Aquifers, springs and other groundwater‐dependent ecosystems are threatened by urban land use, which causes water quality deterioration through nutrient loading, sewage infiltration, groundwater extraction and, along coasts, seawater intrusion. The presence of certain microbes in groundwater can indicate that an aquifer is anthropogenically contaminated. Interpretations made from observations of indicator microbes in groundwater are limited because the relationship between the presumably allochthonous indicator microbes and relevant autochthonous microbial communities has not been characterized. This study addressed whether autochthonous aquifer biofilms can influence the presence of presumed microbial indicators in groundwater, and simultaneously used microbial indicators to trace sources of urban contamination at a karst spring of conservation concern. These questions were approached using a 17‐month time series analysis of attached biofilm and adjacent unattached bacteria in the submerged karst aquifer conduit associated with this spring. Environmental 16S rRNA gene sequencing was performed to characterize these communities, and community structure data were contextualized with groundwater geochemical and hydrogeological measurements. Linear regression models were developed to explain the relative abundance patterns of indicator microbes and other unattached microbes at this site. The results of this study suggest that dominant aquifer biofilms do not influence the presence of unattached microbial taxa that are presumed to be indicators of groundwater contamination, and generated new information about the origin of coliform bacteria at the study site. These results build confidence in the use of microbial indicators in groundwater‐dependent ecosystem conservation strategies and inform future management plans for urban aquifers and springs worldwide.

Quaternary Research is an international journal devoted to the advancement of the interdisciplinary understanding of the Quaternary Period.We aim to publish articles of broad interest with relevance to more than one discipline, and that constitute a signifi cant new contribution to Quaternary science.

The eastern oyster Crassostrea virginica is an important ecosystem engineer which promotes biodiversity, yet some key physiological traits, such as the salinity tolerance of larvae in mesohaline regions, are not well understood. The objective of this study was to determine the salinity tolerances of early-stage C. virginica larvae of broodstock from the mesohaline Choptank River, Chesapeake Bay (USA), and to compare results with previous studies conducted with broodstock from the polyhaline Long Island Sound. Three experiments were conducted with broodstock and water from the Choptank River. After spawning, larvae were reared at salinities ranging from 3 to 26 for similar to 48 h post-fertilization. Salinity had a significant effect on larval survival in all experiments. While mean survival differed across experiments, the highest survival occurred between salinities of 7 and 16 in all experiments. The range of salinities which promoted high survival in this study was shifted lower by at least 7 salinity units compared to the range of salinities which promoted high survival of C. virginica larvae from the polyhaline Long Island Sound as reported in the literature. These results show that early-stage C. virginica larvae can survive at lower salinities than previously reported, and support the idea that the salinity of gametogenesis and the genetic background of broodstock influence the survival of larvae. In addition, this work provides the first quantitative estimates of absolute (instead of relative) survival of early-stage C. virginica larvae across salinities, which could be used to improve numerical models that support oyster management.

Geosphere-biosphere interactions are ubiquitous features of the Earth surface, yet the development of interactions between newly exposed lithologic surfaces and colonizing plants during primary succession after glaciation are lacking temporal detail. To assess the nature, rate, and magnitude of vegetation influence on parent material and sediment delivery, we analyzed ecosystem and geochemical proxies from lacustrine sediment cores at a grassland site and a forested site in the northern United States. Over time, terrigenous inputs declined at both sites, with increasing amounts of organic inputs toward present. The similarities between sites were striking given that the grassland sequence began in the Early Holocene, and the forested sequence began after the last glacial maximum. Multiple mechanisms of chemical weathering, hydrologic transport, and changes in source material potentially contribute to this pattern. Although there were strong links between vegetation composition and nitrogen cycling at each site, it appears that changes in forest type, or from oak woodland to grassland, did not exert a large influence on elemental (K, Ti, Si, Ca, Fe, Mn, and S) abundance in the sedimentary sequences. Rather, other factors in the catchment-lake system determined the temporal sequence of elemental abundance.

Sulphur Springs Cave is an extensive phreatic cavity that produces a large, historic spring in the middle of metropolitan Tampa, Florida, USA. The city of Tampa extracts groundwater from the spring to supplement municipal water supply and to support low-salinity habitat in the estuarine Hillsborough River. Extraction at this site has occurred for many decades, but has intensified since the early 2000s, rapidly increasing the salinity of the spring and cave water. The purpose of this study was to address the potential sources and mechanisms of saltwater intrusion at this site using historical and current hydrochemical data published in the literature and online by government agencies. We also explored the cave to identify point-sources of intrusion, and collected water and biological samples from inside the cave to identify potential ecosystem impacts of increasing cave salinity. From 1946 to present, Sulphur Springs water shifted from being fresh (specific conductance < 500 mu S cm(-1)) and of calcium-sulfate type to being brackish (specific conductance similar to 5000 mu S cm(-1) and higher) and of sodium-chloride type. We found numerous vents in the cave that issue saline, thermal, sulfidic water and host distinct microbial mat communities. These vents are likely connected to bedrock fractures that provide preferential flow-paths along which confined, deep-sourced saline water enters the freshwater portion of the aquifer, probably originating from the coastal mixing zone. Salinity increased at the spring during dry-season pumping activity and after wet-season recharge events, which likely increased artesian pressure in confined saline aquifer units. Salinization of Sulphur Springs may disrupt the cave microbe and stygobite communities and eventually make the spring unsuitable to maintain low-salinity habitat in the Hillsborough River.

Karst estuaries are unique systems governed by freshwater inputs that flow directly to the sea through karst conduits and/or matrices. Because they are found at the interface between terrestrial and marine environments, they can act as sentinels to climate change and as indicators of aquifer health. The physical and geochemical gradients formed in karst estuaries are a direct result of the interactions between inland hydrological conditions and sea level. To examine the influence these gradients have on microbial communities in the water column and sediment of a karst estuary, we studied the spring-fed Double Keyhole Karst Estuary in west central Florida for a 2-year period. Four sites were monitored within this system starting at the Double Keyhole Spring Conduit extending 2 km west through the estuary toward the Gulf of Mexico. Water column and sediment samples were collected quarterly at all sites from September 2011 through September 2013. Archaeal, bacterial, and microbial eukaryote communities were analyzed using quantitative PCR and length-heterogeneity PCR. The biological communities were analyzed in the context of hydrological, physical, and geochemical parameters in order to determine which factor(s) governed the observed changes of microbial abundance and richness. The major finding of this study was that microbial community change in this karst estuary was primarily driven by the volume of aquifer discharge and associated physical gradients, and less by the geochemical fluctuations within the system.