Local conditions for the direct summands of a persistence module to belong to a certain class of indecomposables have been proposed in the 2-parameter setting, notably for the class of indecomposables called block modules, which plays a prominent role in levelset persistence. Here we generalize the local condition for decomposability into block modules to the n-parameter setting, and prove a corresponding structure theorem. Our result holds in the generality of pointwise finite-dimensional modules over finite products of arbitrary totally ordered sets. Our proof extends the one by Botnan and Crawley-Boevey from 2 to n parameters, which requires some crucial adaptations at places where their proof is fundamentally tied to the 2-parameter setting.

End-to-end topological learning using 1-parameter persistence is well-known. We show that the framework can be enhanced using 2-parameter persistence by adopting a recently introduced 2-parameter persistence based vectorization technique called GRIL. We establish a theoretical foundation of differentiating GRIL producing D-GRIL. We show that D-GRIL can be used to learn a bifiltration function on standard benchmark graph datasets. Further, we exhibit that this framework can be applied in the context of bio-activity prediction in drug discovery.

Self-supervised learning (SSL) has emerged as a powerful paradigm for learning meaningful representations from unlabeled data. However, the standard protocol for evaluating these representations, linear probing, is computationally expensive, sensitive to hyperparameters, and provides limited insight into the geometric structure of the representation space. In this work, motivated by connections between neural network generalization and intrinsic dimension (ID) we propose IdEst, a method for estimating the ID of SSL representations via the Minimum Spanning Tree dimension estimator (dim_MST). Across diverse datasets, architectures, and SSL pretraining objectives, we show that IdEst strongly correlates with downstream linear probe performances. Furthermore, we demonstrate that IdEst enables efficient hyperparameter selection, significantly reducing the computational cost compared to supervised alternatives. Our results highlight intrinsic dimensionality as a principled geometric proxy for assessing SSL representations, complementing standard supervised probing protocols.

Classical results of Hausmann and Latschev show that Vietoris-Rips complexes can recover the homotopy type of a manifold, even from finite metric spaces that are nearby in Gromov-Hausdorff distance. We prove persistent homotopical versions of these theorems for metric spaces equipped with filtration functions. The central object of study is the so-called persistent homotopy type of the function-Rips complex, a filtered simplicial complex that combines a fixed Rips scale with the filtration data on the underlying space. Using techniques from CAT(κ)-geometry and persistent simplicial homotopy theory, we generalize Latschev's and Hausmann's theorems to the setting of spaces with filtration functions and homotopical interleavings. A fundamental ingredient is a new homotopical stability theorem. The fixed-scale function-Rips construction is known not to be globally stable with respect to function Gromov-Hausdorff distance and homotopical interleaving distance. Here, we show that it is nevertheless stable for appropriate choices of the Rips parameter at such pairs (M,f) for which M is a complete metric space of curvature bounded above, and f is a Lipschitz continuous multivariate function.

Given an unknown ℝ^n -valued function f on a metric space X, can we approximate the persistent homology of f from a finite sampling of X with known pairwise distances and function values? This question has been answered in the case n=1 , assuming f is Lipschitz continuous and X is a sufficiently regular geodesic metric space, and using filtered geometric complexes with fixed scale parameter for the approximation. In this paper we answer the question for arbitrary n, under similar assumptions and using function-geometric multifiltrations. Our analysis offers a different view on these multifiltrations by focusing on their approximation properties rather than on their stability properties. We also leverage the multiparameter setting to provide insight into the influence of the scale parameter, whose choice is central to this type of approach. From a practical standpoint, we show that our approximation results are robust to input noise, and that function-geometric multifiltrations have good statistical convergence properties. We also provide an algorithm to compute our estimators, and we use its implementation to conduct extensive experiments, on both synthetic and real biological data, in order to validate our theoretical results.

Self-supervised learning (SSL) has emerged as a powerful paradigm for learning representations without labeled data, often by enforcing invariance to input transformations such as rotations or blurring. Recent studies have highlighted two pivotal properties for effective representations: (i) avoiding dimensional collapse-where the learned features occupy only a low-dimensional subspace, and (ii) enhancing uniformity of the induced distribution. In this work, we introduce T-REGS, a simple regularization framework for SSL based on the length of the Minimum Spanning Tree (MST) over the learned representation. We provide theoretical analysis demonstrating that T-REGS simultaneously mitigates dimensional collapse and promotes distribution uniformity on arbitrary compact Riemannian manifolds. Several experiments on synthetic data and on classical SSL benchmarks validate the effectiveness of our approach at enhancing representation quality.

Given a finite dimensional, bigraded module over the polynomial ring in two variables, we define its two-parameter count, a natural number, and its end-curves, a set of plane curves. These are two-dimensional analogues of the notions of bar-count and endpoints of singly-graded modules over the polynomial ring in one variable, from persistence theory. We show that our count is the unique one satisfying certain natural conditions; as a consequence, several inclusion-exclusion formulas in two-parameter persistence yield the same positive number, which equals our count, and which in turn equals the number of end-curves, giving geometric meaning to this count. We show that the end-curves determine the classical Betti tables by showing that they interpolate between generators, relations, and syzygies. Using the band representations of a certain string algebra, we show that the set of end-curves admits a canonical partition, where each part forms a closed curve on the plane; we call this the boundary of the module. As an invariant, the boundary is neither weaker nor stronger than the rank invariant, but, in contrast to the rank invariant, it is a complete invariant on the set of spread-decomposable representations. Our results connect several lines of work in multiparameter persistence, and their extension to modules over the real-exponent polynomial ring in two variables relates to two-dimensional Morse theory.

Dans ce texte nous utilisons l'homologie pour introduire formellement la théorie de la persistance, notamment dans ses aspects algébriques. Nous présentons ses principaux objets d'étude, appelés modules de persistance, et nous étudions leurs propriétés de décomposition. Ces décompositions forment la base des descripteurs utilisés en analyse topologique de données, appelés codes-barres ou diagrammes de persistance.

The γ-linear projected barcode was recently introduced as an alternative to the well-known fibered barcode for multiparameter persistence, in which restrictions of the modules to lines are replaced by pushforwards of the modules along linear forms in the polar of some fixed cone γ. So far, the computation of the γ-linear projected barcode has only been studied in the functional setting, in which persistence modules come from the persistent cohomology of ℝ^n-valued functions. Here we develop a method that works in the algebraic setting directly, for any multiparameter persistence module over ℝ^n that is given via a finite free resolution. Our approach is similar to that of RIVET: first, it pre-processes the resolution to build an arrangement in the dual of ℝ^n and a barcode template in each face of the arrangement; second, given any query linear form u in the polar of γ, it locates u within the arrangement to produce the corresponding barcode efficiently. While our theoretical complexity bounds are similar to the ones of RIVET, our arrangement turns out to be simpler thanks to the linear structure of the space of linear forms. Our theoretical analysis combines sheaf-theoretic and module-theoretic techniques, showing that multiparameter persistence modules can be converted into a special type of complexes of sheaves on vector spaces called conic-complexes, whose derived pushforwards by linear forms have predictable barcodes.

A significant part of modern topological data analysis is concerned with the design and study of algebraic invariants of poset representations-often referred to as persistence modules. One such invariant is the minimal rank decomposition, which encodes the ranks of all the structure morphisms of the persistence module by a single ordered pair of rectangledecomposable modules, interpreted as a signed barcode. This signed barcode generalizes the concept of persistence barcode from one-parameter persistence to any number of parameters, raising the question of its bottleneck stability. We show in this paper that the minimal rank decomposition is not stable under the natural notion of signed bottleneck matching between signed barcodes. We remedy this by turning our focus to the rank exact decomposition, a related signed barcode induced by the minimal projective resolution of the module relative to the so-called rank exact structure, which we prove to be bottleneck stable under signed matchings. As part of our proof, we obtain two intermediate results of independent interest: we compute the global dimension of the rank exact structure on the category of finitely presentable multi-parameter persistence modules, and we prove a bottleneck stability result for hook-decomposable modules. We also give a bound for the size of the rank exact decomposition that is polynomial in the size of the usual minimal projective resolution, we prove a universality result for the dissimilarity function induced by the notion of signed matching, and we compute, in the two-parameter case, the global dimension of a different exact structure related to the upsets of the indexing poset. This set of results combines concepts from topological data analysis and from the representation theory of posets, and we believe is relevant to both areas.

Topological integral transforms have found many applications in shape analysis, from prediction of clinical outcomes in brain cancer to analysis of barley seeds. Using Euler characteristic as a measure, these objects record rich geometric information on weighted polytopal complexes. While some implementations exist, they only enable discretized representations of the transforms, and they do not handle weighted complexes (such as for instance images). Moreover, recent hybrid transforms lack an implementation. In this paper, we introduce Eucalc, a novel implementation of three topological integral transforms – the Euler characteristic transform, the Radon transform, and hybrid transforms – for weighted cubical complexes. Leveraging piecewise linear Morse theory and Euler calculus, the algorithms significantly reduce computational complexity by focusing on critical points. Our software provides exact representations of transforms, handles both binary and grayscale images, and supports multi-core processing. It is publicly available as a C++ library with a Python wrapper. We present mathematical foundations, implementation details, and experimental evaluations, demonstrating Eucalc's efficiency.

Merge trees are a type of graph-based topological summary that tracks the evolution of connected components in the sublevel sets of scalar functions. They enjoy widespread applications in data analysis and scientific visualization. In this paper, we consider the problem of comparing two merge trees via the notion of interleaving distance in the metric space setting. We investigate various theoretical properties of such a metric. In particular, we show that the interleaving distance is intrinsic on the space of labeled merge trees and provide an algorithm to construct metric 1-centers for collections of labeled merge trees. We further prove that the intrinsic property of the interleaving distance also holds for the space of unlabeled merge trees. Our results are a first step toward performing statistics on graph-based topological summaries.

Real-valued functions on geometric data -- such as node attributes on a graph -- can be optimized using descriptors from persistent homology, allowing the user to incorporate topological terms in the loss function. When optimizing a single real-valued function (the one-parameter setting), there is a canonical choice of descriptor for persistent homology: the barcode. The operation mapping a real-valued function to its barcode is differentiable almost everywhere, and the convergence of gradient descent for losses using barcodes is relatively well understood. When optimizing a vector-valued function (the multiparameter setting), there is no unique choice of descriptor for multiparameter persistent homology, and many distinct descriptors have been proposed. This calls for the development of a general framework for differentiability and optimization that applies to a wide range of multiparameter homological descriptors. In this article, we develop such a framework and show that it encompasses well-known descriptors of different flavors, such as signed barcodes and the multiparameter persistence landscape. We complement the theory with numerical experiments supporting the idea that optimizing multiparameter homological descriptors can lead to improved performances compared to optimizing one-parameter descriptors, even when using the simplest and most efficiently computable multiparameter descriptors.

In this paper, we introduce the signed barcode, a new visual representation of the global structure of the rank invariant of a multi-parameter persistence module or, more generally, of a poset representation. Like its unsigned counterpart in one-parameter persistence, the signed barcode decomposes the rank invariant as a $${\mathbb {Z}}$$ Z -linear combination of rank invariants of indicator modules supported on segments in the poset. We develop the theory behind these decompositions, both for the usual rank invariant and for its generalizations, showing under what conditions they exist and are unique. We also show that, like its unsigned counterpart, the signed barcode reflects in part the algebraic structure of the module: specifically, it derives from the terms in the minimal rank-exact resolution of the module, i.e., its minimal projective resolution relative to the class of short exact sequences on which the rank invariant is additive. To complete the picture, we show some experimental results that illustrate the contribution of the signed barcode in the exploration of multi-parameter persistence modules.

Persistence modules are representations of products of totally ordered sets in the category of vector spaces. They appear naturally in the representation theory of algebras, but in recent years they have also found applications in other areas of mathematics, including symplectic topology, complex analysis, and topological data analysis, where they arise from filtrations of topological spaces by the sublevel sets of real-valued functions. Two fundamental properties of persistence modules make them useful in such contexts: (1) the fact that they are stable under perturbations of the originating functions, and (2) the fact that they can be approximated, in the sense of relative homological algebra, by classes of indecomposable modules with an elementary structure. In this text we give an introduction to the theory of persistence modules, then we explain how the above properties can be leveraged to build a framework for differential calculus and optimization with convergence guarantees in persistence module categories.

Multimodality has recently gained attention in the medical domain, where imaging or video modalities may be integrated with biomedical signals or health records. Yet, two challenges remain: balancing the contributions of modalities, especially in cases with a limited amount of data available, and tackling missing modalities. To address both issues, in this paper, we introduce the AnchoreD multimodAl Physiological Transformer (ADAPT), a multimodal, scalable framework with two key components: (i) aligning all modalities in the space of the strongest, richest modality (called anchor) to learn a joint embedding space, and (ii) a Masked Multimodal Transformer, leveraging both inter- and intra-modality correlations while handling missing modalities. We focus on detecting physiological changes in two real-life scenarios: stress in individuals induced by specific triggers and fighter pilots' loss of consciousness induced by $g$-forces. We validate the generalizability of ADAPT through extensive experiments on two datasets for these tasks, where we set the new state of the art while demonstrating its robustness across various modality scenarios and its high potential for real-life applications.

Persistent homology (PH) provides topological descriptors for geometric data, such as weighted graphs, which are interpretable, stable to perturbations, and invariant under, e.g., relabeling. Most applications of PH focus on the one-parameter case -- where the descriptors summarize the changes in topology of data as it is filtered by a single quantity of interest -- and there is now a wide array of methods enabling the use of one-parameter PH descriptors in data science, which rely on the stable vectorization of these descriptors as elements of a Hilbert space. Although the multiparameter PH (MPH) of data that is filtered by several quantities of interest encodes much richer information than its one-parameter counterpart, the scarceness of stability results for MPH descriptors has so far limited the available options for the stable vectorization of MPH. In this paper, we aim to bring together the best of both worlds by showing how the interpretation of signed barcodes -- a recent family of MPH descriptors -- as signed measures leads to natural extensions of vectorization strategies from one parameter to multiple parameters. The resulting feature vectors are easy to define and to compute, and provably stable. While, as a proof of concept, we focus on simple choices of signed barcodes and vectorizations, we already see notable performance improvements when comparing our feature vectors to state-of-the-art topology-based methods on various types of data.

We introduce a novel gradient descent algorithm refining the well-known Gradient Sampling algorithm on the class of stratifiably smooth objective functions, which are defined as locally Lipschitz functions that are smooth on some regular pieces—called the strata—of the ambient Euclidean space. On this class of functions, our algorithm achieves a sub-linear convergence rate. We then apply our method to objective functions based on the (extended) persistent homology map computed over lower-star filters, which is a central tool of Topological Data Analysis. For this, we propose an efficient exploration of the corresponding stratification by using the Cayley graph of the permutation group. Finally, we provide benchmarks and novel topological optimization problems that demonstrate the utility and applicability of our framework.

We investigate the existence of sufficient local conditions under which poset representations decompose as direct sums of indecomposables from a given class. In our work, the indexing poset is the product of two totally ordered sets, corresponding to the setting of 2-parameter persistence in topological data analysis. Our indecomposables of interest belong to the so-called interval modules, which by definition are indicator representations of intervals in the poset. While the whole class of interval modules does not admit such a local characterization, we show that the subclass of rectangle modules does admit one and that it is, in some precise sense, the largest subclass to do so.