Anthropogenic activities are driving an increasing flux of rare earth elements (REE) into environmental compartments, raising concerns about their biological impact, particularly on microorganisms that sustain ecosystem functioning. Here, we provide a systematic assessment of the toxicity of all 16 REE toward Pseudomonas putida KT2440, a soil bacterium that can use these metals as enzyme cofactors. Dose-response growth inhibition assays revealed high sensitivity to light REE. Toxicity correlated strongly with ionic radius, with IC50 values ranging from 0.3 µM for lanthanum to 10 µM for scandium. Serial propagation of P. putida under gradually increasing REE stress yielded resistant populations, from which two stably resistant strains were isolated. Genome resequencing showed that both strains carried a single mutation in uxpB, encoding an alkaline phosphatase. Gene deletion and overexpression experiments, together with phosphatase activity measurements, confirmed the involvement of uxpB in REE resistance. Our findings reveal a previously unrecognized mechanism of tolerance to REE, suggesting that mutations enhancing phosphatase activity promote phosphate release from organic phosphorus compounds, thereby reducing REE bioavailability through phosphate-mediated complexation and/or immobilization.

Microbial extracellular polymeric substances (EPS) defend against arsenite (As(III)) stress, yet the metabolic drivers remain unclear. Using Clostridium acidisoli CK74X, a highly efficient arsenic-methylating strain from a mining area with strong resistance to arsenic, we investigated how As(III) exposure reshaped metabolism to influence EPS function. Sorption experiments and spectroscopic analyses revealed complementary roles of loosely‑bound and tightly‑bound EPS layers in As(III) sorption and transfer. At low As(III) concentrations (0.1, 1 μM), upregulation of type II polyketide biosynthesis and one-carbon metabolism promoted incorporation of aromatic and methyl groups into the EPS, enhancing As(III) bonding. High As(III) stress (10 μM) disrupted porphyrin and amino acid metabolism, suppressing EPS formation and function. Genomic analysis identified the arsM gene and a two‑step SAH recycling pathway (mtnN + luxS) that generates the AI‑2 quorum‑sensing molecule. Multiple perturbed pathways converged on S-adenosylmethionine (SAM) metabolism, which emerges as a central metabolic hub, executing a dual defense strategy: intracellular methylation and EPS modification. Based on these findings, we propose a conceptual model in which SAM‑driven EPS modulation serves as a targetable node for designing EPS‑based biosorbents, though further research on purification, regeneration, and field validation is needed. Overall, this study establishes a mechanistic link between metabolic regulation and EPS functional adaptation, advancing both fundamental understanding and bioremediation technologies.

The use of lithium (Li) in decarbonization strategies has positioned it as a central component of modern technological advances, particularly in battery applications. However, the increasing demand for Li has raised concerns about its environmental consequences, which are poorly documented. This study aimed to fill this knowledge gap by examining the impact of Li on soil bacterial/fungal communities. Using a microcosm approach, we explored the impacts of increasing Li concentrations on both microbial community structure and activities. Our results revealed significant changes in bacterial/fungal communities, particularly in the bacterial communities. Most of the indicator species were negatively correlated with the Li gradient, reinforcing the harmful effect of Li. Proteobacteria dominated at low concentrations, whereas Firmicutes were the most abundant at high concentrations. OTUs affiliated with the genus Alicyclobacillus represented >29 % of the total affiliated OTUs at the highest Li concentrations. Moreover, Alicyclobacillus fastidiosus showed resilience and specific adaptation to Li. Fungal communities showed less pronounced changes, with Mucoromycota remaining the dominant phylum at all concentrations. Nevertheless, some genera presented correlations with Li concentration, particularly the plant mutualists Leptodontidium, Oidiodendron, and Solicoccozyma. In addition, rapid decreases in several enzymatic activities crucial for the functioning of the carbon, nitrogen and phosphorus cycles were noted. Accordingly, microbial respiration was also impacted by high Li concentrations. Finally, a correlative analysis linked the decreases in enzyme activity to decreases in the abundances of both Proteobacteria and Ascomycota. These results underline the multiple impacts of Li on bacterial/fungal communities, highlighting both structural alterations and changes in microbial activities.

The increasing use of lithium (Li) in emerging technologies has prompted concerns about its effects on living microorganisms. To enhance our understanding of the bacterial cytotoxicity of Li, we conducted a deletomic analysis using the bacterial model Escherichia coli. A screen of 3,985 knockout mutants under Li stress highlighted 27 Li-sensitive and 15 Li-resistant mutants. The synthesis of peptidoglycan and the capsule, along with the secretion of colanic acid, contributed to resistance to Li. Ribosomes and the stringent response also seem to play a role in mitigating Li cytotoxicity. A cross-metal comparison revealed that the Li-sensitive phenotype of the mutants was shared with Ca, whereas the resistant phenotype was shared with Mg, Na and K. Moreover, this allowed the identification of ΔacrA as a Li sensitivity-specific mutant. AcrA is a subunit of the AcrAB-TolC efflux pump, which is responsible for the efflux of various xenobiotics. We demonstrate that ΔacrB-ΔtolC accumulates approximately 1.5 times more Li than the WT, indicating that this pump could also facilitate the efflux of Li. This study offers a more comprehensive insight into the mechanisms involved in the Li response in E. coli.

The increasing use of lithium (Li) in new technologies raises the question of its impact on living microorganisms. In the present study, we aimed to identify putative Li targets and resistance mechanisms in the yeast model Saccharomyces cerevisiae using a deletomic approach based on the screening of a collection of 4733 knockout mutants under Li exposure. This screening highlighted 60 mutants resistant to Li and 124 mutants sensitive to Li. Through functional enrichment analyses, transport systems were identified as playing a central role in cell resistance to toxic concentrations of Li. In contrast, the AKT/protein kinase B family, signal transduction or cell communication were identified as potential toxic targets of Li. The majority of the mutants with a Li-sensitive phenotype were also sensitive to other alkali and alkaline earth metals, whereas the Li-resistance phenotype was mostly resistant to Na but poorly resistant to other metals. A comparison with the results of deletomics studies carried out in the presence of other metals highlighted Li-specific phenotypes. Three genes (NAM7, NMD2, UPF3) of the nonsense-mediated decay pathway were specifically involved in resistance to Li. In contrast, mutants with the NCA2, SPT20, GCN5, YOR376W, YPK3, and DCW1 genes deleted were specifically resistant to Li. These genes encode various functions from putative mannosidase to constitution of the Spt-Ada-Gcn5 acetyltransferase complex. This work provides a better understanding of potential specific resistance mechanisms and cellular targets of Li in yeast.

Anthropogenic activities have led to a significant accumulation of Pb in the environment, posing a threat to ecosystems. Iron oxides that display magnetic properties are ubiquitous in the environment and Pb partitioning onto these minerals is considered one of the most critical geochemical processes controlling its environmental fate. In anoxic environments, iron oxides undergo redox cycling due to biotic and abiotic routes, resulting in their transformation/dissolution and evolution of their magnetic characteristics. However, there is still a lack of knowledge on the impact of Pb on the dynamic of iron oxides bioreduction. Furthermore, there is little information available regarding the nature of biogenic minerals and their magnetic signatures. Here we incubated Pb-bearing ferrihydrites (Fh_Pb) with various Pb/(Fe + Pb) molar ratios (i.e., 0, 2 and 5%) with the iron-reducing bacterium Shewanella oneidensis MR-1, for 21 days. XRD analyses of the initial Fh_Pb displayed characteristic features of Fh and a decrease of magnetization in the presence of Pb. During the bio-reduction process, Pb doping led to a drop in the rate and extent of reduction. At the end of the incubation period, the analysis of the aqueous solutions revealed a minor proportion of Pb in solution, indicating that a significant proportion of the Pb is sorbed onto the biogenic minerals. Magnetite (95%) and siderite (5%) formed during the bioreduction of Fh, while magnetite (-80%) and goethite (-20%) precipitated in the presence of Pb as revealed by transmission Mo??ssbauer spectroscopy. Furthermore, the size of the magnetite particles decreased from about 11 nm in absence of Pb to 6 nm with 2% of Pb-bearing, while 5% of Pb led to particles too small to be quantified with our TEM measurements. The combined effect of the decrease in particle size of magnetite, substitution of Pb and the precipitation of goethite in the Pb-dopped assay led to a significant decrease of magnetization at room temperature. Overall, this study highlights the effect of Pb on iron oxides bio-reduction and transformation processes and the sensitivity of magnetism to serve as a monitoring method.

Background: Mobile genetic elements (MGEs) are widely involved in the dissemination of antibiotic resistance genes and some of them, such as the integrative and conjugative element SXT, are even induced by specific antibiotics at sub-lethal concentrations. Objectives: This work explores collateral effects of a broad range of antibiotics on the mobility of the SXTMO10 element using a specifically designed high-throughput screening test. Methods: Twenty-five promoters involved in the mobility of SXT and six artificial constitutive promoters were transcriptionally fused to luxCDABE bioluminescent genes and introduced into Escherichia coli strains with or without SXT to build whole-cell biosensors for a large-scale screening involving 48 antibiotics. A bioluminescent assay implementing a classical agar diffusion approach was coupled to an automated data processing pipeline developed to extract and analyse luminescence data fromover 2000 antibiotic/biosensor combination profiles. Results: In addition to quinolones previously reported as inducing the expression of SXT mobility genes, we found that specific antibiotics belonging to other classes, such as imipenem and azithromycin, also behave as inducers. The use of a control set of constitutive biosensors also revealed an unexpected intricate relationship between cell respiration and light production that allowed the identification of antibiotics interfering with the respiration process. Conclusions: The effect of antibiotics goes beyond the interaction with their primary cell targets and may lead to adverse effects such as triggering the dissemination of resistance by MGEs, sometimes in unpredictable ways. Identifying such MGE-triggering antibiotics is of prime importance for better controlling collateral effects during therapy.

The significant accumulation of Pb from anthropogenic activities threatens environmental ecosystems. In the environment, iron oxides are one of the main carriers of Pb. Thus, the redox cycling of iron oxides, which is due to biotic and abiotic pathways, and which leads to their dissolution or transformation, controls the fate of Pb. However, a knowledge gap exists on the bioreduction in Pb-bearing ferrihydrites, secondary-mineral precipitation, and Pb partitioning during the bioreduction/oxidation/bioreduction cycle. In this study, Pb-bearing ferrihydrite (Fh_Pb) with various Pb/(Fe+Pb) molar ratios (i.e., 0, 2, and 5%) were incubated with the iron-reducing bacterium Shewanella oneidensis MR-1 for 7 days, oxidized for 7 days (atmospheric O2), and bioreduced a second time for 7 days. Pb doping led to a drop in the rate and the extent of the reduction. Lepidocrocite (23–56%) and goethite (44–77%) formed during the first reduction period. Magnetite (72–84%) formed during the second reduction. The extremely-low-dissolved and bioavailable Pb concentrations were measured during the redox cycles, which indicates that the Pb significantly sorbed onto the minerals that were formed. Overall, this study highlights the influence of Pb and redox cycling on the bioreduction of Pb-bearing iron oxides, as well as on the nature of the secondary minerals that are formed.

Lake sediments are natural receptors for a wide range of anthropogenic contaminants including organic matter and toxicants such as trace metals, polycyclic aromatic hydrocarbons, polychlorinated biphenyls that accumulate over time. This contamination can impact benthic communities, including microorganisms which play a crucial role in biogeochemical cycling and food-webs. The present survey aimed at exploring whether anthropogenic contamination, at a large lake scale, can influence the diversity, structure and functions of microbial communities associated to surface sediment, as well as their genetic potential for resistance to metals and antibiotics. Changes in the characteristics of these communities were assessed in surface sediments collected in Lake Geneva from eight sampling sites in October 2017 and May 2018. These sampling sites were characterized by a large concentration range of metal and organic compound contamination. Variation between the two sampling periods were very limited for all sampling sites and measured microbial parameters. In contrast, spatial variations were observed, with two sites being distinct from each other, and from the other six sites. Benthic communities from the most contaminated sampling site (Vidy Bay, near the city of Lausanne) were characterized by the lowest bacterial and archaeal diversity, a distinct community composition, the highest abundance of antibiotic resistance genes and functional (respiration, denitrification, methanogenesis, phosphatase, and beta-glucosidase) activity levels. The second sampling site which is highly influenced by inputs from the Rhône River, exhibited low levels of diversity, a distinct community composition, high abundance of antibiotic resistance genes and the highest bacterial abundance. Overall, our results suggest that local anthropogenic contamination, including organic matter and toxicants, is a major driver of the diversity and functioning of sediment-microbial communities in Lake Geneva. This highlights the need to consider benthic microbial communities and a suite of complementary ecotoxicological endpoints for more effective environmental risk assessments of contaminants in lake sediments.

Metal oxide nanoparticles (NPs), and among them metal oxides Quantum Dots (QDs), exhibit a multifactorial toxicity combining metal leaching, oxidative stress and possibly direct deleterious interactions, the relative contribution of each varying according to the NP composition and surface chemistry. Their wide use in public and industrial domains requires a good understanding and even a good control of their toxicity. To address this question, we engineered ZnO QDs with different surface chemistries, expecting that they would exhibit different photo-induced reactivities and possibly different levels of interaction with biological materials. No photo-induced toxicity could be detected on whole bacterial cell toxicity assays, indicating that ROS-dependent damages, albeit real, are hidden behind a stronger source of toxicity, which was comforted by the fact that the different ZnO QDs displayed the same level of cell toxicity. However, using in vitro DNA damage assays based on quantitative PCR, significant photo-induced reactivity could be measured precisely, showing that different NPs exhibiting similar inhibitory effects on whole bacteria could differ dramatically in terms of ROS-generated damages on biomolecules. We propose that direct interactions between NPs and bacterial cell surfaces prime over any kind of intracellular damages to explain the ZnO QDs toxicity on whole bacterial cells.

Ever since the discovery of the first rare earth element (REE)-dependent enzyme, the physiological role of lanthanides has become an emerging field of research due to the potential environmental implications and biotechnological opportunities. In Pseudomonas putida KT2440, the two pyrroloquinoline quinone-dependent alcohol dehydrogenases (PQQ-ADHs) PedE and PedH are inversely produced in response to La3+-availability. This REE-switch is orchestrated by a complex regulatory network including the PedR2/PedS2 two-component system and is important for efficient growth on several alcoholic volatiles. As P. putida is exposed to a broad variety of organic compounds in its natural soil habitat, the cellular responses towards La3+ during growth on various carbon and energy sources were investigated with a differential proteomic approach. Apart from the Ca2+-dependent enzyme PedE, the differential abundance of most other identified proteins was conditional and revealed a substrate specificity. Concomitant with the proteomic changes, La3+ had a beneficial effect on lag-phases while causing reduced growth rates and lower optical densities in stationary phase during growth on glycerol. When these growth phenotypes were evaluated with mutant strains, a novel metabolic route for glycerol utilization was identified that seems to be functional in parallel with the main degradation pathway encoded by the glpFKRD operon. The newly discovered route is initiated by PedE and/or PedH, which most likely convert glycerol to glyceraldehyde. In the presence of lanthanum, glyceraldehyde seems to be further oxidized to glycerate, which, upon phosphorylation to glycerate-2-phosphate by the glycerate kinase GarK, is finally channelled into the central metabolism. Importance The biological role of rare earth elements has long been underestimated and research has mainly focused on methanotrophic bacteria. We have recently demonstrated that P. putida , a plant growth promoting bacterium that thrives in the rhizosphere of various feed crops, possesses a REE-dependent alcohol dehydrogenase (PedH), but knowledge about lanthanide-dependent effects on physiological traits in non-methylotrophic bacteria is still scarce. This study demonstrates that the cellular response of P. putida KT2440 towards La3+ is mostly substrate specific and that during growth on glycerol, La3+ has a severe effect on growth parameters. We provide compelling evidence that the observed physiological changes are linked to the catalytic activity of PedH and thereby identify a novel route for glycerol metabolism in this biotechnological relevant organism. Overall, these findings demonstrate that lanthanides can alter important physiological traits of non-methylotrophic bacteria, which might consequently influence their competitiveness during colonization of various environmental niches.

Sediment microbial communities were exposed for 21 days to an environmental concentration of copper to assess Cu-induced composition changes and resulting effects on microbial sensitivity to acute Cu and As toxicity. Chronic Cu exposure reduced the diversity of the bacterial and archaeal communities from Day 0 to Day 21. The pollution-induced community tolerance concept (PICT) predicts that loss of the most sensitive taxa and gain of more tolerant ones should increase the capacity of Cu-exposed communities to tolerate acute Cu toxicity. Although diversity loss and functional costs of adaptation could have increased their sensitivity to subsequent toxic stress, no increased sensitivity to As was observed. PICT responses varied according to heterotrophic activity, selected as the functional endpoint for toxicity testing, with different results for Cu and As. This suggests that induced tolerance to Cu and As was supported by different species with different metabolic capacities. Ecological risk assessment of contaminants would gain accuracy from further research on the relative contribution of tolerance acquisition and co-tolerance processes on the functional response of microbial communities.

In the soil-dwelling organism Pseudomonas putida KT2440, the rare earth element (REE)-utilizing, and pyrroloquinoline quinone (PQQ)-dependent ethanol dehydrogenase PedH is part of a periplasmic oxidation system that is vital for growth on various alcoholic volatiles. Production of PedH and its Ca2+-dependent counterpart PedE is inversely regulated in response to lanthanide (Ln3+) bioavailability, a mechanism termed the REE-switch. In the present study, we demonstrate that copper, zinc, and in particular, iron availability influences this regulation in a pyoverdine-independent manner by increasing the minimal Ln3+ concentration required for the REE-switch to occur by several orders of magnitude. A combined genetic and physiological approach reveals that an ABC-type transporter system encoded by the gene cluster pedA1A2BC is essential for efficient growth on 2-phenylethanol with low (nanomolar) Ln3+ concentrations. In the absence of pedA1A2BC, a ∼100-fold higher La3+-concentration is needed for PedH-dependent growth but not for the ability to repress growth based on PedE activity. From these results, we conclude that cytoplasmic uptake of lanthanides through PedA1A2BC is essential to facilitate REE-dependent growth on 2-phenylethanol under environmental conditions with poor REE bioavailability. Our data further suggest that the La3+/Fe2+/3+ ratio impacts the REE-switch through the mismetallation of putative La3+-binding proteins, such as the sensor histidine kinase PedS2, in the presence of high iron concentrations. As such, this study provides an example for the complexity of bacteria-metal interactions and highlights the importance of medium compositions when studying physiological traits in vitro in particular in regard to REE-dependent phenomena.

AbstractEver since the discovery of the first rare earth element (REE)-dependent enzyme, the physiological role of lanthanides has become an emerging field of research due to the potential environmental implications and biotechnological opportunities. InPseudomonas putidaKT2440, the two pyrroloquinoline quinone-dependent alcohol dehydrogenases (PQQ-ADHs) PedE and PedH are inversely produced in response to La3+-availability. This REE-switch is orchestrated by a complex regulatory network including the PedR2/PedS2 two-component system and is important for efficient growth on several alcoholic volatiles. AsP. putidais exposed to a broad variety of organic compounds in its natural soil habitat, the cellular responses towards La3+during growth on various carbon and energy sources were investigated with a differential proteomic approach. Apart from the Ca2+-dependent enzyme PedE, the differential abundance of most other identified proteins was conditional and revealed a substrate specificity. Concomitant with the proteomic changes, La3+had a beneficial effect on lag-phases while causing reduced growth rates and lower optical densities in stationary phase during growth on glycerol. When these growth phenotypes were evaluated with mutant strains, a novel metabolic route for glycerol utilization was identified that seems to be functional in parallel with the main degradation pathway encoded by theglpFKRDoperon. The newly discovered route is initiated by PedE and/or PedH, which most likely convert glycerol to glyceraldehyde. In the presence of lanthanum, glyceraldehyde seems to be further oxidized to glycerate, which, upon phosphorylation to glycerate-2-phosphate by the glycerate kinase GarK, is finally channelled into the central metabolism.ImportanceThe biological role of rare earth elements has long been underestimated and research has mainly focused on methanotrophic bacteria. We have recently demonstrated thatP. putida,a plant growth promoting bacterium that thrives in the rhizosphere of various feed crops, possesses a REE-dependent alcohol dehydrogenase (PedH), but knowledge about lanthanide-dependent effects on physiological traits in non-methylotrophic bacteria is still scarce. This study demonstrates that the cellular response ofP. putidaKT2440 towards La3+is mostly substrate specific and that during growth on glycerol, La3+has a severe effect on several growth parameters. We provide compelling evidence that the observed physiological changes are linked to the catalytic activity of PedH and thereby identify a novel route for glycerol metabolism in this biotechnological relevant organism. Overall, these findings demonstrate that lanthanides can alter important physiological traits of non-methylotrophic bacteria, which might consequently influence their competitiveness during colonization of various environmental niches.

In Pseudomonas putida KT2440, two pyrroloquinoline quinone-dependent ethanol dehydrogenases (PQQ-EDHs) are responsible for the periplasmic oxidation of a broad variety of volatile organic compounds (VOCs). Depending on the availability of rare earth elements (REEs) of the lanthanide series (Ln(3+)), we have recently reported that the transcription of the genes encoding the Ca2+-utilizing enzyme PedE and the Ln(3+)-utilizing enzyme PedH are inversely regulated. With adaptive evolution experiments, site-specific mutations, transcriptional reporter fusions, and complementation approaches, we now demonstrate that the PedS2/PedR2 (PP_2671/PP_2672) two-component system (TCS) plays a central role in the observed REE-mediated switch of PQQ-EDHs in P. putida. We provide evidence that in the absence of lanthanum (La3+), the sensor histidine kinase PedS2 phosphorylates its cognate LuxR-type response regulator PedR2, which in turn not only activates pedE gene transcription but is also involved in repression of pedH. Our data further suggest that the presence of La3+ lowers kinase activity of PedS2, either by the direct binding of the metal ions to the periplasmic region of PedS2 or by an uncharacterized indirect interaction, leading to reduced levels of phosphorylated PedR2. Consequently, the decreasing pedE expression and concomitant alleviation of pedH repression causes-in conjunction with the transcriptional activation of the pedH gene by a yet unknown regulatory module-the Ln(3+)-dependent transition from PedE- to PedH-catalyzed oxidation of alcoholic VOCs. IMPORTANCE The function of lanthanides for methanotrophic and methylotrophic bacteria is gaining increasing attention, while knowledge about the role of rare earth elements (REEs) in nonmethylotrophic bacteria is still limited. The present study investigates the recently described differential expression of the two PQQ-EDHs of P. putida in response to lanthanides. We demonstrate that a specific TCS is crucial for their inverse regulation and provide evidence for a dual regulatory function of the LuxR-type response regulator involved. Thus, our study represents the first detailed characterization of the molecular mechanism underlying the REE switch of PQQ-EDHs in a nonmethylotrophic bacterium and stimulates subsequent investigations for the identification of additional genes or phenotypic traits that might be coregulated during REE-dependent niche adaptation.

Whole-cell bioreporters are routinely operated as sentinels for monitoring the concentration of bioavailable and/ or toxic metal ions (M) in aquatic media. Despite the importance of metal bioreporters in environmental risk assessment, their use is often limited to the establishment and exploitation of calibration curves relating bioreporters signal and target metal concentration. In this work, a physicochemical rationale is elaborated for the response of metal-sensitive whole-cell bioreporters beyond the restrictive representation of metal partitioning equilibrium at the microorganism-solution interface. The analysis is conducted under poorly metal complexing conditions for steady-state bioreporter functioning defined by a rate of photons production independent of time. The theoretical framework deciphers how this rate is determined by (i) metal biouptake dynamics with contributions from metal conductive diffusion to the cell surface and metal internalisation kinetics, (ii) formation kinetics and stability of intracellular complexes between M and transcriptional regulators, and (iii) the flux of emitted photons resulting from biochemical reactions initiated after activation of transcriptional regulators. The formalism enables quantitative evaluation of bioreporters performance depending on interfacial cell electrostatics, cell concentration and cell metal-adsorption features. The theory is supported by experimental data on cadmium detection by genetically modified luminescent Escherichia coil bioreporters exhibiting various lipopolysaccharidic surface structures.

ABSTRACT The oxidation of alcohols and aldehydes is crucial for detoxification and efficient catabolism of various volatile organic compounds (VOCs). Thus, many Gram-negative bacteria have evolved periplasmic oxidation systems based on pyrroloquinoline quinone-dependent alcohol dehydrogenases (PQQ-ADHs) that are often functionally redundant. Here we report the first description and characterization of a lanthanide-dependent PQQ-ADH (PedH) in a nonmethylotrophic bacterium based on the use of purified enzymes from the soil-dwelling model organism Pseudomonas putida KT2440. PedH (PP_2679) exhibits enzyme activity on a range of substrates similar to that of its Ca2+-dependent counterpart PedE (PP_2674), including linear and aromatic primary and secondary alcohols, as well as aldehydes, but only in the presence of lanthanide ions, including La3+, Ce3+, Pr3+, Sm3+, or Nd3+. Reporter assays revealed that PedH not only has a catalytic function but is also involved in the transcriptional regulation of pedE and pedH, most likely acting as a sensory module. Notably, the underlying regulatory network is responsive to as little as 1 to 10 nM lanthanum, a concentration assumed to be of ecological relevance. The present study further demonstrates that the PQQ-dependent oxidation system is crucial for efficient growth with a variety of volatile alcohols. From these results, we conclude that functional redundancy and inverse regulation of PedE and PedH represent an adaptive strategy of P. putida KT2440 to optimize growth with volatile alcohols in response to the availability of different lanthanides. IMPORTANCE Because of their low bioavailability, lanthanides have long been considered biologically inert. In recent years, however, the identification of lanthanides as a cofactor in methylotrophic bacteria has attracted tremendous interest among various biological fields. The present study reveals that one of the two PQQ-ADHs produced by the model organism P. putida KT2440 also utilizes lanthanides as a cofactor, thus expanding the scope of lanthanide-employing bacteria beyond the methylotrophs. Similar to the system described in methylotrophic bacteria, a complex regulatory network is involved in lanthanide-responsive switching between the two PQQ-ADHs encoded by P. putida KT2440. We further show that the functional production of at least one of the enzymes is crucial for efficient growth with several volatile alcohols. Overall, our study provides a novel understanding of the redundancy of PQQ-ADHs observed in many organisms and further highlights the importance of lanthanides for bacterial metabolism, particularly in soil environments.