Abstract Physiological traits may play a key role in the establishment of non-native species in a new habitat. Still, there are few empirical studies that link physiological traits with invasion success. The American bullfrog, Rana catesbeianus, and the green frog, R. clamitans, are functionally and morphologically similar congeners that largely occupy the same native range in the eastern United States, but have drastically different invasion histories. Bullfrogs have established in much of the western United States, which is generally much hotter and drier than their native range. We hypothesized that intrinsic differences in heat and desiccation tolerance in the tadpole stage may explain the contrasting invasion histories of the two species. We tested this hypothesis by measuring critical thermal maximum (CTMAX), thermal acclimation capacity, and hydric stress tolerance in bullfrog and green frog tadpoles occurring in their native habitat. We found that species do not have intrinsic differences in thermal tolerance, but bullfrog tadpoles have slightly greater thermal acclimation capacity than green frogs. Green frogs are more sensitive to warmer temperatures but can withstand greater hydric stress. In addition to being stronger competitors, we surmise that other factors, such as rapid evolution of thermal tolerance or combinations of responses to novel abiotic and biotic conditions may ultimately predispose bullfrog tadpoles to successfully persist in hotter and drier habitats in the western U.S.

Understanding the evolutionary consequences of anthropogenic change is imperative for estimating long-term species resilience. While contemporary genomic data can provide us with important insights into recent demographic histories, investigating past change using present genomic data alone has limitations. In comparison, temporal genomics studies, defined herein as those that incorporate time series genomic data, utilize museum collections and repeated field sampling to directly examine evolutionary change. As temporal genomics is applied to more systems, species and questions, best practices can be helpful guides to make the most efficient use of limited resources. Here, we conduct a systematic literature review to synthesize the effects of temporal genomics methodology on our ability to detect evolutionary changes. We focus on studies investigating recent change within the past 200 years, highlighting evolutionary processes that have occurred during the past two centuries of accelerated anthropogenic pressure. We first identify the most frequently studied taxa, systems, questions and drivers, before highlighting overlooked areas where further temporal genomic studies may be particularly enlightening. Then, we provide guidelines for future study and sample designs while identifying key considerations that may influence statistical and analytical power. Our aim is to provide recommendations to a broad array of researchers interested in using temporal genomics in their work.

Amphibians face global declines, and it remains unclear the extent to which species have responded, and through what mechanisms, to persist in the face of emerging diseases and climate change. In recent years, the rediscovery of species considered possibly extinct has sparked public and scientific attention. These are hopeful cases in an otherwise bleak story. Yet, we know little about the population status of these rediscovered species, or the biology underlying their persistence. Here, we highlight the iconic Harlequin frogs (Bufonidae: Atelopus) as a system that was devastated by declines but now encompasses between 18 and 32 rediscoveries (25-37 % of possible extinctions) in the last two decades. Geographic distributions of rediscoveries closely match regional described species abundance, and rediscoveries are documented at elevations from 100 m to >3500 m, with no significant differences between mean historical and contemporary elevations. We also provide genomic data on six decimated species, with historical sample comparisons for two of the species and find a pattern of decreasing genetic variation the longer a species had been missing. Further, we document marked decrease in heterozygosity in one species, but not the other, indicating potential idiosyncratic consequences of declines. Finally, we discuss research priorities to guide the potential transition from amphibian declines to recoveries and to maximize conservation efforts.

Secondary sympatry amongst sister lineages is strongly associated with genetic and ecological divergence. This pattern suggests that for closely related species to coexist in secondary sympatry, they must accumulate differences in traits that mediate ecological and/or reproductive isolation. Here, we characterized inter- and intraspecific divergence in three giant tree frog species whose distributions stretch across West and Central Africa. Using genome-wide single-nucleotide polymorphism data, we demonstrated that species-level divergence coincides temporally and geographically with a period of large-scale forest fragmentation during the late Pliocene. Our environmental niche models further supported a dynamic history of climatic suitability and stability, and indicated that all three species occupy distinct environmental niches. We found modest morphological differentiation amongst the species with significant divergence in tympanum diameter and male advertisement call. In addition, we confirmed that two species occur in secondary sympatry in Central Africa but found no evidence of hybridization. These patterns support the hypothesis that cycles of genetic exchange and isolation across West and Central Africa have contributed to globally significant biodiversity. Furthermore, divergence in both ecology and reproductive traits appear to have played important roles in maintaining distinct lineages. At the intraspecific level, we found that climatic refugia, precipitation gradients, marine incursions, and potentially riverine barriers generated phylogeographic structure throughout the Pleistocene and into the Holocene. Further studies examining phenotypic divergence and secondary contact amongst these geographically structured populations may demonstrate how smaller scale and more recent biogeographic barriers contribute to regional diversification.

The Príncipe giant tree frog Leptopelis palmatus is endemic to the small oceanic island of Príncipe in the Gulf of Guinea. For several decades, this charismatic but poorly known species was confused with another large tree frog species from continental Africa, L. rufus. Phylogenetic relationships within the African genus Leptopelis are poorly understood and consequently the evolutionary history of L. palmatus and its affinity to L. rufus remain unclear. In this study, we combined mitochondrial DNA (mtDNA), morphological, and acoustic data for L. palmatus and L. rufus to assess different axes of divergence between the species. Our mtDNA gene tree for the genus Leptopelis indicated that L. palmatus is not closely related to L. rufus or other large species of Leptopelis. Additionally, we found low mtDNA diversity in L. palmatus across its range on Príncipe. We found significant morphological differences between females of L. rufus and L. palmatus, but not between males. We characterised the advertisement call of L. palmatus for the first time, which is markedly distinct from L. rufus. Finally, we summarised our observations of L. palmatus habitats and additional notes on phenotypic variation and behaviour. Our study reinforces the distinctiveness of L. palmatus and provides information important for the conservation of this endangered species. A rã gigante de Príncipe, Leptopelis palmatus, é endêmica da pequena ilha oceânica de Príncipe no Golfo da Guiné. Por várias décadas, esta espécie carismática mas pouco conhecida foi confundida com outra espécie grande de rã da África continental, L. rufus. As relações filogenéticas dentro do gênero africano Leptopelis são mal compreendidas e, conseqüentemente, a história evolutiva de L. palmatus e sua afinidade com L. rufus permanecem obscuras. Neste estudo, combinamos dados de DNA mitocondrial (mtDNA), morfológicos e acústicos de L. palmatus e L. rufus para avaliar diferentes eixos de divergência entre as espécies. Nossa árvore de genes de mtDNA para o gênero Leptopelis indicou que L. palmatus não está proximamente relacionada a L. rufus ou outras espécies grandes de Leptopelis, e encontramos baixa diversidade de mtDNA em L. palmatus em toda a sua distribuição em Príncipe. Encontramos diferenças morfológicas significativas entre as fêmeas de L. rufus e L. palmatus, mas não entre os machos. Caracterizamos o canto reprodutor de L. palmatus pela primeira vez, que é marcadamente distinto do de L. rufus. Finalmente, resumimos nossas observações dos habitats de L. palmatus e notas adicionais sobre variação fenotípica e comportamento. Nosso estudo fornece informações importantes para a conservação dessa espécie ameaçada de extinção