Determining the melting curves of materials up to high pressures has long been a challenge experimentally and theoretically. A large class of materials, including most metals, has been shown to exhibit hidden scale invariance, an approximate scale invariance of the potential-energy landscape that is not obvious from the Hamiltonian. For these materials the isomorph theory allows the identification of curves in the phase diagram along which structural and dynamical properties are invariant to a good approximation when expressed in appropriately scaled form. These curves, the isomorphs, can also be used as the basis for constructing accurate melting curves from simulations at a single state point [U. R. Pedersen et al., Nat. Comm. 7, 12386 (2016)]. In this work we apply this method to the metals Cu simulated using the effective medium theory and Al simulated using density functional theory (DFT). For Cu the method works very well and is validated using two-phase melting point simulations. For Al there are likewise good isomorphs, and the method generates the melting curve accurately as compared to previous experimental and DFT results. In support of a recent suggestion of Hong and van de Walle [Phys. Rev. B 100, 140102 (2019)], we finally suggest that the tendency for the density-scaling exponent $\gamma$ to decrease with increasing density in metals implies that metals in general will undergo re-entrant melting, i.e., have a maximum of melting temperature as a function of pressure.
We study a united-atom model of the ionic liquid 1-butyl-1-methylpyrrolidinium bis(trifluoromethyl)sulfonylamide to determine to what extent there exist curves in the phase diagram along which the microscopic dynamics are invariant when expressed in dimensionless, or reduced, form. The initial identification of these curves, termed isodynes, is made by noting that contours of reduced shear viscosity and reduced self-diffusion coefficient coincide to a good approximation. Choosing specifically the contours of reduced viscosity as nominal isodynes, further simulations were carried out for state points on these, and other aspects of dynamics were investigated to study their degree of invariance. These include the mean-squared displacement, shear-stress autocorrelation function, and various rotational correlation functions. These were invariant to a good approximation, with the main exception being rotations of the anion about its long axis. The dynamical features that are invariant have in common that they are aspects that would be relevant for a coarse-grained description of the system; specifically, removing the most microscopic degrees of freedom in principle leads to a simplification of the potential energy landscape, which allows for the existence of isodynes.
IntroductionThe oral trichomonad Trichomonas tenax is increasingly appreciated as a likely contributor to periodontitis, a chronic inflammatory disease induced by dysbiotic microbiota, in humans and domestic animals and is strongly associated with its worst prognosis. Our current understanding of the molecular basis of T. tenax interactions with host cells and the microbiota of the oral cavity are still rather limited. One laboratory strain of T. tenax (Hs-4:NIH/ATCC 30207) can be grown axenically and two draft genome assemblies have been published for that strain, although the structural and functional annotation of these genomes is not available.MethodsGenSAS and Galaxy were used to annotate two publicly available draft genomes for T. tenax, with a focus on protein-coding genes. A custom pipeline was used to annotate the CAZymes for T. tenax and the human sexually transmitted parasite Trichomonas vaginalis, the most well-characterized trichomonad. A combination of bioinformatics analyses was used to screen for homologs of T. vaginalis virulence and colonization factors within the T. tenax annotated proteins.ResultsOur annotation of the two T. tenax draft genome sequences and their comparison with T. vaginalis proteins provide evidence for several candidate virulence factors. These include candidate surface proteins, secreted proteins and enzymes mediating potential interactions with host cells and/or members of the oral microbiota. The CAZymes annotation identified a broad range of glycoside hydrolase (GH) families, with the majority of these being shared between the two Trichomonas species.DiscussionThe presence of candidate T. tenax virulence genes supports the hypothesis that this species is associated with periodontitis through direct and indirect mechanisms. Notably, several GH proteins could represent potential new virulence factors for both Trichomonas species. These data support a model where T. tenax interactions with host cells and members of the oral microbiota could synergistically contribute to the damaging inflammation characteristic of periodontitis, supporting a causal link between T. tenax and periodontitis.
IntroductionThe protozoan parasite Trichomonas vaginalis is the most common cellular sexually transmitted disease in humans, and the closely related species Trichomonas gallinae is an avian parasite of ecological and economic importance. Phylogenetic evidence suggests T. vaginalis arose during bird to human transmission of a T. gallinae-like ancestor. Trichomonas vaginalis shares a strong clinical association with the independent sexually transmitted pathogen Metamycoplasma (formerly Mycoplasma) hominis, and the uncultured bacterium “Candidatus Malacoplasma (formerly Mycoplasma) girerdii,” with the latter association being an order of magnitude stronger. Both bacterial species have been shown to profoundly influence T. vaginalis growth, energy production and virulence-associated mechanisms.MethodsEvidence for a novel Malacoplasma sp. was discovered by in vivo Illumina metatranscriptomics sequencing of the T. gallinae-infected pigeon mouth. We leveraged published 16S rDNA profiling data from digestive tract of 12 healthy and 24 T. gallinae-infected pigeons to investigate association between the novel Malacoplasma sp. and T. gallinae. We utilised Illumina metagenomics sequencing targeted to pigeon oral and crop samples infected with the novel Malacoplasma sp. to generate its full-length genome sequence. Sequence similarity network analysis was used to compare annotated proteins from the novel Malacoplasma sp. with a range of other related species.ResultsHere we present evidence for a novel Malacoplasma species, related to “Ca. M. girerdii,” that is strongly associated with T. gallinae in the upper digestive tract of domestic pigeons. Analysis of the genome sequence revealed gene features apparently specific to a Trichomonas-symbiotic Malacoplasma lineage.DiscussionThese data support a model of long-term association between Trichomonas and Malacoplasma spp. that has been conserved across diversification of the Trichomonas lineage and the host species barrier from birds to human.
We have studied shear deformation of binary Lennard-Jones glasses to investigate the extent to which the transient part of the stress strain curves is invariant when the thermodynamic state point is varied along an isomorph. Shear deformations were carried out on glass samples of varying stability, determined by cooling rate, and at varying strain rates, at state points deep in the glass. Density changes up to and exceeding a factor of two were made. We investigated several different methods for generating isomorphs but none of the previously developed methods could generate sufficiently precise isomorphs given the large density changes and nonequilibrium situation. Instead, the temperatures for these higher densities were chosen to give state points isomorphic to the starting state point by requiring the steady-state flow stress for isomorphic state points to be invariant in reduced units. In contrast to the steady-state flow stress, we find that the peak stress on the stress strain curve is not invariant. The peak stress decreases by a few percent for each ten percent increase in density, although the differences decrease with increasing density. Analysis of strain profiles and nonaffine motion during the transient phase suggests that the root of the changes in peak stress is a varying tendency to form shear bands, with the largest tendency occurring at the lowest densities. We suggest that this reflects the effective steepness of the potential; a higher effective steepness gives a greater tendency to form shear bands.
Trichomonads, anaerobic microbial eukaryotes members of the phylum Parabasalia, are common obligate extracellular symbionts that can lead to pathological or asymptomatic colonization of various mucosal surfaces in a wide range of animal hosts. Results from previous in vitro studies have suggested a number of intriguing mucosal colonization strategies by Trichomonads, notably highlighting the importance of interactions with bacteria. However, in vivo validation is currently lacking. A previous metatranscriptomics study into the cause of idiopathic chronic diarrhoea in macaques reported the presence of an unidentified protozoan parasite related to Trichomonas vaginalis. In this work, we performed a reanalysis of the published data in order to identify the parasite species present in the macaque gut. We also leveraged the information-rich metatranscriptomics data to investigate the parasite behaviour in vivo. Our results indicated the presence of at least 3 genera of Trichomonad parasite; Tetratrichomonas, Pentatrichomonas and Trichomitus, 2 of which had not been previously reported in the macaque gut. In addition, we identified common in vivo expression profiles shared amongst the Trichomonads. In agreement with previous findings for other Trichomonads, our results highlighted a relationship between Trichomonads and mucosal bacterial diversity which could be influential in health and disease.
Bacterial cell growth and division require the coordinated action of enzymes that synthesize and degrade cell wall polymers. Here, we identify enzymes that cleave the d -arabinan core of arabinogalactan, an unusual component of the cell wall of Mycobacterium tuberculosis and other mycobacteria. We screened 14 human gut-derived Bacteroidetes for arabinogalactan-degrading activities and identified four families of glycoside hydrolases with activity against the d -arabinan or d -galactan components of arabinogalactan. Using one of these isolates with exo- d -galactofuranosidase activity, we generated enriched d -arabinan and used it to identify a strain of Dysgonomonas gadei as a d -arabinan degrader. This enabled the discovery of endo- and exo-acting enzymes that cleave d -arabinan, including members of the DUF2961 family (GH172) and a family of glycoside hydrolases (DUF4185/GH183) that display endo- d -arabinofuranase activity and are conserved in mycobacteria and other microbes. Mycobacterial genomes encode two conserved endo- d -arabinanases with different preferences for the d -arabinan-containing cell wall components arabinogalactan and lipoarabinomannan, suggesting they are important for cell wall modification and/or degradation. The discovery of these enzymes will support future studies into the structure and function of the mycobacterial cell wall.
We simulate dynamic mechanical analysis experiments for the Kob-Andersen binary LennardJones system. For this, the SLLOD algorithm with time-dependent strain rates is applied to give a sinusoidally varying strain at different densities and temperatures. The starting point is a temperature scan at a fixed reference density. Isomorph theory predicts that for other densities corresponding temperatures can be identified at which the mechanical properties are unchanged when scaled appropriately. We determine the isomorphically equivalent temperatures by analysing how particle forces change upon scaling configurations to the new density. Loss moduli expressed in suitable reduced units are compared for isomorphic state points. When plotted against the unscaled temperatures, these reduced loss curves are observed to collapse indicating the validity of isomorph theory for dynamic mechanical analysis experiments. Two different methods to determine isomorphic temperatures are considered. While one of them breaks down for the largest density rescalings considered in this study, the other one is still applicable in this region. The decorrelation of force vectors upon rescaling is investigated as a possible origin of this effect. Our results demonstrate that the simplification of the phase diagram entailed by isomorph theory for a wide class of system is relevant also for the mechanical properties of glasses.
A long research tradition considers the role of “power” in the relationship between multinational corporations (MNC) and host country governments. However, major theories emphasize different sources of power, leaving open room for misinterpretation or discounting the role of power in the relationship. We outline the sources of power applied when studying the MNC-host government relationship and use examples, Intel’s investment in Costa Rica and Huawei’s relationship with governments in the US and Europe, to illustrate how the sources of power differ, sometimes radically, and how this translates into actions and reactions by MNCs and host governments. Drawing upon these insights, we propose a dyad-level framework for understanding power, which enables cross-theoretical comparisons, higher breadth and depth of consideration, and offers scholars and managers a deeper understanding of the power relationship between MNCs and host governments.
Trichomoniasis, the most common non-viral sexually transmitted infection worldwide, is caused by the protozoon Trichomonas vaginalis. The 5- nitroimidazole drugs, of which metronidazole is the most prescribed, are the only effective drugs to treat trichomoniasis. Resistance against metronidazole is increasingly reported among T. vaginalis isolates. T. vaginalis can establish an endosymbiosis with two Mycoplasma species, Mycoplasma hominis and Candidatus Mycoplasma girerdii, whose presence has been demonstrated to influence several aspects of the protozoan pathobiology. The role of M. hominis in T. vaginalis resistance to metronidazole is controversial, while the influence of Ca. M. girerdii has never been investigated. In this work, we investigate the possible correlation between the presence of Ca. M. girerdii and/or M. hominis and the in vitro drug susceptibility in a large group of T. vaginalis isolated in Italy and in Vietnam. We also evaluated, via RNA-seq analysis, the expression of protozoan genes involved in metronidazole resistance in a set of syngenic T. vaginalis strains, differing only for the presence/absence of the two Mycoplasmas. Our results show that the presence of M. hominis significantly increases the sensitivity to metronidazole in T. vaginalis and affects gene expression. On the contrary, the symbiosis with Candidatus Mycoplasma girerdii seems to have no effect on metronidazole resistance in T. vaginalis.
T. vaginalis and M. hominis form a unique case of endosymbiosis that modulates the parasite’s pathobiology. Recently, a new nonculturable mycoplasma species (“ Candidatus Mycoplasma girerdii”) has been described as closely associated with the protozoon.
Division and degradation of bacterial cell walls requires coordinated action of a myriad of enzymes. This particularly applies to the elaborate cell walls of acid-fast organisms such as Mycobacterium tuberculosis , which consist of a multi-layered cell wall that contains an unusual glycan called arabinogalactan. Enzymes that cleave the d-arabinan core of this structure have not previously been identified in any organism. We have interrogated the diverse carbohydrate degrading enzymes expressed by the human gut microbiota and uncovered four families of glycoside hydrolases with the capability to degrade the d-arabinan or d-galactan components of arabinogalactan. Using novel exo-d-galactofuranosidases from gut bacteria we generated enriched d-arabinan and used it to identify D. gadei as a D-arabinan degrader. This enabled the discovery of endo- and exo-acting enzymes that cleave D-arabinan. We have identified new members of the DUF2961 family (GH172), and a novel family of glycoside hydrolases (DUF4185) that display endo-d-arabinofuranase activity. The DUF4185 enzymes are conserved in mycobacteria and found in many microbes, suggesting that the ability to degrade mycobacterial glycans plays an important role in the biology of diverse organisms. All mycobacteria encode two conserved endo-d-arabinanases that display different preferences for the d-arabinan-containing cell wall components arabinogalactan and lipoarabinomannan, suggesting they are important for cell wall modification and/or degradation. The discovery of these enzymes will support future studies into the structure and function of the mycobacterial cell wall. ### Competing Interest Statement The authors have declared no competing interest. * AG : arabinogalactan DUF : domain of unknown function GH : glycoside hydrolase IC-PAD : ion chromatography/pulsed amperometric detection LAM : Lipoarabinomannan PUL : polysaccharide utilization locus
Stakeholder strategies, or firms’ approaches to stakeholder management, may have a significant impact on firms’ long-term prosperity and, thereby, on their life chances, as established in the stakeholder view of the firm. A systematic literature review surveyed the contemporary body of quantitative empirical research that has examined firm-level activities relevant to stakeholder management, corporate social responsibility, and corporate social performance, because these three constructs are often conflated in literature. A search uncovered 99 articles published in 22 journals during the 10-year period from 2010 to 2019. Most studies employed databases reporting environmental, social, and governance (ESG) ratings, originally created for use in socially responsible investing and corporate risk assessment, but others employed content analysis of texts and primary surveys. Examination revealed a key difference in the scoring of data, in that some studies aggregated numerous indicators into a single composite index to indicate levels of stakeholder management, and other studies scored more articulated constructs. Articulated constructs provided richer observations, including governance and structural arrangements most likely to provide both stakeholder benefits and protections. Also observed were constraining influences of managerial and market myopia, sustaining influences from resilience and complexity frameworks, and recognition that contextual variables are contingencies having impact in recognizing the efficacy of stakeholder management strategies.
Recent experimental results for the structure in the ionic liquid PYR14 +TFSI- have shown invariance in the main structure factor peak along curves of equal electrical conductivity [Hansen et al., Phys. Chem. Chem. Phys. 22, 14169 (2020)]. The charge peak decreases slightly with increasing temperature at fixed conductivity, however. For simple liquids, curves with invariant dynamics and structure, known as isomorphs, can be identified as configurational adiabats. While liquids with strong-Coulomb interactions do not have good isomorphs, ionic liquids could be an intermediate case with approximate isomorphs along which some aspects of structure and dynamics are invariant. We study a simple molten salt model using molecular dynamics simulations to test this hypothesis. Simple measures of structure and dynamics are investigated along with one transport property, the shear viscosity. We find that there is a substantial degree of invariance of the self-intermediate scattering function, the mean square displacement, and the viscosity along configurational adiabats over a wide range of densities for the three adiabats simulated. The density range studied is more than a factor of two and extends from the strong-Coulomb regime at low densities to the weak-Coulomb regime at high densities. The structure is not invariant over the full range of density, but in the weak-Coulomb regime, we see behavior similar to that seen experimentally over density changes of order 15%. In view of the limited structural invariance but substantial dynamical invariance, we designate the configurational adiabats as isodynes.
Tritrichomonas foetus is a venereal trichomonad parasite which causes reproductive issues in cattle. No other trichomonads are known to be urogenital pathogens in cattle, but there are several reports of Tetratrichomonas and Pentatrichomonas isolates of unclear origin from the cattle urogenital tract (UGT) in the Americas. This study reports the first case of a non-T. foetus cattle urogenital trichomonad isolate in Europe. Molecular analysis of the internal transcribed spacer (ITS) 1-5.8S ribosomal RNA-ITS 2 and 18S ribosomal RNA loci suggest that the isolate is a Tetratrichomonas species from a lineage containing other previously described bull preputial isolates. We identified close sequence similarity between published urogenital and gastrointestinal Tetratrichomonas spp., and this is reviewed alongside further evidence regarding the gastrointestinal origin of non-T. foetus isolates. Routine screening for T. foetus is based on culture and identification by microscopy, and so considering other trichomonad parasites of the bovine UGT is important to avoid misdiagnosis.
This paper presents computer simulations of Cu_xZr_100-x (x=36,50,64) in the liquid and glass phases. The simulations are based on the effective-medium theory (EMT) potentials. We find good invariance of both structure and dynamics in reduced units along the isomorphs of the systems. The state points studied involve a density variation of almost a factor of two and temperatures going from 1500 K to above 4000 K for the liquids and from 500 K to above 1500 K for the glasses. For comparison, results are presented also for similar temperature variations along isochores, showing little invariance. In general for a binary system the phase diagram has three axes: composition, temperature and pressure (or density). When isomorphs are present, there are effectively only two axes, and for a fixed composition just one. We conclude that the liquid and glass parts of the thermodynamic phase diagram of this metallic glass former at a fixed composition is effectively one-dimensional in the sense that many physical properties are invariant along the same curves, implying that in order to investigate the phase diagram, it is only necessary to go across these curves.
The Belt and Road Initiative (BRI) is an important policy agenda undertaken by the Chinese government. We explore how the BRI – as well as an associated policy, the creation of Chinese overseas special economic zones – influences Chinese outward foreign direct investment (FDI). We find that host-country institutional fragility positively influences Chinese FDI volumes, and that the impact of institutional fragility on Chinese inward FDI to the host is amplified in the presence of the BRI. Specifically, BRI policy facilitates FDI to countries with weaker rule of law and less government accountability. We argue that, while the BRI may actively facilitate economic growth (i.e., via infrastructure development), and in turn aspects of human development, particularly in less-developed economies, its likely impacts on political rights may not be so promising.
Saturated solutions of calcium L-lactate in water or in deuterium oxide continuously dissolve calcium L-lactate by addition of solid sodium D-gluconate and become strongly supersaturated in calcium D-gluconate due to no or slow precipitation. The quantification of total dissolved calcium allied with the calcium complexes equilibrium constants allowed an ion speciation, which shows an initial non-thermal and spontaneous supersaturation of more than a factor of 50 at 25 degrees C only slowly decreasing after initiation of precipitation of calcium D-gluconate after a lag phase of several hours. A mathematical model is proposed, based on numerical solution of coupled differential equations of dynamics of L-lactate and D-gluconate exchange during the lag phase for precipitation and during precipitation. A slow exchange of L-lactate coordinated to calcium with D-gluconate is indicated with a time constant of 0.20 h(-1) in water and of 0.15 h(-1) in deuterium oxide and a kinetic deuterium/hydrogen isotope effect of 1.25. Such spontaneous non-thermal supersaturation and slow ligand exchange with a pseudo first order equilibration process with a half-life of 3.5 h in water for calcium hydroxycarboxylates can help to understand the higher calcium bioavailability from calcium hydroxycarboxylates compared to simple salts.
An initial public offering (IPO) represents a unique milestone in the lifecycle of a firm. Yet, our understanding of the IPO phenomenon remains incomplete and marked by mixed findings. Using meta-analytical techniques on a sample of 123 empirical studies, we examine the factors that influence the short-term outcomes (i.e., underpricing and proceeds) and the long-term outcomes (i.e., financial performance and risk) of IPO firms. Our efforts yield few significant results for antecedents that prior research had proposed as effective signals of IPO firm quality, and we thus conclude that signaling theory is limited in its ability to capture the IPO process. Our findings, however, provide preliminary support for our contention that stakeholders influence short-term IPO outcomes depending on their temporal orientation. We also find strong support for our prediction that the IPO has consequences for long-term firm development. While high underpricing positively affects long-term firm performance, it also heightens long-term firm risk. Large proceeds result in higher long-term firm performance and lower firm risk, but they come at the expense of a higher percentage of equity being traded during the IPO.
Recent density functional theory simulations showed that metals have a hitherto overlooked symmetry termed "hidden scale invariance" [Hummel et al., Phys. Rev. B 92, 174116 (2015)PRBMDO1098-012110.1103/PhysRevB.92.174116]. This scaling property implies the existence of lines in the thermodynamic phase diagram, so-called isomorphs, along which structure and dynamics are invariant to a good approximation when given in properly reduced units. This means that the phase diagram becomes effectively one-dimensional with regard to several physical properties. This paper investigates consequences and implications of the isomorph theory in six metallic crystals: Au, Ni, Cu, Pd, Ag, and Pt. The data are obtained from molecular dynamics simulations employing many-body effective medium theory (EMT) to model the atomic interactions realistically. We test the predictions from isomorph theory for structure and dynamics by means of the radial distribution and the velocity autocorrelation functions, as well as the prediction of instantaneous equilibration after a jump between two isomorphic state points. Many properties of crystals tend to be dominated by defects, and many of the properties associated with these defects are expected to be isomorph invariant as well. This is investigated in this paper for the case of vacancy diffusion. In regard to the perfect crystal properties, we find the predicted invariance of structure and also, though less perfectly, of dynamics. We show results on the variation of the density-scaling exponent γ, which can be related to the Grüneisen parameter, for all six metals. We consider large density changes up to a factor of two, corresponding to very high pressures. Unlike systems modeled using the Lennard-Jones potential where the density-scaling exponent γ is almost constant, this quantity varies substantially when using the EMT potential and is also strongly material dependent.