The combined use of field data on anchovy ( Engraulis encrasicolus , Linnaeus, 1758) egg distribution in the Central Mediterranean Sea on both sides of the Strait of Sicily (Sicilian–Maltese and Tunisian waters) and Lagrangian simulations were used to assess the pattern of connectivity between these two sub-areas as a result of spawning activity. The field data were collected during ichthyoplankton surveys carried out in summer 2008 and 2010. The simulation runs showed considerable (up to 20%) rates of particle exchange in both directions (from Tunisian to Sicilian–Maltese waters and vice versa). However, considering the typical high mortality rates of anchovy early stages, the actual larval exchange rates across the Sicily Strait are supposed to be significantly lower (<1%), supporting the hypothesis that the anchovy population sub-units in the Strait of Sicily can be considered as separate fish stocks for the evaluation of their optimum exploitation rates.

The complex interactions between surface circulation and coastal and continental shelf morphology, as well as the presence of temperature and salinity gradients, make the Central Mediterranean an area characterized by high degree of ecosystem patchiness. The well-known effect of the physical environment in shaping community structure leads us to hypothesize the presence of differences in the pelagic fish community organization. Based on the analysis of specific environmental factors, nine sectors were identified and possible differences in the relative proportions of some key pelagic species were assessed by analysing the acoustic data collected during two surveys carried out in the summer period. The obtained results evidenced a clear separation between the northern (Strait of Sicily) and southern parts (Tunisian waters) of the study area, highlighting the strong effect of temperature on the proportions of some species. Furthermore, even if most of the variability in fish assemblages was due to the differences between the northern and southern parts, specific spatially nested differences were identified, highlighting a kind of hierarchical structure in the pelagic habitat, definitely allowing fish species to find their optimum in a high variable ecosystem, thus improving the system's resilience.

The study presents the biomass and spatial distribution of Sardinella aurita in the Libyan, Maltese and southern Sicily waters, estimated during four acoustic surveys in summer 2008 and 2010. Strong differences in terms of both spatial distribution and total biomass between years and areas were found, with higher total biomass in 2010 than in 2008 in both southern and northern areas of the central Mediterranean. Habitat suitability and changes in the spatial dynamics of round sardinella among areas and years are then explored in relation to total biomass variation and environmental factors. The area of presence of S. aurita increased in the Maltese and Sicilian waters in 2010 with respect to 2008, while most of the total biomass observed in the two years occupied the same proportion of the continental shelf in Libyan waters. The link between environmental conditions and S. aurita area of presence and aggregation was investigated by means of generalized additive models (GAM). The application of GAM singled out the key role of depth and temperature in driving higher round sardinella aggregations, as they were able to explain in both years about the 48% of total deviance in the case of strictly positive values. Favourable habitat for round sardinella was found in waters shallower than 60 m depths, with a clear peak around 40 m depth. Favourable temperature values were above 22°C for presence/absence case and above 24°C when GAM was applied on strictly positive values. Overall S. aurita biomass and distribution were discussed in the light of the classical models proposed to describe the fish spatial dynamics in relation to an increase in total biomass.

The effective management and conservation of fishery resources requires knowledge of their spatial distribution and notably of their critical life history stages. Predictive modelling of the European hake (Merluccius merluccius L., 1758) distribution was developed in the south-central Mediterranean Sea by means of historical fisheries-independent databases available in the region. The study area included the international waters of the south-central Mediterranean Sea and the territorial waters of Italy, Malta, Tunisia and Libya. Distribution maps of predicted population abundance index, and probabilistic occurrence of recruits and large adults were obtained by means of generalized additive models using depth and seafloor characteristics as predictors. Presence/absence data of the two life stages was obtained using threshold values applied to the mean weight of the survey catches. Modelling results largely matched previously reported knowledge on habitat preference of the species and its critical life phases. Hake recruits showed an occurrence peak at 200 m depth with preference for soft bottoms. Large adults preferred deeper and harder bottom substrates. Prediction maps allowed to improve our knowledge on the distributional patterns of one of the most important shared stocks in the south-central Mediterranean. This knowledge is essential for an appropriate development of regional-spatial-based management plans.

Most of the studies carried out in the past on economically important fish species rely on single species approach. Ecosystem dynamics are characterized by complex interaction among species, sharing common habitat needs and thus forming characteristic assemblages. The analysis of spatio-temporal variability of fish community, coupled to the analysis of spatial indices, provides a synthetic view of the fish community status evidencing, if any, the way a community changes. Such considerations drive also to the development of ecosystem-based fishery management paradigm. In the present study changes in pelagic fish community structure in an upwelling ecosystem of the central Mediterranean Sea during the last 10 years was analysed, by focusing the attention on the five most abundant small pelagic species: Engraulis encrasicolus, Sardina pilchardus, Sardinella aurita, Trachurus trachurus and Boops boops. Our results evidenced a quite stable community structure, characterized by spatial occupation strongly driven by ecosystem characteristics and modulated according to specie-specific behaviour. Obtained results lead us to hypothesize that the observed stability of community could be linked to the presence of different environments leading to efficient space partitioning and resources utilization among species.

An analysis of the influence of environmental conditions on the pelagic fish community structure and species distribution in two areas of the Central Mediterranean sea, the Sicilian–Maltese and the Libyan continental shelves, is presented. The Libyan waters suffer from the lack of historical information on these species, and a thorough characterisation of the pelagic fish community is missing for the entire study area. In summer 2008, two multidisciplinary surveys permitted for the first time the collection of acoustic, biological, and hydrological data in the Libyan, Maltese, and Italian waters of the Central Mediterranean. Satellite and in situ measurements were used here to describe the environmental conditions characterising the two ecosystems, and to analyse the relationships between environmental factors and pelagic community structure, and pelagic fish biomass. The datasets support the hypothesis of a more favourable feeding ground for pelagic fishes in the southwestern part of the study area, close to the Gulf of Gabes, characterised by a larger continental shelf and a higher productivity than the northern and the eastern sides. Environmental gradients, such as the ones related to temperature and salinity, may influence in different ways the pelagic fish community structure in the two areas. The Libyan waters, where environmental gradients develop longitudinally in about 700 nmi, likely produce a better spatially structured fish community. In the Sicilian–Maltese area, characterised by stronger environmental gradients and shorter longitudinal extension (150 nmi), such spatial structure is less evident. In this latter area a higher spatial overlap among pelagic species is mainly linked to the limited continental shelf and the spatially compressed environmental gradients.

The Strait of Sicily plays a crucial role in determining the water-mass exchanges and related properties between the western and eastern Mediterranean. Hydrographic measurements carried out from 1998 to 2013 allowed the identification of the main water masses present in the Strait of Sicily: a surface layer composed of Atlantic water (AW) flowing eastward, intermediate and deep layers mainly composed of Levantine intermediate water (LIW), and transitional eastern Mediterranean deep water (tEMDW) flowing in the opposite direction. Furthermore, for the first time, the signature of intermittent presence of western intermediate water (WIW) is also highlighted in the northwestern part of the study area (12.235° E, 37.705° N). The excellent area coverage allowed to highlight the high horizontal and vertical inter-annual variability affecting the study area and also to recognize the permanent character of the main mesoscale phenomena present in the surface water layer. Moreover, strong temperature-salinity correlations in the intermediate layer, for specific time intervals, seem to be linked to the reversal of surface circulation in the central Ionian Sea. The analysis of CTD data in deeper water layer indicates the presence of a large volume of tEMDW in the Strait of Sicily during the summers of 2006 and 2009.

The survival of early stages of small pelagic fish species (e.g. Engraulis encrasicolus ) is highly dependent on environmental conditions in both spawning and nursery areas. Knowing the relationship between the mortality rates of the early stages and the environment may help to study and model recruitment fluctuations. During the summer of 2006, two consecutive oceanographic cruises were carried out in the Central Mediterranean sea (CMED) in two different areas: the western Libyan waters and the Sicilian–Maltese waters. For the first time a nearly synoptic comparison between the two border areas of the CMED is performed. In spite of a higher overall egg density in the Sicilian–Maltese waters, there was a higher density of anchovy larvae in Libyan waters. The comparison between the oceanographic datasets singled out different circulation patterns and different characteristics of water masses, which helped to explain the differences in density of the spawning products in the two areas. A Lagrangian transport model was used to evaluate the effects of major oceanographic features on offshore egg and larval transport. The results of the model simulations and the nutritional conditions, as indicated by lipid, carbohydrate and protein contents, support the hypothesis that the western Libyan waters may represent a more favourable nursery ground compared to the Sicilian–Maltese waters in terms of environmental conditions and food availability.

The goal of ecosystem-based marine spatial management is to maintain marine ecosystems in a healthy, productive and resilient condition; hence, they can sustainably provide the needed goods and services for human welfare. However, the increasing pressures upon the marine realm threaten marine ecosystems, especially seabed biotopes, and thus a well-planned approach of managing use of marine space is essential to achieve sustainability. The relative value of seabed biotopes, evaluated on the basis of goods and services, is an important starting point for the spatial management of marine areas. Herein, 56 types of European seabed biotopes and their related goods, services, sensitivity issues, and conservation status were compiled, the latter referring to management and protection tools which currently apply for these biotopes at European or international level. Fishing activities, especially by benthic trawls, and marine pollution are the main threats to European seabed biotopes. Increased seawater turbidity, dredged sediment disposal, coastal constructions, biological invasions, mining, extraction of raw materials, shipping-related activities, tourism, hydrocarbon exploration, and even some practices of scientific research, also exert substantial pressure. Although some first steps have been taken to protect the European sea beds through international agreements and European and national legislation, a finer scale of classification and assessment of marine biotopes is considered crucial in shaping sound priorities and management guidelines towards the effective conservation and sustainability of European marine resources.