Protonated mixed pyrene–water clusters, (Py) m (H 2 O) n H + , where m = [1–3] and n = [1–10], are generated using a cryogenic molecular cluster source. Collision induced dissociation is employed to explore the proton localisation in these systems.
We report threshold collision induced dissociation experiments on protonated water clusters thermalized at low temperature for sizes n = 19-23. Fragmentation cross sections are recorded as a function of the collision energy and analyzed with a statistical model. This model allows us to account for dissociation cascades and provides values for the dissociation energies of each cluster. These values, averaging around 0.47 eV, are in good agreement with theoretical predictions at various levels of theory. Furthermore, the dissociation energies show a trend for the n = 21 magic and n = 22 anti-magic numbers relative to their neighbours, which is also in agreement with theory. These results provide further evidence to resolve the disagreement between previously published experimental values. A careful quantitative treatment of cascade dissociation in this model introduces interdependence between the dissociation energies of neighboring sizes, which reduces the number of free fitting parameters and improves both reliability and uncertainties on absolute dissociation energies deduced from experiments.
. PIRENEA and PIRENEA 2 are experimental setups dedicated to the study of fundamental molecular processes involving species of astrochemical interest. The coupling of a VUV source to PIRENEA has allowed us to study the fragmentation pathways and stability of polycyclic aromatic hydrocarbons (PAHs) containing aliphatic bonds under conditions relevant for astrophysical photodissociation regions. PIRENEA 2 will open the possibility to extend these studies to larger systems such as PAH clusters, and more generally to study gas-nanograin-photon interactions.
We report measurements of the attachment rates of water molecules onto mass-selected cationic pyrene clusters for size from n = 4 to 13 pyrene units and for different collision energies. Comparison of the attachment rates with the collision rates measured in collision-induced dissociation experiments provides access to the values of the sticking coefficient. The strong dependence of the attachment rates on size and collision energy is rationalized through a model in which we use a Langevin-type collision rate and adjust on experimental data the statistical dissociation rate of the water molecule from the cluster after attachment. This allows us to extrapolate our results to the conditions of isolation and long time scales encountered in astrophysical environments.
Collision-induced dissociation experiments of hydrated molecular species can provide a wealth of important information. However, they often need a theoretical support to extract chemical information. In the present article, in order to provide a detailed description of recent experimental measurements [Braud et al., J. Chem. Phys., 2019, 150, 014303], collision simulations between low-energy protonated uracil water clusters (H2O)1-7,11,12UH+ and an Ar atom were performed using a quantum mechanics/molecular mechanics formalism based on the self-consistent-charge density-functional based tight-binding method. The theoretical proportion of formed neutral vs. protonated uracil containing clusters, total fragmentation cross sections as well as the mass spectra of charged fragments are consistent with the experimental data which highlights the accuracy of the present simulations. They allow to probe which fragments are formed on the short time scale and rationalize the location of the excess proton on these fragments. We demonstrate that this latter property is highly influenced by the nature of the aggregate undergoing the collision. Analyses of the time evolution of the fragments populations and of their relative abundances demonstrate that, up to 7 water molecules, a direct dissociation mechanism occurs after collision whereas for 11 and 12 water molecules a statistical mechanism is more likely to participate. Although scarce in the literature, the present simulations appear as a useful tool to complement collision-induced dissociation experiments of hydrated molecular species.
We report a theoretical investigation of the collision-induced dissociation of pyrene dimer cation, as recently investigated in the experimental work by Zamith et al. (J. Chem. Phys. 153, 054311 (2020)). Molecular dynamics simulations using potential energies and forces computed at the self-consistent charge density functional-based tight binding level were conducted for different collision energies between 2.5 and 30 eV. It appears that most of the dissociation occurs on a short timescale (less than 3 ps). The dynamical simulations allow to visualize the dissociation processes. At low collision energies, the dissociation cross section increases with collision energies, whereas it remains almost constant for collision energies greater than 10-15 eV. The analysis of the kinetic energy partition is used to get insights into the collision/dissociation processes at the atomic scale. The simulated time-of-flight mass spectra of parent and dissociation products are obtained from the combination of molecular dynamics simulations and phase space theory to address the short and long timescales dissociation, respectively. The agreement between the simulated and measured mass spectra suggests that the main processes are captured by this approach.
We report threshold collision induced dissociation experiments on cationic pyrene clusters, for sizes n = 2-6. Fragmentation cross sections are recorded as a function of the collision energy and analyzed with a statistical model. This model can account for the dissociation cascades and provides values for the dissociation energies. These values, of the order of 0.7 eV-1 eV, are in excellent agreement with those previously derived from thermal evaporation. They confirm the charge resonance stability enhancement predicted by theoretical calculations. In addition, remarkable agreement is obtained with theoretical predictions for the two smaller sizes n = 2 and 3. For the larger sizes, the agreement remains good, although the theoretical values obtained for the most stable structures are systematically higher by 0.2 eV. This offset could be attributed to approximations in the calculations. Still, there is an indication in the results of an incomplete description of the role of isomerization and/or direct dissociation upon collisions. Finally, by-product clusters containing dehydrogenated species are found to dissociate at energies comparable to the non-dehydrogenated ones, which shows no evidence for covalent bonds within the clusters.
Infrared spectra are computed for neutral and cationic clusters of Polycyclic Aromatic Hydrocarbon clusters, namely (C16H10)n=1,4(0/+) , using the Density Functional based Tight Binding scheme combined with a Configuration Interaction scheme (DFTB-CI) in the double harmonic approximation. Cross-comparison is carried out with DFT and simple DFTB. Similarly to the monomer cation, the IR spectra of cluster cations are characterized by a depletion of the intensity of the CH stretch modes around 3000 cm-1, with a weak revival for n = 3 and 4. The in-plane CCC modes in the region 1400-2000 cm-1 are enhanced while the CH bending modes in the range 700-1000 cm-1 are significantly weakened with respect to the monomer cation, in particular for n = 2. Finally, soft modes corresponding to diedral fluctuations of the monomers within the central stack of the ion structure, possibly mixed with monomer folding, are also observed in the region 70-120 cm-1.
This work presents a study of the thermal evaporation and stability of pyrene (C16H10)n clusters. Thermal evaporation rates of positively charged mass-selected clusters are measured for sizes in the range n = 3-40 pyrene units. The experimental setup consists of a gas aggregation source, a thermalization chamber, and a time of flight mass spectrometer. A microcanonical Phase Space Theory (PST) simulation is used to determine the dissociation energies of pyrene clusters by fitting the experimental breakdown curves. Calculations using the Density Functional based Tight Binding combined with a Configuration Interaction (CI-DFTB) model and a hierarchical optimization scheme are also performed in the range n = 2-7 to determine the harmonic frequencies and a theoretical estimation of the dissociation energies. The frequencies are used in the calculations of the density of states needed in the PST simulations, assuming an extrapolation scheme for clusters larger than 7 units. Using the PST model with a minimal set of adjustable parameters, we obtain good fits of the experimental breakdown curves over the full studied size range. The approximations inherent to the PST simulation and the influence of the used parameters are carefully estimated. The derived dissociation energies show significant variations over the studied size range. Compared with neutral clusters, significantly higher values of the dissociation energies are obtained for the smaller sizes and attributed to charge resonance in line with CI-DFTB calculations.
A collision-induced dissociation study of hydrated protonated uracil (H2O)n=1-15UH+ clusters is reported. The mass-selected clusters collide with water molecules and rare gases at a controlled center of mass collision energy. From these measurements, absolute fragmentation cross sections and branching ratios are extracted as a function of the uracil hydration. For small clusters, up to n = 4, we observe that only neutral water molecules are evaporated upon collisions, whereas, for larger clusters, neutral uracil is also evaporated: this transition in the nature of the evaporation products is interpreted considering the lowest-energy isomers of each species that are obtained from a combination of density-functional based tight-binding and MP2 calculations. The simulations show that in (H2O)1-4UH+ the proton is located on the uracil molecule or on a water molecule strongly bound to uracil whereas, in larger clusters, the proton is bound to water molecules far from uracil. This correlation between the structure of the low-energy isomers and the experimental fragmentation channel suggests that dissociation may occur in a very short time after collisions so that energy has not enough time to be redistributed among all degrees of freedom and the ground-state geometry of the parent cluster partly determines the nature of the favored fragmentation channels. Of course, thermal dissociations originating from long lived, thus thermalized, collision complexes cannot be ruled out but they are not expected to play the major role since the experimental results can be satisfactorily accounted for by assuming that the fragmentation processes are mainly impulsive.
Protonated water clusters have received a lot of attention as they offer tools to bridge the gap between molecular and bulk scales of water. However, their properties are still not fully understood and deserve further theoretical and experimental investigations. In this work, we simulate the caloric curves of protonated water clusters (H2O)(n)H+ (n = 20-23). These curves, which have recently been measured experimentally, are characteristic of the phase changes occurring in the aggregates with respect to temperature. The present simulations are achieved by combining parallel-tempering molecular dynamics and the self-consistent-charge density-functional based tight-binding approach and are focused on a restricted size range around (H2O)(21)H+ which presents singular properties. The shape of the experimental caloric curves and their size dependence are satisfactorily reproduced by the simulations which allows us to further provide a description of the phase transition in terms of structural modifications, dynamics of water molecules and proton mobility. Similar to the experiments, we observe that (H2O)(21)H+ exhibits a sharper phase transition than the neighbouring size clusters, which can be traced back to both structural and dynamic peculiarities.
We present the design of a versatile gas aggregation source that allows producing molecular beams of charged clusters containing a controlled amount of chosen impurities. Several examples of clusters production using this source characterized by time of flight mass spectrometry are presented here. We demonstrate the source ability to produce homogeneous clusters, such as pure protonated water and alcohol clusters, as well as inhomogeneous ones such as water clusters containing a few units of uracil, glycine, sulfuric acid, or pyrene.
We measured the absolute attachment cross-sections of water and alcohol molecules colliding with protonated water and alcohol clusters. Dynamical arguments are used to explain the lower than geometrical cross-sections at small sizes.
An experimental nanocalorimetric study of mass selected protonated (H2O)nH(+) and deprotonated (H2O)n-1OH(-) water clusters is reported in the size range n = 20-118. Water cluster's heat capacities exhibit a change of slope at size dependent temperatures varying from 90 to 140 K, which is ascribed to phase or structural transition. For both anionic and cationic species, these transition temperatures strongly vary at small sizes, with higher amplitude for protonated than for deprotonated clusters, and change more smoothly above roughly n ≈ 35. There is a correlation between bonding energies and transition temperatures, which is split in two components for protonated clusters while only one component is observed for deprotonated clusters. These features are tentatively interpreted in terms of structural properties of water clusters.
Received 4 September 2014DOI:https://doi.org/10.1103/PhysRevLett.113.149901© 2014 American Physical Society
Angle-resolved photoelectron spectra, resulting from the strong-field ionization of atoms or molecules, carry a rich amount of information on ionization pathways, electron dynamics, and the target structure. We have investigated angle-resolved photoelectron spectra arising from the nonresonant ionization of xenon Rydberg atoms in the multiphoton regime, using intense midinfrared radiation from a free-electron laser. The experimental data reveal a rich oscillatory structure in the low-order above-threshold ionization region. By performing quantum-mechanical and semiclassical calculations, the observed oscillations could be well reproduced and explained by both a multiphoton absorption picture as by a model invoking electron wave-packet interferences. Furthermore, we demonstrate that the shape and orientation of the initial Rydberg state leaves its own fingerprint on the final angular distribution. DOI: 10.1103/PhysRevA.87.033413
Heat capacities of mass selected deprotonated water clusters (H(2)O)(n-1)OH(-) have been measured in the size range n = 48-118, as a function of temperature. We have found that they undergo a melting-like transition in the range 110-130 K. The transition temperature is size dependent with a strong correlation with the dissociation energy around the shell closure at n = 55.