A new trigonal (3T) polytype of chloritoid, Fe2+Al2(SiO4)O(OH)(2), a rock-forming schist mineral, has been found in samples from the chloritoid type locality, Kosoy Brod deposit, MiddleUrals, Russia. Single-crystal X-ray diffraction indicated that the mineral crystallizes in the space group P32, a = 5.4890(2), c = 26.7612(14) & Aring;, V = 698.27(6) & Aring;(3). The structure was solved and refined to R-1 = 0.0564 (wR(2) = 0.1545) for 2534 unique reflections with I > 2 sigma(I). After known triclinic (1A) and monoclinic (2M(2))modifications, chloritoid-3T is the third chloritoid polytype. The crystal structures of all three polytypes are based upon the same types of octahedral and tetrahedral layers. The main difference between the polytypes is in the stacking of dioctahedral layers L2 and trioctahedral layers L1 interconnected with a tetrahedral net. The new polytype (3T) can be detected by its powder X-ray diffraction pattern. The complexity analysis indicates that the crystal structure of chloritoid-3T is the most complex among known polytypes. The discovery of a new chloritoid polytype is essential for the potential development of chloritoid-based geothermometers and has implications for the general conception of polytypism.
On the basis of published data and results of original investigations, 21 mineral species were identified of the amphibole supergroup minerals in the Lovozero alkaline massif (Kola Peninsula, Russia). Among them, 11 species belong to sodium amphiboles, four species are sodium–calcium amphiboles, and six species are calcium amphiboles. Sodium amphiboles are widespread in alkaline rocks of all complexes in the Lovozero massif (Layered, Eudialyte, and Poikilitic), in pegmatites and hydrothermal veins, as well as in roof xenoliths of volcanoclastic rocks of the trap formation. Magnesio-arfvedsonite is the most widespread sodium amphibole, being often the rock-forming and the main melanocratic mineral. Sodium–calcium amphiboles are found in the Poikilitic complex and in xenoliths of volcanoclastic rocks. Calcium amphiboles occur only in xenoliths of volcanoclastic rocks altered metamorphically or metasomatically in varying degree. The morphology, chemical composition, isomorphic substitutions, and paragenesis of amphiboles in the Lovozero massif are considered, as well as their belonging to different varieties and complexes of rocks and their abundance. A critical review of previously published data on amphiboles from rocks of the Lovozero massif is given according to the present nomenclature of the amphibole supergroup minerals.
The paper focuses on a transition from studying synthetic analogs of rare titanosilicate minerals (lintisite, ivanyukite, and zorite) in the powdery state to investigating their new granulated forms. Five different methods for granulating titanosilicate samples are tested: fluidized bed and spray dry granulation, spray bed granulation, screw rotor granulation, and manual pressing of paste through a stainless-steel sieve with a 1 mm mesh size. The results of studying sorption of trace amounts of 137Cs and 90Sr radionuclides from model solutions of various compositions onto inorganic sorbents in powdered and granulated forms are presented.
This study examines a natural consortium of halophilic archaea, comprising xylan-degrading Halorhabdus sp. SVX81, consortium cohabitant Haloferax volcanii SVX82 (formerly H. lucentense SVX82), and its DPANN ectosymbiont Ca. Nanohalococcus occultus SVXNc. Transcriptomics and targeted metabolomics demonstrated that the tripartite consortium outperformed individual and the Halorhabdus sp. SVX81 with H. volcanii SVX82 bipartite cultures in xylan degradation, exhibiting a division of labor: the DPANN symbiont processed glycolysis products, while other members performed xylan depolymerization and biosynthesis of essential compounds. Electron microscopy and cryo-electron tomography revealed the formation of heterocellular biofilms interlinked by DPANN cells. The findings demonstrated that DPANN symbionts can interact directly with other members of microbial communities, which are not their primary hosts, influencing their gene expression. However, DPANN proliferation requires their primary host presence. The study highlights the collective contribution of consortium members to xylan degradation and their potential for biotechnological applications in the management of hypersaline environments.
Bortolanite, a rare mineral of the rinkite group, seidozerite supergroup occurs in two different associations in the Lovozero massif in the Kola Peninsula, Russia: (1) together with ferri-katophorite and phlogopite, it forms porous or mesh aggregates (symplectitic accretions) with euhedral contours in the contact zone of a volcano-sedimentary xenolith and eudialyte lujavrite at Kuamdespakhk Mt and (2) in intergrowths with titanite and fluorcaphite in the poikilitic feldspathoid syenites at Sengischorr Mt. In both cases, bortolanite was found in association with rosenbuschite that is close to it in chemical composition, but unlike bortolanite, it contains no REEs. The mineral is triclinic, space group P$\bar{1}$, a = 9.5807(5), b = 5.6943(4), c = 7.2813(4) & Aring;, alpha = 89.891(5)degrees, beta = 100.959(4)degrees, gamma = 101.241(5)degrees, V = 382.25(4) & Aring;3 and Z = 1.The Lovozero bortolanite differs from the Brazilian holotype sample from de Caldas alkaline massif, Minas Gerais, due to the presence of (OH)-groups in its composition, which is indicated by Raman data. A combination of single-crystal X-ray diffraction data and electron microprobe data provides the following crystal-chemical formula: (Ca1.97Ce0.01Nd0.01Th0.01)Sigma 2(Ca1.39Zr0.61)Sigma 2(Na0.72Ca0.28)Sigma 1(Na1.36Ca0.56Mn0.03Zn0.01)Sigma 1.96(Ti0.78Zr0.08Nb0.05Mg0.05Fe0.04)Sigma 1Si4O14((OH)0.92O0.87F0.21)Sigma 2F2.
The influence of microalgae on the formation of associated prokaryotic assemblages in halophilic microbial communities is currently underestimated. The aim of this study was to characterize shifts in prokaryotic assemblages of halophilic microalgae upon their transition to laboratory cultivation. Monoalgal cultures belonging to the classes Chlorodendrophyceae, Bacillariophyceae, Trebouxiophyceae, and Chlorophyceae were isolated from habitats with intermediate salinity, about 100 g/L, nearby Elton Lake (Russia). Significant changes were revealed in the structure of algae-associated prokaryotic assemblages, indicating that microalgae supported sufficiently diverse and even communities of prokaryotes. Despite some similarities in their prokaryotic assemblages, taxon-specific complexes of dominant genera were identified for each microalga species. These complexes were most different among Alphaproteobacteria, likely due to their close association with microalgae. Other taxon-specific bacteria included members of phylum Verrucomicrobiota (Coraliomargarita in assemblages of Navicula sp.) and class Gammaproteobacteria (Salinispirillum in microbiomes of A. gracilis). After numerous washings of algal cells, only alphaproteobacteria Marivibrio remained in all assemblages of T. indica, likely due to a firm attachment to the microalgae cells. Our results may be useful for further efforts to develop technologies applied for industrial cultivation of halophilic microalgae and for developing approaches to obtain new prokaryotes with a microalgae-associated lifestyle.
The complete genome sequence of a new strain of the haloarchaeaon Halorubrum distributum ICIS4 was revealed and analyzed. The strain was isolated from a culture of a carotenogenic microalga Dunaliella salina maintained in laboratory conditions for a long period of time. The genome (3.32 Mb) contained 3236 protein-coding genes. Of the 2817 groups of homologous genes, 11 were unique to this strain. In the genome, the genes were revealed, which were responsible for utilization of glycerol and starch and for synthesis of vitamins, pigments, and siderophores. These genes may be involved in formation and maintenance of the association with microalgae. A region similar to the HRPV9 virus and another circular contig similar to a phage of the haloarchaeon Haloquadratum walsbyi were revealed in the genome assembly.
The artificial solar saltworks fields of Hon Khoi are important industrial and biodiversity resources in southern Vietnam. Most hypersaline environments in this area are characterized by saturated salinity, nearly neutral pH, intense ultraviolet radiation, elevated temperatures and fast desiccation processes. However, the extremely halophilic prokaryotic communities associated with these stressful environments remain uninvestigated. To fill this gap, a metabarcoding approach was conducted to characterize these communities by comparing them with solar salterns in northern Vietnam as well as with the Italian salterns of Motya and Trapani. Sequencing analyses revealed that the multiple reuses of crystallization ponds apparently create significant perturbations and structural instability in prokaryotic consortia. However, some interesting features were noticed when we examined the diversity of ultra-small prokaryotes belonging to Patescibacteria and DPANN Archaea. Surprisingly, we found at least five deeply branched clades, two from Patescibacteria and three from DPANN Archaea, which seem to be quite specific to the Hon Khoi saltworks field ecosystem and can be considered as a part of biogeographical connotation. Further studies are needed to characterize these uncultivated taxa, to isolate and cultivate them, which will allow us to elucidate their ecological role in these hypersaline habitats and to explore their biotechnological and biomedical potential.
Flexible crystal() structures, which exhibit() single-crystal()-to-single-crystal() (SCSC) transformations(), are attracting attention() in many applied aspects: magnetic() switches, catalysis, ferroelectrics and sorption. Acid treatment() for titanosilicate material() AM-4 and natural() compounds with the same structures led to SCSC transformation() by loss() Na+, Li+ and Zn2+ cations with large structural() changes (20% of the unit()-cell() volume()). The conservation() of crystallinity through complex() transformation() is possible due() to the formation() of a strong hydrogen bonding() system(). The mechanism() of transformation() has been characterized using single-crystal() X-ray() diffraction analysis(), powder() diffraction, Rietvield refinement, Raman spectroscopy and electron microscopy. The low migration() energy() of cations in the considered materials() is confirmed using bond()-valence and density() functional() theory() calculations, and the ion conductivity of the AM-4 family's materials() has been experimentally verified.
Lake Kislo-Sladkoe is a stratified water body partly isolated from the White Sea. Perennial meromixis in the lake irregularly alternates with mixing events. Taking into account that the protists of Arctic coastal stratified water bodies are understudied, we evaluated for the first time the vertical structure, species richness, and diversity of protists assigned to different taxonomic groups in Lake Kislo-Sladkoe using light, luminescent, and scanning electron microscopy. To test the research hypothesis that a mixing event affects the vertical stratification and species composition of protists in a stratified lake, we compared the protist communities of Lake Kislo-Sladkoe in two extremely different states: strong meromixis vs. full vertical mixing. A total of 97 morphologically distinct phototrophic, heterotrophic, and mixotrophic protists were revealed with the most diverse supertaxa SAR (59), Obazoa (9), and Excavates (14). The hidden diversity of protists (43 species) was a bit less than the active diversity (54 species). A taxonomic list and micrographs of cells for the observed protists are provided. The majority of species revealed are cosmopolitan or widespread in the northern sea waters. The vertical patterns of protist communities were absolutely different in 2018 and 2021. In July 2018, clearly distinct protist communities inhabited different layers of the lake. Bloom of cryptophyte Rhodomonas cf. baltica was detected in chemocline, whereas the maximum density of its grazers was observed in adjacent layers, mainly dinoflagellates Gymnodinium sp. and Scrippsiella trochoidea, as well as a ciliate Prorodon sp. In 2021 due to the recent mixing of lake and seawater, there were no distinct communities in the water column except the superficial 0–1 m layer of fresh water.
Редкометалльные пегматитовые месторождений Охмыльк и Васин
Climate change, desertification, salinisation of soils and the changing hydrology of the Earth are creating or modifying microbial habitats at all scales including the oceans, saline groundwaters and brine lakes. In environments that are saline or hypersaline, the biodegradation of recalcitrant plant and animal polysaccharides can be inhibited by salt-induced microbial stress and/or by limitation of the metabolic capabilities of halophilic microbes. We recently demonstrated that the chitinolytic haloarchaeon Halomicrobium can serve as the host for an ectosymbiont, nanohaloarchaeon 'Candidatus Nanohalobium constans'. Here, we consider whether nanohaloarchaea can benefit from the haloarchaea-mediated degradation of xylan, a major hemicellulose component of wood. Using samples of natural evaporitic brines and anthropogenic solar salterns, we describe genome-inferred trophic relations in two extremely halophilic xylan-degrading three-member consortia. We succeeded in genome assembly and closure for all members of both xylan-degrading cultures and elucidated the respective food chains within these consortia. We provide evidence that ectosymbiontic nanohaloarchaea is an active ecophysiological component of extremely halophilic xylan-degrading communities (although by proxy) in hypersaline environments. In each consortium, nanohaloarchaea occur as ectosymbionts of Haloferax, which in turn act as scavenger of oligosaccharides produced by xylan-hydrolysing Halorhabdus. We further obtained and characterised the nanohaloarchaea-host associations using microscopy, multi-omics and cultivation approaches. The current study also doubled culturable nanohaloarchaeal symbionts and demonstrated that these enigmatic nano-sized archaea can be readily isolated in binary co-cultures using an appropriate enrichment strategy. We discuss the implications of xylan degradation by halophiles in biotechnology and for the United Nation's Sustainable Development Goals.
Extremely halophilic representatives of the phylum Candidatus Nanohaloarchaeota (members of the DPANN superphyla) are obligately associated with extremely halophilic archaea of the phylum Halobacteriota (according to the GTDB taxonomy). Using culture-independent molecular techniques, their presence in various hypersaline ecosystems around the world has been confirmed over the past decade. However, the vast majority of nanohaloarchaea remain uncultivated, and thus their metabolic capabilities and ecophysiology are currently poorly understood. Using the (meta)genomic, transcriptomic, and DNA methylome platforms, the metabolism and functional prediction of the ecophysiology of two novel extremely halophilic symbiotic nanohaloarchaea (Ca. Nanohalococcus occultus and Ca. Nanohalovita haloferacivicina) stably cultivated in the laboratory as members of a xylose-degrading binary culture with a haloarchaeal host, Haloferax lucentense, was determined. Like all known DPANN superphylum nanoorganisms, these new sugar-fermenting nanohaloarchaea lack many fundamental biosynthetic repertoires, making them exclusively dependent on their respective host for survival. In addition, given the cultivability of the new nanohaloarchaea, we managed to discover many unique features in these new organisms that have never been observed in nano-sized archaea both within the phylum Ca. Nanohaloarchaeota and the entire superphylum DPANN. This includes the analysis of the expression of organism-specific non-coding regulatory (nc)RNAs (with an elucidation of their 2D-secondary structures) as well as profiling of DNA methylation. While some ncRNA molecules have been predicted with high confidence as RNAs of an archaeal signal recognition particle involved in delaying protein translation, others resemble the structure of ribosome-associated ncRNAs, although none belong to any known family. Moreover, the new nanohaloarchaea have very complex cellular defense mechanisms. In addition to the defense mechanism provided by the type II restriction-modification system, consisting of Dcm-like DNA methyltransferase and Mrr restriction endonuclease, Ca. Nanohalococcus encodes an active type I-D CRISPR/Cas system, containing 77 spacers divided into two loci. Despite their diminutive genomes and as part of their host interaction mechanism, the genomes of new nanohaloarchaea do encode giant surface proteins, and one of them (9,409 amino acids long) is the largest protein of any sequenced nanohaloarchaea and the largest protein ever discovered in cultivated archaea.
In this paper we present a Commission on New Minerals, Nomenclature and Classification of the International Mineralogical Association (IMA-CNMNC)-accepted scheme for the classification and nomenclature of the triphylite group of minerals. The general formula of those minerals is M1M2TO(4), where M1 and M2 refer to cations in an octahedral coordination: M1 = rectangle, Na, Li; M2 = Mn2+, Fe2+, Mg, Fe3+, Mn3+ and T to tetrahedrally coordinated P5+ cations. The group contains the Li-bearing phosphates triphylite [LiFe2+ (PO4)] and lithiophilite [LiMn2+ (PO4)] and their oxidation products heterosite [Fe3+ (PO4)] and purpurite [Mn3+ (PO4)], as well as the Na-bearing phosphates natrophilite [NaMn2+ (PO4)] and karenwebberite [NaFe2+ (PO4)]. The Li-Mg-bearing phosphate simferite has been redefined as LiMg(PO4). Ferrisicklerite and sicklerite correspond to intermediate phases in the triphylite-heterosite and lithiophilite-purpurite solid solutions; consequently, according to the CNMNC dominant-constituent rule, they are discredited. A new mineral oxidation sequence is defined, which considers the different oxidation capacity of iron and manganese, and therefore replaces the traditional Quensel-Mason sequence. The formula calculation procedure for Li-bearing species, based on electron microprobe analyses and single-crystal X-ray diffraction data, is also described.
On the base of published data and results of original researches, there were revealed 21 mineral species of the amphibole supergroup minerals in the Lovozero alkaline massif (Kola peninsula, Russia). Among them, 11 species belong to sodium amphiboles, 4 species are sodium-calcium amphiboles and 6 species – calcium ones. Sodium amphiboles are widely present in alkaline rocks of all complexes in the Lovozero massif – layered, eudialyte, and poikilitic complexes, in pegmatites and hydrothermal veins, as well as in roof xenoliths of volcanoclastic rocks of the trap formation. Magnesio-arfvedsonite is the most widespread sodium amphibole, often it is the rock-forming and the main melanocratic mineral. Sodium-calcium amphiboles are found in the poikilitic complex and in xenoliths of volcanoclastic rocks. Calcium amphiboles occur only in xenoliths of volcanoclastic rocks altered metamorphically or metasomatically in different degree. There are analyzed morphology, chemical composition, isomorphic replacements and paragenetic associations of amphiboles in the Lovozero massif, their belonging to different types and complexes of rocks, and their abundance. The critical review of previously published data on amphiboles in the Lovozero massif is given according to the present nomenclature of the amphibole supergroup minerals.
The 360-370-Ma-old Lovozero peralkaline massif (NW Russia) is a layered nepheline syenitic–foidolitic pluton. In the rocks of the massif, late-stage (auto)metasomatic alterations of rock-forming minerals are quite intense. We studied the products of the alteration of nepheline and sodalite via microtextural, microprobe, and spectroscopic methods. We found that these minerals are extensively replaced by the association between natrolite + nordstrandite ± böhmite ± paranatrolite in accordance with the following reactions: 3Nph + 4H2O → Ntr + Nsd + NaOH; 6Nph + 9H2O → Ntr + Pntr + 2Nsd + 2NaOH; Sdl + 4H2O → Ntr + Nsd + NaOH + NaCl, where Nph is nepheline, Ntr is natrolite, Nsd is nordstrandite, Pntr is paranatrolite, and Sdl is sodalite. As a result, about one-third of the sodium from nepheline (and sodalite) is set free and passes into the fluid. This leads to an increase in the Na/Cl ratio and, hence, the pH of the fluid. An increase in pH stabilizes hyperagpaitic minerals (e.g., ussingite, villiaumite, thermonatrite, and trona), which can crystallize in close proximity to pseudomorphized nepheline and sodalite. Thus, the alteration of feldspathoids increases the pH of late-magmatic fluids, which in turn can lead to the crystallization of hyperagpaitic minerals.
Nepheline, ideally Na3K(Al4Si4O16) is a key mineral of silica-undersaturated igneous rocks. Under subsolidus conditions, nepheline is intensively replaced by numerous secondary minerals, of which various zeolites (mainly natrolite, analcime, gonnardite), as well as cancrinite, muscovite and Al-O-H phases (gibbsite, böhmite, nordstrandite) are the most common. In the rocks of the Lovozero alkaline massif (Kola Peninsula, NW Russia), nepheline is extensively replaced by the association natrolite + nordstrandite ± böhmite ± paranatrolite. To reproduce the conditions for the formation of such a mineral association, a series of experiments were carried out on the dissolution of nepheline in deionized water, 0.5 mol/L NaCl, 0.5 mol/L NaOH, and 0.1 mol/L HCl at 230 °C for 1/5/15 days. When nepheline is partially dissolved, phases and mixtures of phases precipitate on the surface of its grains, and these phases were diagnosed using X-ray powder diffraction and Raman spectroscopy. Observations in natural samples and experimental studies have shown that the nepheline alteration in the rocks of the Lovozero massif with the formation of natrolite and Al-O-H phases occurred under the influence of a high to medium salinity solution at a pH of near 6.
The production of electrolytic nickel includes the stage of leaching of captured firing nickel matte dust. The solutions formed during this process contain considerable amounts of Pb, which is difficult to extraction due to its low concentration upon the high-salt background. The sorption of lead from model solutions with various compositions by synthetic and natural titanosilicate sorbents (synthetic ivanyukite-Na-T (SIV), ivanyukite-Na-T, and AM-4) have been investigated. The maximal sorption capacity of Pb is up to 400 mg/g and was demonstrated by synthetic ivanyukite In solutions with the high content of Cl− (20 g/L), extraction was observed only with a high amount of Na (150 g/L). Molecular mechanisms and kinetics of lead incorporation into ivanyukite were studied by the combination of single-crystal and powder X-ray diffraction, microprobe analysis, and Raman spectroscopy. Incorporation of lead into natural ivanyukite-Na-T with the R3m symmetry by the substitution 2Na+ + 2O2− ↔ Pb2+ + □ + 2OH− leds to its transformation into the cubic P−43m Pb-exchanged form with the empirical formulae Pb1.26[Ti4O2.52(OH)1.48(SiO4)3]·3.32(H2O).
The results of isotopic and geochronological study of zircon from rare-metal pegmatites of the Okhmylk deposit are presented. There were no reliable data on the age of lepidolite-spodumene-pollucite pegmatites of this and the other deposits spatially located within the Archean Kolmozero-Voron’ya greenstone belt. The earlier estimates of the pegmatite age indicate a broad time range from 2.7 to 1.8 Ga. Zircon in the studied pegmatites is characterized by inner heterogeneity, where core and rim zones are distinguished. Minor changes are observed in the core zones, they have a spotted structure and contain numerous uranium oxide inclusions. According to X-ray diffraction analysis, zircon crystallinity is preserved completely in these areas. Complete recrystallization with modification of the original U-Pb isotopic system occurred in the zircon rims. New U-Pb (zircon) isotopic and geochronological data of 2607±9 Ma reflect the time of crystallization of pegmatite veins in the Okhmylk deposit. Isotopic data with ages of ~1.7-1.6 Ga indicate later hydrothermal alteration. The obtained results testify to the Neo-Archean age of the formation of the Okhmylk deposit 2.65-2.60 Ga, reflecting the global age of pegmatite formation and associated the world's largest rare-metal pegmatite deposits.