Gas-phase reactivity of five differently substituted positively charged phenyl radicals was examined toward six amino acids by using Fourier transform ion cyclotron resonance mass spectrometry (FT-ICR). The reactivity of the radicals studied was determined by the electrophilicity of the radical, which can be characterized by the radical's electron affinity (EA). The larger the electron affinity of the radical, the higher the overall reaction rate. In addition to the expected H-atom abstraction, several unprecedented reaction pathways were observed, including NH2 abstraction, SH abstraction, and SCH3 abstraction. These reaction pathways dominate for the most electrophilic radicals, and they may not follow radical but rather nucleophilic addition-elimination mechanisms. Hydrogen abstraction from glycine was also investigated theoretically. The results indicate that hydrogen abstraction from alphaC of glycine is both kinetically and thermodynamically favored over the NH2 group. The ordering of transition state energies for hydrogen abstraction from the alphaC and NH2 groups was found to reflect the radicals' EA ordering.

A chemical ionization method is reported for distinction of diastereomeric hydroxysteroids by using Fourier-transform ion cyclotron mass spectrometry (FT-ICR). Certain phosphenium ions are demonstrated to react with stereoisomeric steroids to yield qualitatively different product ions. For example, l,3,5(10)-estratriene-3,16β,17β-triol (cis-estriol) reacts with the dimethoxy phosphenium ion to form a diagnostic product ion (not formed for the trans-estriol) through addition followed by the loss of two molecules of methanol. In an analogous manner, the 1,3-dioxolan-2-phosphenium ion produces a diagnostic product ion through the loss of ethylene glycol from the adduct of cis-estriol only. The l,3,5(10)-estratriene-3,16α,17β-triol (trans-estriol), on the other hand, reacts with each phosphenium ion only via hydroxide abstraction-initiated pathways that indicate the presence of at least two hydroxyl groups in the molecule. These specific reactions take place for all hydroxysteroids examined, independent of their stereochemistry. Another isomer pair, cholestan-3α,5α-diol (cis-cholestandiol) and cholestan-3β,5α-diol (trans-cholestandiol), is differentiated based on selective elimination of water only from the adduct of the cis-isomer. However, the method does not allow distinction between the stereoisomeric 5β-pregnane-3α,17α,20α-triol and 5β-pregnane-3α,17α,20β-triol. The different reactivities of the three pairs of steroid isomers and of each diastereomeric compound pair are rationalized by reaction enthalpies and steric effects based on straightforward and predictable reaction mechanisms.

Polar effects are demonstrated to play an important role in controlling the reactivity of polyaromatic sigma-radicals that are structurally related to the active intermediates of the enediyne anticancer type antibiotics. This was accomplished by measuring the rate constants of hydrogen atom abstraction for novel, charged dehydroquinolines, dehydroisoquinolines, dehydrobenzenes, and dehydronaphthalenes in the gas phase by using Fourier-transform ion cyclotron resonance mass spectrometry. The reactivity trends observed for these radicals upon hydrogen atom abstraction from tetrahydrofuran and 2-methyltetrahydrofuran, simple models of deoxyribose, do not reflect differences in reaction exothermicities, radical sizes, exact location of the radical site in the ring system, or heteroatom-radical site distances. However, the reactivity trends match the trend in the calculated electron affinities of the radicals. The radicals' different electrophilicities result in variations in the reaction barrier due to different extents of polarization of the transition state. Generally, the reaction efficiencies are the greatest when the formally charged heteroatom is contained within the same ring system as the radical site. In this case, polar effects have the greatest influence on radical reactivity. Hence, insertion of a basic heteroatom (which gets protonated in biological systems) into specific locations in the polyaromatic ring system of the sigma-biradicals, which ultimately cause cleavage of DNA exposed to the enediyne antitumor drugs, should allow tuning of the reactivity of these radicals.

In order to investigate competition between radical substitution and addition reactions, the gas-phase reactivity of phenyl radicals bearing a chemically inert, positively charged group and a neutral substituent (CH3, Cl, or Br), both at a meta position with respect to the radical site, was examined toward several aromatic substrates in a dual-cell Fourier transform ion cyclotron resonance mass spectrometer. The radicals undergo hydrogen atom abstraction from the substituent and/or addition to the phenyl ring of benzeneselenol, thiophenol, benzaldehyde, toluene, aniline, and phenol. The presence of an electron-withdrawing substituent Cl or Br on the phenyl ring of the radical slightly increases the rates for both hydrogen atom abstraction and addition due to favorable polarization of the reactions’ transition states. The observation of a stable ion-molecule addition product in most reactions was unexpected since in a low-pressure gas-phase environment, adducts are typically unable to release their excess energy before dissociation to products or back to reactants. However, the addition products discussed here are low in energy [addition is exothermic by 24–30 kcal/mol; B3LYP/6-31Gd+ZPVE] and hence are long lived enough to become stabilized by infrared emission. The extent to which the charged radicals are able to abstract a hydrogen atom from the aromatic substrate and form stable products via addition to the aromatic ring was found to vary greatly. The outcome of this competition can be rationalized by reaction exothermicities only in extreme cases, i.e. for benzeneselenol and thiophenol, that predominantly react by hydrogen atom abstraction due to their especially weak heteroatom-hydrogen bonds and aniline that undergoes almost exclusive addition due to particularly stable resonance-stabilized addition products. For the other substrates, competition between the two reaction pathways is controlled by a complex interplay of polar effects that affects the energies of both transition states but to different extents.

The rate of hydrogen atom abstraction from tributyltin hydride, benzeneselenol, thiophenol, and tetrahydrofuran was measured in the gas phase for charged phenyl radicals with different neutral substituents at the meta- or ortho-position. A charged pyridinium substituent (meta or para) allowed the manipulation of the radicals in the Fourier transform ion cyclotron resonance mass spectrometer that was used to carry out the experiments. All the reaction rates were found to be similarly affected by substituents on the radical: meta, H < Br similar to Cl < CN (most reactive); ortho, H < CF3 similar to Cl similar to F. The experimental observations parallel the transition-state energies calculated for hydrogen abstraction from methanol. However, the calculated reaction exothermicities do not correlate with the reactivity trends. Instead, a correlation exists between the reactivity and electron affinity of the radicals. We conclude that the electron-withdrawing substituents studied here lower the reaction barrier by increasing the polarity of the transition state, without an associated increase in reaction exothermicity. The increase in the electron affinity (AEA) of the radical caused by a given substituent provides a sensitive probe for the substituent's barrier-lowering effect (in the few cases studied in detail, the barrier is lowered by about 10% of Delta EA(v)). Another way to lower the barrier involves lowering the ionization energy of the substrate. Indeed, all the radicals follow the reactivity trend of thiophenol > 4-fluorothiophenol > pentafluorothiophenol. This trend reflects the decreasing ionization energies of the three substrates rather than the decreasing reaction exothermicities or increasing homolytic bond-dissociation energies (4-fluorothiophenol > thiophenol > pentafluorothiophenol). Apparently, the polar control overrides the enthalpic control in this case. The results reported for radicals with different distances between the radical site and the charged group suggest that similar substituent effects are expected for neutral phenyl radicals, and that the hydrogen abstraction ability of heteroaromatic radicals is likely to be tunable by pH.