatively estimate that this region encompasses nearly 4000 past producing mines, with present-day operations ranging from small placer sites to massive open-pit projects that annually mine more than 118 million metric tons of earth. Despite impact assessments that are intended to evaluate risk and inform mitigation, mines continue to harm salmonid-bearing watersheds via pathways such as toxic contaminants, stream channel burial, and flow regime alteration. To better maintain watershed processes that benefit salmonids, we highlight key windows during the mining governance life cycle for science to guide policy by more accurately accounting for stressor complexity, cumulative effects, and future environmental change.

The importance of thermal refuges in a rapidly warming world is particularly evident for migratory species, where individuals encounter a wide range of conditions throughout their lives. In this study, we used a spatially explicit, individual-based simulation model to evaluate the buffering potential of cold-water thermal refuges for anadromous salmon and trout ( Oncorhynchus spp.) migrating upstream through a warm river corridor that can expose individuals to physiologically stressful temperatures. We considered upstream migration in relation to migratory phenotypes that were defined in terms of migration timing, spawn timing, swim speed, and use of cold-water thermal refuges. Individuals with different migratory phenotypes migrated upstream through riverine corridors with variable availability of cold-water thermal refuges and mainstem temperatures. Use of cold-water refuges (CWRs) decreased accumulated sublethal exposures to physiologically stressful temperatures when measured in degree-days above 20, 21, and 22°C. The availability of CWRs was an order of magnitude more effective in lowering accumulated sublethal exposures under current and future mainstem temperatures for summer steelhead than fall Chinook Salmon. We considered two emergent model outcomes, survival and percent of available energy used, in relation to thermal heterogeneity and migratory phenotype. Mean percent energy loss attributed to future warmer mainstem temperatures was at least two times larger than the difference in energy used in simulations without CWRs for steelhead and salmon. We also found that loss of CWRs reduced the diversity of energy-conserving migratory phenotypes when we examined the variability in entry timing and travel time outside of CWRs in relation to energy loss. Energy-conserving phenotypic space contracted by 7%–23% when CWRs were unavailable under the current thermal regime. Our simulations suggest that, while CWRs do not entirely mitigate for stressful thermal exposures in mainstem rivers, these features are important for maintaining a diversity of migration phenotypes. Our study suggests that the maintenance of diverse portfolios of migratory phenotypes and cool- and cold-water refuges might be added to the suite of policies and management actions presently being deployed to improve the likelihood of Pacific salmonid persistence into a future characterized by climate change.

Diadromous fish populations face multiple challenges along their migratory routes. These challenges include suboptimal water quality, harvest, and barriers to longitudinal and lateral connectivity. Interactions among factors influencing migration success make it challenging to assess management options for improving migratory fish conditions along riverine migration corridors. We describe a spatially explicit simulation model that integrates complex individual behaviors of fall-run Chinook Salmon (Oncorhynchus tshawytscha) and summer-run steelhead trout (O. mykiss) during migration, responds to variable habitat conditions over a large extent of the Columbia River, and links migration corridor conditions to fish condition outcomes. The model is built around a mechanistic behavioral decision tree that drives individual interactions of fish within their simulated environments. By simulating several thermalscapes with alternative scenarios of thermal refuge availability, we examined how behavioral thermoregulation in cold-water refuges influenced migrating fish conditions. Outcomes of the migration corridor simulation model show that cold-water refuges can provide relief from exposure to high water temperatures, but do not substantially contribute to energy conservation by migrating adults. Simulated cooling of the Columbia River decreased reliance on cold-water refuges and there were slight reductions in migratory energy expenditure. This modeling of simulated thermalscapes provides a framework for assessing the contribution of cold-water refuges to the success of migrating fishes, but any final determination will depend on analyzing fish survival and health for their entire migration, water temperature management goals and species recovery targets.

Recent increases in the burn area and severity of wildfires in the western US have raised concerns about the impact on stream water temperature–a key determinant of cold-water fish habitats. However, the effect on seasonal water temperatures of concern, including winter and summer, are not fully understood. In this study, we assessed the impact of wildfire burns at Boulder Creek (Oregon), Elk Creek (Oregon), and Gibbon River (Wyoming) watersheds on the downstream winter and summer water temperatures for the first three post-fire years. To obtain results independent of the choice of the analytical method, we evaluated the consequence of each burn using three different statistical approaches that utilize local water temperature data. Our results from the three approaches indicated that the response of water temperatures to wildfire burns varied across seasons and sites. Wildfire burns were associated with a median increase of up to 0.56°C (Standard Error; S.E. < 0.23°C) in the summer mean water temperatures (MWT) and 62 degree-day Celsius (DDC; S.E. < 20.7 DDC) in the summer accumulated degree days (ADD) for the three subsequent years across studied stream sites. Interestingly, these burns also corresponded to a median decrease of up to 0.49°C (S.E. < 0.45°C) in the winter MWT and 39 DDC (S.E. < 40.5 DDC) in the winter ADD for the same period across sites. Wildfire effects on the downstream water temperatures diminished with increasing site distance from the burn perimeter. Our analyses demonstrated that analytical methods that utilize local watershed data could be applied to evaluate fire effects on downstream water temperatures.

A common goal of biological adaptation planning is to identify and prioritize locations that remain suitably cool during the summer. This implicitly devalues areas that are ephemerally warm, even if they are suitable most of the year for mobile animals. Here we develop an alternative conceptual framework, the growth regime, which considers seasonal and landscape variation in physiological performance, focusing on riverine fish. Using temperature models for 14 river basins, we show that growth opportunities propagate up and down river networks on a seasonal basis, and that downstream habitats that are suboptimally warm in summer may actually provide the majority of growth potential expressed annually. We demonstrate with an agent-based simulation that the shoulder-season use of warmer downstream habitats can fuel annual fish production. Our work reveals a synergy between cold and warm habitats that could be fundamental to support cold-water fisheries, and highlights the risk in conservation strategies that underappreciate warm habitats. Modelling riverine fish growth across warm and cool sections of a river network, the authors demonstrate that habitats that are suboptimally warm in summer may actually provide the majority of growth potential. This highlights a risk in conservation strategies that devalue ephemerally warm habitats.

Abstract Wildfires in many western North American forests are becoming more frequent, larger, and severe, with changed seasonal patterns. In response, coniferous forest ecosystems will transition toward dominance by fire‐adapted hardwoods, shrubs, meadows, and grasslands, which may benefit some faunal communities, but not others. We describe factors that limit and promote faunal resilience to shifting wildfire regimes for terrestrial and aquatic ecosystems. We highlight the potential value of interspersed nonforest patches to terrestrial wildlife. Similarly, we review watershed thresholds and factors that control the resilience of aquatic ecosystems to wildfire, mediated by thermal changes and chemical, debris, and sediment loadings. We present a 2‐dimensional life history framework to describe temporal and spatial life history traits that species use to resist wildfire effects or to recover after wildfire disturbance at a metapopulation scale. The role of fire refuge is explored for metapopulations of species. In aquatic systems, recovery of assemblages postfire may be faster for smaller fires where unburned tributary basins or instream structures provide refuge from debris and sediment flows. We envision that more‐frequent, lower‐severity fires will favor opportunistic species and that less‐frequent high‐severity fires will favor better competitors. Along the spatial dimension, we hypothesize that fire regimes that are predictable and generate burned patches in close proximity to refuge will favor species that move to refuges and later recolonize, whereas fire regimes that tend to generate less‐severely burned patches may favor species that shelter in place. Looking beyond the trees to forest fauna, we consider mitigation options to enhance resilience and buy time for species facing a no‐analog future.

Under a warmer future climate, thermal refuges could facilitate the persistence of species relying on cold-water habitat. Often these refuges are small and easily missed or smoothed out by averaging in models. Thermal infrared (TIR) imagery can provide empirical water surface temperatures that capture these features at a high spatial resolution (<1 m) and over tens of kilometers. Our study examined how TIR data could be used along with spatial stream network (SSN) models to characterize thermal regimes spatially in the Middle Fork John Day (MFJD) River mainstem (Oregon, USA). We characterized thermal variation in seven TIR longitudinal temperature profiles along the MFJD mainstem and compared them with SSN model predictions of stream temperature (for the same time periods as the TIR profiles). TIR profiles identified reaches of the MFJD mainstem with consistently cooler temperatures across years that were not consistently captured by the SSN prediction models. SSN predictions along the mainstem identified ~80% of the 1-km reach scale temperature warming or cooling trends observed in the TIR profiles. We assessed whether landscape features (e.g., tributary junctions, valley confinement, geomorphic reach classifications) could explain the fine-scale thermal heterogeneity in the TIR profiles (after accounting for the reach-scale temperature variability predicted by the SSN model) by fitting SSN models using the TIR profile observation points. Only the distance to the nearest upstream tributary was identified as a statistically significant landscape feature for explaining some of the thermal variability in the TIR profile data. When combined, TIR data and SSN models provide a data-rich evaluation of stream temperature captured in TIR imagery and a spatially extensive prediction of the network thermal diversity from the outlet to the headwaters.

Climate-change adaptation focuses on conducting and translating research to minimize the dire impacts of anthropogenic climate change, including threats to biodiversity and human welfare. One adaptation strategy is to focus conservation on climate-change refugia (that is, areas relatively buffered from contemporary climate change over time that enable persistence of valued physical, ecological, and sociocultural resources). In this Special Issue, recent methodological and conceptual advances in refugia science will be highlighted. Advances in this emerging subdiscipline are improving scientific understanding and conservation in the face of climate change by considering scale and ecosystem dynamics, and looking beyond climate exposure to sensitivity and adaptive capacity. We propose considering refugia in the context of a multifaceted, long-term, network-based approach, as temporal and spatial gradients of ecological persistence that can act as "slow lanes" rather than areas of stasis. After years of discussion confined primarily to the scientific literature, researchers and resource managers are now working together to put refugia conservation into practice.

Dam operations can affect mixing of the water column thereby influencing thermal heterogeneity spatially and temporally. This occurs by restricting or eliminating connectivity in longitudinal, lateral, vertical and temporal dimensions. We examined thermal heterogeneity across space and time and identified potential cold-water refuges for salmonids in a large impounded river in inland northwestern USA. To describe these patterns, we used thermal infrared (TIR) imagery, in situ thermographs, and high-resolution 3-D hydraulic mapping. We explained the median water temperature and probability of occurrence of cool-water areas using generalized additive models (GAMs) at reach and sub-catchment scales, and we evaluated potential cold-water refuge occurrence in relation to these patterns. We demonstrated that (1) lateral contributions from tributaries dominated thermal heterogeneity; (2) thermal variability at confluences was approximately an order of magnitude greater than of the main stem; (3) potential cold-water refuges were mostly found at confluences; and (4) the probability of occurrence of cool areas and median water temperature were associated with channel geomorphology and distance from dam. These findings highlight the importance of using multiple approaches to describe thermal heterogeneity in large impounded rivers and the need to incorporate these types of rivers in the understanding of thermal riverscapes because of their limited representation in the literature.

Within the context of climate adaptation, the concept of climate refugia has emerged as a framework for addressing future threats to freshwater fish populations. We evaluated recent climate-refugia management associated with water use and landscape modification by comparing efforts in the US states of Oregon and Massachusetts, for which there are contrasting resource use patterns. Using these examples, we discuss tools and principles that can be applied more broadly. Although many early efforts to identify climate refugia have focused on water temperature, substantial gains in evaluating other factors and processes regulating climate refugia (eg stream flow, groundwater availability) are facilitating refined mapping of refugia and assessment of their ecological value. Major challenges remain for incorporating climate refugia into water-quality standards, evaluating trade-offs among policy options, addressing multiple species' needs, and planning for uncertainty. However, with a procedurally transparent and conceptually sound framework to build upon, recent efforts have revealed a promising path forward.

In the original publication of the article, the third author name has been misspelt. The correct name is given in this Correction. The original version of this article was revised.

Watershed integrity, the capacity of a watershed to support and maintain ecological processes essential to the sustainability of services provided to society, can be influenced by a range of landscape and in-stream factors. Ecological response data from four intensively monitored case study watersheds exhibiting a range of environmental conditions and landscape characteristics across the United States were used to evaluate the performance of a national level Index of Watershed Integrity (IWI) at regional and local watershed scales. Using Pearson's correlation coefficient (r), and Spearman's rank correlation coefficient (rs ), response variables displayed highly significant relationships and were significantly correlated with IWI and ICI (Index of Catchment Integrity) values at all watersheds. Nitrogen concentration and flux-related watershed response metrics exhibited significantly strong negative correlations across case study watersheds, with absolute correlations (|r|) ranging from 0.48 to 0.97 for IWI values, and 0.31 to 0.96 for ICI values. Nitrogen-stable isotope ratios measured in chironomids and periphyton from streams and benthic organic matter from lake sediments also demonstrated strong negative correlations with IWI values, with |r| ranging from 0.47 to 0.92, and 0.35 to 0.89 for correlations with ICI values. This evaluation of the performance of national watershed and catchment integrity metrics and their strong relationship with site level responses provides weight-of-evidence support for their use in state, local and regionally focused applications.