Marine biodiversity monitoring in the Mediterranean’s increasingly threatened ecosystems is crucial for effective ecosystem conservation and management. Here, we leveraged the Mediterranean International Trawl Survey program (MEDITS) to implement eDNA sampling through the recently tested ‘metaprobe’ procedure and characterize fish assemblages in three separate areas off the Italian coasts: Northern Adriatic Sea (NoAS), Ligurian and Northern Tyrrhenian Sea (LNTS), and Sardinian Sea (SaS). By combining the information from two homologous mitochondrial 12S metabarcodes––i.e., Elas02 and Tele02 targeting elasmobranchs and teleosts, respectively––we identified 108 species, over 60

Worldwide, states are gazetting new Marine Protected Areas (MPAs) to meet the international commitment of protecting 30% of the seas by 2030. Yet, protection benefits only come into effect when an MPA is implemented with activated regulations and actively managed through continuous monitoring and adaptive management. To assess if actively managed MPAs are the rule or the exception, we used the Mediterranean and Black Seas as a case study, and retrieved information on monitoring activities for 878 designated MPAs in ten European Union (EU) countries. We searched for scientific and grey literature that provides information on the following aspects of MPA assessment and monitoring: ecological (e.g., biomass of commercially exploited fish), social (e.g., perceptions of fishers in an MPA), economic (e.g., revenue of fishers) and governance (e.g., type of governance scheme). We also queried MPA authorities on their past and current monitoring activities using a web-based survey through which we collected 123 responses. Combining the literature review and survey results, we found that approximately 16% of the MPA designations (N = 878) have baseline and/or monitoring studies. Most monitoring programs evaluated MPAs based solely on biological/ecological variables and fewer included social, economic and/or governance variables, failing to capture and assess the social-ecological dimension of marine conservation. To increase the capacity of MPAs to design and implement effective social-ecological monitoring programs, we recommend strategies revolving around three pillars: funding, collaboration, and technology. Following the actionable recommendations presented herein, MPA authorities and EU Member States could improve the low level of MPA monitoring to more effectively reach the 30% protection target delivering benefits for biodiversity conservation.

In the Mediterranean Sea, the blackbellied angler, Lophius budegassa Spinola, 1807, represents a relevant fraction of the commercial by-catch of bottom trawling and small-scale fisheries that use passive gears (e.g., set nets, bottom longlines, etc.). Despite its importance, there are no comprehensive studies on the population dynamics of this species, and there is still scarce and scattered knowledge of its biology and ecology. Biomass, morphometric, and biological data of the blackbellied angler were collected from 1994 to 2021 by means of the Mediterranean International Bottom Trawl Survey (MEDITS) programme in the Ligurian and northern Tyrrhenian Seas, and in the EU Data Collection Framework during the period of 2006-2021. Furthermore, ageing was performed on specimens collected from 2013 to 2021 during the MEDITS programme. There were high values for the density indices and the spatial distribution of biomass in the central sector of the investigated area (the Tuscan Archipelago), mostly on the continental shelf. The length-weight relationship showed negative allometric growth when considering the sexes together, and no difference between the sexes. The size at first maturity (L50) was estimated at 39.4 cm total length (TL) in females and at 29.2 cm TL in males. The obtained Von Bertalanffy growth parameters were: in females, L∞ = 74.50 cm, k = 0.10 years-1, and t0 = -0.40 years; in males, L∞ = 61.30 cm, k = 0.14 years-1, and t0 = -0.38 years. There were differences in growth between males and females for L∞ (χ2 = 10.04; p < 0.05) and k (χ2 = 6.12; p < 0.05).

Three specimens of Silver John dory, Zenopsis conchifer, (Lowe, 1852) were observed for the first time in the Ligurian Sea and northern Tyrrhenian Sea (western Mediterranean), one in 2020 and two in 2021. This is the fifth record (up to ten individuals) of Z. conchifer in the Mediterranean Sea, which occurred 11 years after the last observation in 2010 in the southern Tyrrhenian Sea. The present study reports the northernmost record of the species in the western Mediterranean Sea, indicating a potential range expansion of the distribution of this Atlantic species across the area. Morphometric, meristic and biological data of the three specimens are provided and compared with previous published records.

Three specimens of Silver John dory, Zenopsis conchifer, (Lowe, 1852) were observed for the first time in the Ligurian Sea and northern Tyrrhenian Sea (western Mediterranean), one in 2020 and two in 2021. This is the fifth record (up to ten individuals) of Z. conchifer in the Mediterranean Sea, which occurred 11 years after the last observation in 2010 in the southern Tyrrhenian Sea. The present study reports the northernmost record of the species in the western Mediterranean Sea, indicating a potential range expansion of the distribution of this Atlantic species across the area. Morphometric, meristic and biological data of the three specimens are provided and compared with previous published records.

The deep-sea can act as a sink for legacy contaminants such as organochlorines (OCs), causing damages in its inhabitants for their persistence and their prolonged effects in the organisms. HCB, DDT and its isomers, and 28 PCBs congeners were detected in muscle and embryonic tissues of three deep-sea chondrichthyes Chimaera monstrosa (n = 16), Dalatias licha (n = 12) and Etmopterus spinax (n = 51) sampled in Ligurian and Tyrrhenian Sea (Mediterranean Sea). Contaminant distribution in E. spinax and C. monstrosa was PCBs > DDTs ≫ HCB while in D. licha was DDTs > PCBs ≫ HCB. Statistically significant differences were highlighted in OC levels among the species, but no such differences were found among sexes. Ratios between DDT isomers highlighted an historical input of the pesticide in the environment. For the first time was also demonstrated maternal transfer in deep water chondrichthyes, specifically in E. spinax where was highlighted that transfer of contaminants increases with increasing compound's Log Kow.

Sustainable management of living resources must reconcile biodiversity conservation and socioeconomic viability of human activities. In the case of fisheries, sustainable management design is made challenging by the complex spatiotemporal interactions between fish and fisheries. We develop a comprehensive metapopulation framework integrating data on species life‐history traits, connectivity and habitat distribution to identify priority areas for fishing regulation and assess how management impacts are spatially distributed. We trial this approach on European hake fisheries in the north‐western Mediterranean, where we assess area‐based management scenarios in terms of stock status and fishery productivity to prioritize areas for protection. Model simulations show that local fishery closures have the potential to enhance both spawning stock biomass and landings on a regional scale compared to a status quo scenario, but that improving protection is easier than increasing productivity. Moreover, the interaction between metapopulation dynamics and the redistribution of fishing effort following local closures implies that benefits and drawbacks are heterogeneously distributed in space, the former being concentrated in the proximity of the protected site. A network analysis shows that priority areas for protection are those with the highest connectivity (as expressed by network metrics) if the objective is to improve the spawning stock, while no significant relationship emerges between connectivity and potential for increased landings. Synthesis and applications . Our framework provides a tool for (1) assessing area‐based management measures aimed at improving fisheries outcomes in terms of both conservation and socioeconomic viability and (2) describing the spatial distribution of costs and benefits, which can help guide effective management and gain stakeholder support. Adult dispersal remains the main source of uncertainty that needs to be investigated to effectively apply our model to fisheries regulation.

Cetaceans can be considered good natural samplers of biodiversity due to the different hunting strategies they adopt. In this study, the stomach contents of 28 Tursiops truncatus (15 females and 13 males), stranded along Tuscany coasts, NW Mediterranean, between 2008 and 2021, were analyzed. The prey items were identified at the lowest taxonomic level possible, and assessed in terms of abundance, weight, and frequency of occurrence. The index of relative importance (IRI) was also computed. Overall, 2201 bony fishes and 406 cephalopods were identified. The trophic spectrum resulted in high diversity (69 taxa) and the prey species, 53 fishes and 16 cephalopods, live at different levels of the water column. Predation was mainly based on European hake, Merluccius merluccius (%IRI 26.9), and conger eel, Conger conger (%IRI 25.1). The abundant presence of nocturnal species, such as Conger and Ophidion, indicates the nocturnal hunting activity of the bottlenose dolphin. Furthermore, evidence is presented of the dolphins' ability to capture fish at night, taking advantage of the sound produced by these fish to locate them. Diet did not show any statistical differences among sexes, except that females preyed upon a significantly higher quantity of octopods than males.

Bottlenose dolphin Tursiops truncatus (Montagu, 1821) is a cosmopolitan species; it is found in all tropical and temperate coastal waters of the world. The bottlenose dolphins in the Mediterranean Sea mainly show coastal habits, which often lead it to interact with fishing activities. In this study, first data on the diet of specimens of T. truncatus stranded in Tuscany, north-western Mediterranean, are provided. The stomachs contents of thirty-five bottlenose dolphins were analysed; this allowed characterising the main aspects of the trophic spectrum of this coastal cetacean.

Among the main measures adopted to reduce anthropogenic impacts on elasmobranch communities, understanding the ecology of deep-sea sharks is of paramount importance, especially for potentially vulnerable species highly represented in the bycatch composition of commercial fisheries such as the blackmouth catshark Galeus melastomus. In the present work, we unravelled the first indication of population genetic structure of G. melastomus by using a novel and effective panel of nuclear, and polymorphic DNA markers and compared our results with previous findings supporting high genetic connectivity at large spatial scales. Given the lack of species-specific nuclear markers, a total of 129 microsatellite loci (Simple Sequence Repeats, SSRs) were cross-amplified on blackmouth catshark specimens collected in eight geographically distant areas in the Mediterranean Sea and North-eastern Atlantic Ocean. A total of 13 SSRs were finally selected for genotyping, based on which the species exhibited signs of weak, but tangible genetic structure. The clearcut evidence of genetic differentiation of G. melastomus from Scottish waters from the rest of the population samples was defined, indicating that the species is genetically structured in the Mediterranean Sea and adjacent North-eastern Atlantic. Both individual and frequency-based analyses identified a genetic unit formed by the individuals collected in the Tyrrhenian Sea and the Strait of Sicily, distinguished from the rest of the Mediterranean and Portuguese samples. In addition, Bayesian analyses resolved a certain degree of separation of the easternmost Aegean sample and the admixed nature of the other Mediterranean and the Portuguese samples. Here, our results supported the hypothesis that the interaction between the ecology and biology of the species and abiotic drivers such as water circulations, temperature and bathymetry may affect the dispersion of G. melastomus, adding new information to the current knowledge of the connectivity of this deep-water species and providing powerful tools for estimating its response to anthropogenic impacts.

The presence of plastic waste in the marine environment has driven the scientific community to make significant efforts to study and mitigate its possible effects. One of the critical aspects is to determine if and how an increase in ingestion events may occur as a result of the accumulation of plastic waste on the seabed. In this study, G. melastomus is examined for its ability to indirectly provide information on the amount of macroplastics accumulating on the seafloor. Plastic ingestion is explored by describing the feeding habits of the species, which have the potential to provide very useful information regarding biological or ecological issues. The diet of G. melastomus mainly consisted of cephalopods, bathypelagic fishes, and decapod crustaceans, increasing in diversity during growth. The generalist-opportunistic feeding behaviour of this species leads to the incidental ingestion of plastic particles ( N = 47, with a mean (± SD) of 1.47 ± 0.28 per specimen) which can be indirectly associated to the presence of macroplastics on the seafloor. Indeed, our results indicate a significant relationship between the amount of macroplastics present on the seabed and the frequency of ingestion of plastic particles by blackmouth catshark. We propose G. melastomus as an excellent candidate for developing a valid monitoring strategy for the presence of plastics on the seabed, as requested by the EU Marine Strategy Framework Directive.

In the Mediterranean, experiments and technical measures aimed at improving the selectivity of bottom trawl nets mostly concern modifications to the codend. Grids have been tested in various areas, but have not been adopted for management purposes so far. The present study aims to evaluate whether the adoption of diamond meshes turned by 90° (T90 configuration) and a selection grid with 2 cm bar spacing, both placed in the extension piece of a commercial bottom trawl net, can contribute in reducing the capture of specimens under the Minimum Conservation Reference Size (MCRS) for the main commercial species. The results indicated that the T90 configuration has no effect compared to the commercial net commonly used by fishers. The grid showed a reduction of the catches of European hake individuals between 11 and 19 cm Total Length (TL). However, the use of this device reduced the catch of many species, such as red mullet, deep-water rose shrimp and broad tail short fin squid. This reduction was observed also for specimens above MCRS. In conclusion, the T90 applied to the extension piece does not provide any improvement in selectivity, contrary to what has been observed when the T90 is placed at the codend. In contrast, the grid could be a possible way to increase selectivity. However, the use of grid should be further investigated to identify settings that can avoid the loss of a substantial fraction of commercial catch.

Many commercial species of the world are overexploited resulting in substantial reductions of biomass and ecological changes. Spatial-temporal restrictions of fishing activities are important measures used for the management of marine stocks. However, evidence of whether fishing bans benefit whole ecosystems is still scant. Here, we developed a food-web model approach using the Ecopath with Ecosim (EwE) model representing the Fisheries Restricted Area (FRA) of the Gulf of Lion ecosystem (CoSEGoL model) prior to the establishment of the fisheries restrictions (2006-2008) to characterize the structure and functioning of the ecosystem before and after its establishment. The constructed food-web model was, then, fitted to available time series of data from 2008 to 2016 to verify whether this FRA has contributed to recovery of target demersal species and the demersal community. The fitted model was used to explore alternative future management scenarios to explore feasible management options in order to ensure a full ecosystem recovery under climate change conditions. Both small positive and negative ecosystem changes occurred between prior and after the establishment of the FRA, potentially revealing a lack of protection efficiency and/or enforcement. Scenarios of management options under plausible climate futures revealed possible recovery of targeted species, especially European hake. The study highlighted the importance of considering trophic interactions between predators and prey to identify trade-offs and synergies in fisheries management outcomes and the need to consider both fishing and climate dynamics.

This study investigated the distribution of nematode larvae of Anisakidae and Raphidascarididae (genera Anisakis and Hysterothylacium ) in Trachurus trachurus (Linnaeus, 1758) in the Ligurian and central-northern Tyrrhenian Seas. The relationship between the number of parasites and the length and weight parameters of the fish was assessed, and the possible effect of the parasites on the condition factor was evaluated. A total of 190 T . trachurus specimens were collected in July 2019. Parasites were found in 70 individuals. A total of 161 visible larvae were collected in the viscera. Morphological analysis revealed the presence of Anisakis spp. in 55 fish and Hysterothylacium spp. in 15 fish, while 5 fish showed coinfection with both genera. The specimens subjected to PCR (n = 67) showed that 85% of the Anisakis larvae analyzed belonged to the species A. pegreffii , while the remaining 15% belonged to hybrids of A. pegreffii - A. simplex (s.s.). A total of 58% (n = 7) of the Hysterothylacium larvae analyzed belonged to the species H. fabri , while 42% belonged to the species H. aduncum . Our results support the hypothesis that infection with these parasites does not affect the condition of the fish host analyzed, and that body size and depth are major drivers in determining infection levels with Anisakid and Raphidascaridid nematodes.

Many deep-water fish populations, being K-selected species, have little resilience to overexploitation and may be at serious risk of depletion as a consequence. Sea warming represents an additional threat. In this study, the condition, or health, of several populations of common ling (Molva molva), blue ling (Molva dypterygia) and Mediterranean or Spanish ling (Molva macrophthalma) inhabiting different areas in the North Atlantic and the Mediterranean was evaluated, to shed light on the challenges these deep-water species are facing in the context of fishing activity and a warming climate. The data on the condition of Molva populations which are analysed here have been complemented with data on abundance and, for the southernmost species (Mediterranean ling), with two other health indicators (parasitism and hepato-somatic index). Despite some exceptions (e.g., common ling in Icelandic waters), this study shows that the condition of many populations of Molva species in the northeastern Atlantic and the Mediterranean Sea has worsened, a trend which, in recent decades, has usually been found to be accompanied by a decline in their abundance. In addition, the poor health status of most populations of common ling, blue ling and Mediterranean ling considered in this analysis points to a lower sustainability of these populations in the future. Overall, the health status and abundance of Molva populations in the northeastern Atlantic and the Mediterranean suggest that only some populations located in the North Atlantic may be able to rebuild, whereas the populations in southern North Atlantic and the Mediterranean, which are probably most at risk from sea warming, are facing serious difficulties in doing so. In the context of fisheries and global warming, this study's results strongly indicate that management bodies need to consider the health status of many of the populations of Molva species, particularly in southern European waters, before implementing their decisions.

The overexploitation of many marine resources and ecosystems calls for the development and implementation of measures to support their recovery and conservation. The potential contributions to support fisheries and ecosystem recovery were assessed at the local level of the three multiple-use marine protected areas (MPAs) of Cerbere-Banyuls, Medes Islands, and Cap de Creus, located in the north-western Mediterranean Sea. For each MPA, a food-web model accounting for each protection level (PL) was developed: the fully protected area (FPA), the partially protected area (PPA) and the unprotected area (UPA) surrounding the MPA. Using the resulting nine food-web models, the ecosystem structure and functioning of each PL were compared and characterized, differences and similarities within and among the three MPAs were assessed, and ecosystem response to full protection was evaluated for the three MPAs. Differences in terms of ecosystem structure and functioning were found among PLs. Overall, FPAs presented the most positive effect of protection in terms of ecosystem structure and functioning, followed by PPAs. However, the effects of protection on neighbouring UPAs were hardly noticeable. Similarities between Cerbere-Banyuls and Medes Islands MPAs were observed, while Cap de Creus MPA showed the least benefits from protection overall. These results are likely to be due to similarities in the configuration of the protected areas, the levels of enforcement and compliance, and the impact of recreational and small-scale fisheries allowed in the PPAs and UPAs. This study illustrates that well-enforced Mediterranean MPAs, even when small, can yield local positive impacts on the structure and functioning of marine ecosystems that can contribute to support local fisheries.

The current alarming state of many coastal ecosystems and fisheries calls for the development of tools to support recovery of exploited stocks, ensure their sustainable exploitation and protect marine ecosystems. Multi-zone Marine Protected Areas (MPAs) are often advocated to reconcile conservation and fisheries benefits. However, while there is a consensus about the ecological benefits whether such types of MPAs can really provide both benefits is still uncertain. Here, we analysed three existing Northwestern Mediterranean multi-zone MPAs (Cerbère-Banyuls, Cap de Creus and Medes Islands) using a comparative temporal ecosystem modelling approach to assess their effectiveness over time in recovering marine resources and ecosystem in the area. Our results showed differences in the ecological effectiveness of the three MPAs, potentially driven by MPA design, management and implementation features. Temporal increases of benefits were small, whenever detected, and showed slight recoveries of some target species and ecological indicators, mostly in Cerbère-Banyuls and Medes Islands MPAs. Our results confirm the benefits of protection to coastal marine resources and ecosystems when MPAs are enforced but highlight the current limitations of the three MPAs due to their small size and the significant impacts of small-scale and recreational fisheries. This study illustrates the capability to evaluate protection effects of small multi-zone MPAs with an ecosystem modelling perspective and represents the baseline to develop future scenarios of alternative management options to foster ecosystem recovery and resource rebuilding in the studied MPAs.

Small-scale fisheries represent one of the most important fishing sectors in Italy, comprising 60% of Italian fishing vessels, half the fishers and 16% of national landings. Despite their high social, economic and cultural value, they have been neglected by national and international policies, resulting in a poor outlook for the near future. In this chapter, we provide an overview of recent trends, the status of small-scale fisheries in Italy and major, current threats to the sector. These include: competition from large-scale fisheries, rivalry with illegal, unreported and unregulated fishing, recreational fisheries, ecological changes and the degradation of ecosystems. The evolution of international and national legislation affecting small-scale fisheries is also outlined, with examples of opportunities and challenges in two complementary case studies from the Tyrrhenian and Ionian Seas. The analysis is mainly focused on participatory, bottom-up management tools (local management plans and co-management schemes). The resilience of small-scale fisheries' socio-ecological systems, mainly related to fishers' capability of adapting their strategies to multiple sets of conditions over time and across areas, is also discussed. We conclude our analysis by investigating actions which could be implemented to allow the unexploited economic, social and cultural potential of small-scale fisheries in Italy to be developed.

Reducing the impact on vulnerable species through changes in fishing practices, such as the spatial or temporal avoidance of certain areas, is key to increase the ecological sustainability of fisheries. However, it is often hampered by the availability of sufficiently detailed data and robust indicators. Existing trawl surveys are a cost-effective data source to assess the vulnerability of fishing areas based on the quantities of vulnerable species caught. We developed a biological traits-based approach to the vulnerability of demersal assemblages using commercial trawl catch data. An expert-based approach identified a set of biological traits that are expected to condition the species' response to trawling impact and are combined to produce the vulnerability index ranked into four levels (low, moderate, high and very high vulnerability). The approach was tested in four southern European fishing grounds showing evidence of over-exploitation, through catches being dominated by species of relatively low vulnerability to fishing impacts. The general distribution of species' biomass amongst vulnerability groups was highly homogenous across case studies, despite local differences in fishing fleet structure, target species and fishing depths. Within all areas the species with moderate vulnerability dominated and, in most instances, species of "very high" vulnerability were not recorded. Nevertheless, differences emerged when comparing the proportions of highly vulnerable species in the catches. Variability in vulnerability level of the catch was also observed at small spatial scales, which was principally explained by differences in habitat type and depth and, secondarily, by fishing effort. In fine mud in the shallower areas there was a higher presence of low vulnerable fauna. Furthermore, vulnerable organisms decreased in their presence in sandier substrates on the continental shelf. The spatial heterogeneity in assemblage vulnerability composition encourages the potential for adoption of this index in the spatial management of fishing grounds aiming at ensuring a sustainable exploitation by mitigating trawl impacts on the most vulnerable components of the demersal assemblages.

Mediterranean is one of the world's most heavily exploited seas, where more than 90 % of the assessed fish stocks are overfished. In this basin small scale fisheries (SSFs) play a major socioeconomic role in terms of fleet size, number of jobs and amount and value of landings. Passive nets (chiefly gillnets (GNs) and trammel nets (TNs)) are the most common fishing gears employed by SSFs. Since they are considered more selective and less harmful to stocks and habitats than other gears such as trawls, their selectivity and impacts are less explored. This study was performed to provide an accurate description of the selectivity of Mediterranean GNs and TNs in relation to legal provisions and the biological features of their most common target species. It was found that the minimum conservation reference size (MCRS) set for certain species is well under their length at first maturity (LFM) and does not contribute to sustainability. Moreover, a thorough overview of the technical features of Mediterranean passive nets highlighted that they catch mature individuals above the MCRS and are therefore size-selective. This characteristic goes a considerable way towards achieving several conservation priorities: to reduce fishing mortality, to minimize the capture of juveniles and discards, to spare sexually immature individuals, thus improving spawning stock biomass and increasing the yield per recruit while attenuating the impacts on benthic ecosystems.