Water salinity and scarcity constitute major limitations to crop production in arid and semi-arid regions. Introduction of nutritious and stress-tolerant underutilized crops is a promising approach for dietary enrichment, cropping system diversification, remediation of marginal and degraded lands, and building climate resilience. The primary objectives of this study were to investigate the effect of water salinity and managed water-deficit stress on grain and fodder yield, identify multi-trait ideotypes, and validate the stability and genetic gain in finger millet ideotypes over a 2-year period. A total of 80 finger millet accessions were evaluated under fresh water (0 dS/m) and two saline irrigation water (6 and 10 dS/m) in Dubai during the 2020/2021 cropping season. Validation of a selected elite subset was conducted under a combination of optimum, salinity, and drought-stress regimes (0 dS/m, 6 dS/m, 10 dS/m, and 50% irrigation) during the 2021/2022 cropping season. Initial analysis showed a grain yield (GYLD) reduction of 87% under 10 dS/m saline irrigation water compared with the control, and the genotype-by-treatment (G × T) interaction revealed highly significant effects for GYLD. Using multi-trait genotype–ideotype distance index (MGIDI), 20 elite accessions were identified, demonstrating a remarkable increase in mean GYLD under high saline irrigation water, corresponding to a genetic gain of 167% over the reference population mean. Validation trials confirmed the success of the selection by showing a non-significant G × T for GYLD and dry fodder yield (DFYLD) across the four validation treatments, alongside a significant increase in heritability (H2) for GYLD from 0.60 to 0.78. Comparative analysis revealed that managed water-deficit stress was the most limiting factor for GYLD in the elite subset, causing an average loss of 42.7% compared to 20.4% under high saline water irrigation. However, DFYLD displayed exceptional stability across both saline water and water-deficit stress types. The comparative analysis presented in Venn diagrams ultimately identified a core group of stable, broadly adapted accessions, including IE 4028 and IE 4570, which are recommended as high- impact parental lines for combined stress tolerance. These findings establish a reliable selection framework for enhancing the climate-resilience of underutilized crops in marginal environments.

[This corrects the article DOI: 10.3389/fpls.2026.1754820.].

Scarce water resources, high temperatures, limited rainfall, elevated soil salinity, and poor soil quality (98% sand) challenge crop production in the desert regions of the Middle East. Proso millet’s resilience under these stresses presents a potential solution for enhancing food security in arid environments. This field study evaluated 24 proso millet genotypes under three environments (100% freshwater, 50% freshwater, and 10 dS/m salinity) in the UAE during normal and summer seasons, aiming to identify genotypes resilient to water, heat, and salinity stresses and to assess genotype-by-environment (G × E) interactions and key traits associated with grain yield. ANOVA indicated significant G × E interactions. Genotypes G9 and G24 displayed high yield and stability across environments during the normal season. In the summer, genotypes G7 and G10 exhibited resilience with high yields under high-temperature stress alone, while combined stresses led to yield reductions across all genotypes, with greater susceptibility under cumulative stress. GGE biplot analysis identified G9 as ideal in the normal season, while G15 and G23 demonstrated stability under combined stresses in the summer season. High chaffy grain yield (CGY) observed under summer stress conditions suggests a shift in resource allocation away from productive grain formation. The reproductive phase was highly vulnerable to heat stress, with 88% of this period experiencing daytime temperatures exceeding 40 °C, with a peak reaching up to 49 °C. These extreme conditions, coinciding with the crop’s critical growth stages, triggered a significant increase in chaffy grain production, substantially reducing overall grain yield. Despite these challenges, genotypes G7, G10, and G12 exhibited notable resilience, maintaining yields above 0.75 t ha−1. Correlation analysis suggested that selecting for increased plant height, forage yield, and 1000-grain weight (TGW) could enhance grain yield under the normal and summer conditions. This study highlights the potential of proso millet genotypes as climate-resilient options for arid regions, providing a basis for developing stress-tolerant varieties and promoting sustainable agriculture in desert climates.

Subtropical arid regions face challenges such as high temperatures, poor soil fertility, and saline soils and water. Quinoa (Chenopodium quinoa Willd.) is well-suited for these areas, particularly in the Middle East and North Africa, where it is cultivated with saline irrigation. This study evaluated the seed yield and quality of eleven quinoa genotypes under two salinity levels (1 and 15 dSm-1) in sandy soils at the International Center for Biosaline Agriculture (Dubai, UAE). Key traits measured included seed yield (SY), biomass, plant height (PH), days to flowering (DF) and maturity (DM), thousand seed weight (TSW), and carbon (delta 13C) and nitrogen (delta 15N) isotope composition, alongside nitrogen, mineral, and essential amino acid content. Salinity reduced PH and biomass by 20 %, TSW by 6 %, and SY by 30 %, although the ICBA-Q5 variety showed positive effects on SY and biomass under saline conditions. Salinity increased delta 13C and delta 15N and had a minor impact on minerals, with moderate increases in zinc and sulfur. Amino acids showed slight reductions in isoleucine, leucine, and threonine. Genotypic effects were more significant than salinity, with Ames-13757 performing best for SY and biomass under both control and saline conditions, and NSL-106399 displaying the highest amino acid content under salinity. delta 13C and DF negatively correlated with SY, while delta 15N was linked negatively to some minerals and amino acids. The study found a low trade-off between seed yield and quality under salinity. Quinoa is highly adaptable to saline irrigation in the UAE, and genotype selection is key for optimizing yield and quality.

Food security is a pressing global concern, particularly highlighted by the United Nations Sustainable Development Goal 2 (SDG 2), which focuses on enhancing the productivity and incomes of smallholder farmers. In the Middle East and North Africa (MENA) region, horticultural crops are increasingly threatened by pests and diseases, exacerbated by climate change. Local farmers often lack the necessary expertise to effectively manage these issues, resulting in significant reductions in both yield and quality of their crops. This study seeks to develop an accessible mobile crop diagnosis application. By utilizing machine learning and deep learning technologies, the app is designed to help MENA farmers quickly and accurately identify and treat crop disorders. We used Open Data Kit (ODK) to gather a large dataset of crop images required to train deep learning models. These models, built on open-source deep learning architectures, were designed to classify 21 different leaf disorders, including diseases, pests, and nutritional deficiencies. The system was implemented in both a web app and an Android mobile app. Our deep learning models demonstrated an overall accuracy of 94 % in diagnosing plant disorders. The app, Doctor Nabat, includes a decision support system that offers treatment options in the three primary languages spoken in the MENA region. Doctor Nabat is an effective and scalable tool for enhancing crop management in the MENA region, promoting food security by minimizing crop losses through improved pest and disease diagnosis and treatment strategies.

Quinoa (Chenopodium quinoa Willd.), an Andean crop, is a facultative halophyte food crop recognized globally for its high nutritional value and plasticity to adapt to harsh conditions. We conducted a genome-wide association study on a diverse set of quinoa germplasm accessions. These accessions were evaluated for the following agronomic and biochemical traits: days to 50% flowering (DTF), plant height (PH), panicle length (PL), stem diameter (SD), seed yield (SY), grain diameter (GD), and thousand-grain weight (TGW). These accessions underwent genotyping-by-sequencing using the DNBSeq-G400R platform. Among all evaluated traits, TGW represented maximum broad-sense heritability. Our study revealed average SNP density of ≈ 3.11 SNPs/10 kb for the whole genome, with the lowest and highest on chromosomes Cq1B and Cq9A, respectively. Principal component analysis clustered the quinoa population in three main clusters, one clearly representing lowland Chilean accessions, whereas the other two groups corresponded to germplasm from the highlands of Peru and Bolivia. In our germplasm set, we estimated linkage disequilibrium decay to be ≈ 118.5 kb. Marker-trait analyses revealed major and consistent effect associations for DTF on chromosomes 3A, 4B, 5B, 6A, 7A, 7B and 8B, with phenotypic variance explained (PVE) as high as 19.15%. Nine associations across eight chromosomes were also found for saponin content with 20% PVE by qSPN5A.1. More QTLs were identified for PL and TGW on multiple chromosomal locations. We identified putative candidate genes in the genomic regions associated with DTF and saponin content. The consistent and major-effect genomic associations can be used in fast-tracking quinoa breeding for wider adaptation across marginal environments.

Wild plants supply food and shelter to several organisms; they also act as important sources of many nutrients and pharmaceutical agents for mankind. These plants are widely used in traditional medicinal systems and folk medicines. The present study analyzed the nutritional and proximate composition of various compounds in selected wild plants available in the UAE, viz., Chenopodium murale L., Dipterygium glaucum Decne., Heliotropium digynum Asch. ex C.Chr., Heliotropium kotschyi Gürke., Salsola imbricata Forssk., Tribulus pentandrus Forssk., Zygophyllum qatarense Hadidi. The predominant amino acids detected in the plants were glycine, threonine, histidine, cysteine, proline, serine, and tyrosine; the highest quantities were observed in H. digynum and T. pentandrus. The major fatty acids present were long-chain saturated fatty acids; however, lauric acid was only present in S. imbricata. The presence of essential fatty acids such as oleic acid, α-Linoleic acid, and linolenic acid was observed in H. digynum, S. imbricata, and H. kotschyi. These plants also exhibited higher content of nutrients such as carbohydrates, proteins, fats, ash, and fiber. The predominant vitamins in the plants were vitamin B complex and vitamin C. C. murale had higher vitamin A, whereas vitamin B complex was seen in T. pentandrus and D. glaucum. The phosphorus and zinc content were high in T. pentandrus; the nitrogen, calcium, and potassium contents were high in H. digynum, and D. glaucum. Overall, these plants, especially H. digynum and T. pentandrus contain high amounts of nutritionally active compounds and important antioxidants including trace elements and vitamins. The results from the experiment provide an understanding of the nutritional composition of these desert plant species and can be better utilized as important agents for pharmacological drug discovery, food, and sustainable livestock production in the desert ecosystem.

The diversity of quinoa morphological traits and seed metabolic composition Iman Tabatabaei, Saleh Alseekh, Mohammad Shahid, Ewa Leniak, Mateusz Wagner, Henda Mahmoudi, Sumitha Thushar, Alisdair R. Fernie, Kevin M. Murphy, Sandra M. Schmöckel, Mark Tester, Bernd Mueller-Roeber, Aleksandra Skirycz, Salma Balazadeh

Orphan crops are indigenous and invariably grown by small and marginal farmers under subsistence farming systems. These crops, which are common and widely accepted by local farmers, are highly rich in nutritional profile, good for medicinal purposes, and well adapted to suboptimal growing conditions. However, these crops have suffered neglect and abandonment from the scientific community because of very low or no investments in research and genetic improvement. A plausible reason for this is that these crops are not traded internationally at a rate comparable to that of the major food crops such as wheat, rice, and maize. Furthermore, marginal environments have poor soils and are characterized by extreme weather conditions such as heat, erratic rainfall, water deficit, and soil and water salinity, among others. With more frequent extreme climatic events and continued land degradation, orphan crops are beginning to receive renewed attention as alternative crops for dietary diversification in marginal environments and, by extension, across the globe. Increased awareness of good health is also a major contributor to the revived attention accorded to orphan crops. Thus, the introduction, evaluation, and adaptation of outstanding varieties of orphan crops for dietary diversification will contribute not only to sustained food production but also to improved nutrition in marginal environments. In this review article, the concept of orphan crops vis-à-vis marginality and food and nutritional security is defined for a few orphan crops. We also examined recent advances in research involving orphan crops and the potential of these crops for dietary diversification within the context of harsh marginal environments. Recent advances in genomics coupled with molecular breeding will play a pivotal role in improving the genetic potential of orphan crops and help in developing sustainable food systems. We concluded by presenting a potential roadmap to future research engagement and a policy framework with recommendations aimed at facilitating and enhancing the adoption and sustainable production of orphan crops under agriculturally marginal conditions.

Desert regions occupy 33% of the Earth’s land surface. Despite the harsh climatic conditions, different types of plants and microorganisms have adapted to survive and proliferate in these arid extreme conditions and developed associations. Prosopis cineraria is able to flourish in spite of the harsh climatic conditions of high salinity in the desert soils of the United Arab Emirates (U.A.E.), the present study therefore aimed at isolating, screening and understanding the diversity of microflora associated with the rhizosphere region of Prosopis cineraria grown at 15 ds/m salinity. Eleven morphologically distinct purified isolates from rhizosphere soil were screened for IAA production, phosphate solubilization, antibacterial activity and nitrogen-fixing activity. Four of the isolates exhibited nitrogen-fixing activity, two antibacterial activity and five phosphate-solubilizing activity. The plant-growth-promoting bacterial (PGPB) isolates can be used as appropriate bioinoculants which can then in turn be used for cultivation of other plants in the region.

The euhalophyte species Salicornia europaea is cultivated for oilseed and as a fodder crop in various parts of the world. In saline coastal environments it possesses great potential for the subsistence of the most disadvantaged farmers. We investigated the effect of salinity levels in irrigation water on the germination capacity, shoot biomass and seed productivity as well as diverse quality traits (nitrogen content in shoots and seeds and fatty acids, in seeds) and physiological traits (stable carbon and nitrogen isotopes and ion content) of two accessions collected in the United Arab Emirates (UAE). The three salinity levels tested were irrigation with fresh water (0.3 dS m-1), brackish water (25 dS m-1) and sea water (40 dS m-1). In addition, a hypersaline condition (80 dS m-1) was also tested for germination. The best germination rates were achieved with seeds exposed to fresh and brackish water, while imbibition with sea water decreased germination by half and hypersaline water inhibited it almost totally. However, the best irrigation regime in terms of biomass and seed yield involved brackish water. Moreover, rising salinity in the irrigation increased the stable isotope composition of carbon (delta 13C) and nitrogen (delta 15N), together with the Na+ and K+ of shoots and seeds, and the lipid levels of seeds, while the total nitrogen content and the profile of major fatty acids of seeds did not change. Differences between the two ecotypes existed for growth and seed yield with the best ecotype exhibiting lower delta 13C and higher K+ in both shoots and seeds, lower Na+ and higher delta 15N in shoots, and lower N in seeds, together with differences in major fatty acids. Physiological mechanisms behind the response to irrigation salinity and the ecotypic differences are discussed in terms of photosynthetic carbon and nitrogen metabolism.

Quinoa is considered to be a salt-tolerant crop and has the potential to be cultivated in marginal lands with salinity problems. The introduction of salinity-tolerant quinoa accessions to the salt-affected farmlands around the world could help to rebuild the economies of affected regions. It would also provide a nutritious food to local communities. To find the salinity-tolerance in different cultivars of quinoa, field experiments were conducted at low and high salinities, at the International Center for Biosaline Agriculture, Dubai, UAE. The yield trials were done in randomized complete block design experiments with 3 reps and 2 salinity treatments: low salinity (0.3 dS/m) and high salinity (15 dS/m). Eleven quinoa cultivars and one djulis variety were analyzed to detect their tolerance against high salinity. The agronomic and morphological characteristics measured were days to flowering, days to maturity, plant height, the number of primary branches per plant, the number of panicles per plant, main panicle length, plant dry weight per plot, grain yield per plot, and thousand seeds weight.

With the ever-increasing world population, an extra 1.5 billion mouths need to be fed by 2050 with continuously dwindling arable land. Hence, it is imperative that extra food come from the marginal lands that are expected to be unsuitable for growing major staple crops under the adverse climate change scenario. Crop diversity provides right alternatives for marginal environments to improve food, feed, and nutritional security. Well-adapted and climate-resilient crops will be the best fit for such a scenario to produce seed and biomass. The minor millets are known for their high nutritional profile and better resilience for several abiotic stresses that make them the suitable crops for arid and salt-affected soils and poor-quality waters. Finger millet (Eleucine coracana) and foxtail millet (Setaria italica), also considered as orphan crops, are highly tolerant grass crop species that grow well in marginal and degraded lands of Africa and Asia with better nutritional profile. Another category of grains, called pseudo-cereals, is considered as rich foods because of their protein quality and content, high mineral content, and healthy and balance food quality. Quinoa (Chenopodium quinoa), amaranth (Amaranthus sp.), and buckwheat (Fagopyrum esculentum) fall under this category. Nevertheless, both minor millets and pseudo-cereals are morphologically different, although similar for micronutrient bioavailability, and their grains are gluten-free. The cultivation of these millets can make dry lands productive and ensure future food as well as nutritional security. Although the natural nutrient profile of these crop plant species is remarkably good, little development has occurred in advances in molecular genetics and breeding efforts to improve the bioavailability of nutrients. Recent advances in NGS have enabled the genome and transcriptome sequencing of these millets and pseudo-cereals for the faster development of molecular markers and application in molecular breeding. Genomic information on finger millet (1,196 Mb with 85,243 genes); S. italica, a model small millet (well-annotated draft genome of 420 Mb with 38,801 protein-coding genes); amaranth (466 Mb genome and 23,059 protein-coding genes); buckwheat (genome size of 1.12 Gb with 35,816 annotated genes); and quinoa (genome size of 1.5 Gb containing 54,438 protein-coding genes) could pave the way for the genetic improvement of these grains. These genomic resources are an important first step toward genetic improvement of these crops. This review highlights the current advances and available resources on genomics to improve nutrient bioavailability in these five suitable crops for the sustained healthy livelihood.

Quinoa ( Chenopodium quinoa Willd.) is an herbaceous annual crop of the amaranth family (Amaranthaceae). It is increasingly cultivated for its nutritious grains, which are rich in protein and essential amino acids, lipids, and minerals. Quinoa exhibits a high tolerance towards various abiotic stresses including drought and salinity, which supports its agricultural cultivation under climate change conditions. The use of quinoa grains is compromised by anti-nutritional saponins, a terpenoid class of secondary metabolites deposited in the seed coat; their removal before consumption requires extensive washing, an economically and environmentally unfavorable process; or their accumulation can be reduced through breeding. In this study, we analyzed the seed metabolomes, including amino acids, fatty acids, and saponins, from 471 quinoa cultivars, including two related species, by liquid chromatography – mass spectrometry. Additionally, we determined a large number of agronomic traits including biomass, flowering time, and seed yield. The results revealed considerable diversity between genotypes and provide a knowledge base for future breeding or genome editing of quinoa.