Outbreaks of acute oak decline (AOD) have been documented in England from 2006. Both species of native oaks (Quercus robur and Quercus petraea) are affected. To complement isolation efforts for identification of putative causative biotic agents and increase our understanding of bacteria associated with oak tissue, five sites in England were chosen for this study. Samples of outer bark, inner bark, sapwood and heartwood were taken from healthy oak and trees with symptoms at varying stages of the syndrome. Furthermore, larval galleries attributed to infestation with Agrilus biguttatus were included. After DNA extraction and amplification of the V3–V5 fragment of the bacterial 16S rRNA genes by pyrosequencing, the dataset was analyzed to identify patterns in bacterial communities in oak tissue samples with and without AOD symptoms at each site. The composition of bacterial communities differed greatly according to the site from which the samples were obtained. Within each site, the composition of the bacteria associated with symptomatic tissue varied between advanced stages of the syndrome and healthy tissue. Key players in healthy and symptomatic tissue were identified and included members of the Gammaproteobacteria related to Pseudomonas sp. or Brenneria goodwinii and members of the Firmicutes.

induced damage, electrophysiology and a ray tracing model. Edward Gaten, Steve Moss and Magnus Johnson 1 Biology Department, University of Leicester, University Rd, Leicester, LE1 7RH 2 Department of Biology, University of Hull, Hull, HU6 7RX 3 Centre for Environmental and Marine Sciences, University of Hull, Scarborough, YO11 3AZ Abstract The large reniform eyes of the reptant, tube-dwelling decapod Nephrops norvegicus are described in some detail. Optically these reflecting superposition compound eyes are a little unusual in that they are laterally flattened, a feature that may enhance their sensitivity in that region, albeit at the expense of resolution. Electrophysiological and anatomical investigations suggest that the eyes are able to tune to appropriate spectral and temporal sensitivities in the long and short term through movement of proximal pigments and possibly rhabdom adaptation. Although exposure to ambient surface light intensities is shown to cause damage to the retinal layer, especially in deeper living animals, there is no evidence yet that demonstrates an impact of eye damage on their survival. It is suggested that experimentation on marine decapods, with sensitive eyes, requires that particular attention is paid to their visual sensitivity.

The large reniform eyes of the reptant, tube-dwelling decapod Nephrops norvegicus are described in detail. Optically these reflecting superposition compound eyes are a little unusual in that they are laterally flattened, a feature that may enhance their sensitivity in that region, albeit at the expense of resolution. Electrophysiological and anatomical investigations suggest that the eyes are tuned to appropriate spectral and temporal sensitivities in the long and short term through movement of proximal pigments and possibly rhabdom adaptation. Although exposure to ambient surface light intensities is shown to cause damage to the retinal layer, especially in deeper living animals, there is no evidence yet that demonstrates an impact of eye damage on their survival. It is suggested that experimentation on marine decapods, with sensitive eyes, requires that particular attention is paid to their light environment.

The large reniform eyes of the reptant, tube-dwelling decapod Nephrops norvegicus are described in detail. Optically these reflecting superposition compound eyes are a little unusual in that they are laterally flattened, a feature that may enhance their sensitivity in that region, albeit at the expense of resolution. Electrophysiological and anatomical investigations suggest that the eyes are tuned to appropriate spectral and temporal sensitivities in the long and short term through movement of proximal pigments and possibly rhabdom adaptation. Although exposure to ambient surface light intensities is shown to cause damage to the retinal layer, especially in deeper living animals, there is no evidence yet that demonstrates an impact of eye damage on their survival. It is suggested that experimentation on marine decapods, with sensitive eyes, requires that particular attention is paid to their light environment.

We have developed a bioinformatics pipeline for the comparative evolutionary analysis of Ensembl genomes and have used it to analyze the introns of the five available teleost fish genomes. We show our pipeline to be a powerful tool for revealing variation between genomes that may otherwise be overlooked with simple summary statistics. We identify that the zebrafish, Danio rerio, has an unusual distribution of intron sizes, with a greater number of larger introns in general and a notable peak in the frequency of introns of approximately 500 to 2,000 bp compared with the monotonically decreasing frequency distributions of the other fish. We determine that 47% of D. rerio introns are composed of repetitive sequences, although the remainder, over 331 Mb, is not. Because repetitive elements may be the origin of the majority of all noncoding DNA, it is likely that the remaining D. rerio intronic sequence has an ancient repetitive origin and has since accumulated so many mutations that it can no longer be recognized as such. To study such an ancient expansion of repeats in the Danio, lineage will require further comparative analysis of fish genomes incorporating a broader distribution of teleost lineages.