基本信息
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职业迁徙
个人简介
My interests span the breadth of microbiome research. My work in this field can be divided in to “wet” and “dry” components that are each a result of my interdisciplinary training and drive to look at microbial research questions differently. My interdisciplinary training motivates me to investigate bacteria as members of communities. This community-based approach has yielded recent publications from my laboratory where, instead of trying to link individual bacteria with pathogenesis, we seek to understand how entire microbial communities and subsets of those communities could be used to classify people by their health status or risk of disease. When I started pursuing these questions as a postdoc, we didn’t have the necessary computational tools to find the answers. So we made them ourselves. Trained as a biological engineer, I acquired the skills needed to develop several prominent computer programs for analyzing the DNA sequence data generated from microbial ecology experiments. Together, my papers describing these tools have been cited thousands of times. The ability to bridge biology and computational sciences has allowed me to leave a positive impact on a diverse array of important research questions spanning from colon cancer and Clostridium difficile infections to the soil and deep sea.
研究兴趣
论文共 172 篇作者统计合作学者相似作者
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Awan Afiaz,Andrey A Ivanov,John Chamberlin,David Hanauer,Candace L Savonen,Mary J Goldman, Martin Morgan,Michael Reich, Alexander Getka, Aaron Holmes,Sarthak Pati, Dan Knight,Paul C Boutros, Spyridon Bakas,J Gregory Caporaso, Guilherme Del Fiol,Harry Hochheiser,Brian Haas,Patrick D Schloss, James A Eddy, Jake Albrecht, Andrey Fedorov,Levi Waldron, Ava M Hoffman, Richard L Bradshaw, Jeffrey T Leek,Carrie Wright
Bioinformatics (Oxford, England)no. 8 (2024)
JOURNAL OF GASTROINTESTINAL CANCERno. 1 (2024): 207-218
Awan Afiaz,Andrey A Ivanov, John Chamberlin,David Hanauer,Candace L Savonen,Mary J Goldman,Martin Morgan,Michael Reich,Alexander Getka, Aaron Holmes,Sarthak Pati, Dan Knight,Paul C Boutros,Spyridon Bakas,J Gregory Caporaso,Guilherme Del Fiol,Harry Hochheiser,Brian Haas,Patrick D Schloss,James A Eddy,Jake Albrecht,Andrey Fedorov,Levi Waldron,Ava M Hoffman,Richard L Bradshaw,Jeffrey T Leek,Carrie Wright
ArXiv (2023)
bioRxiv (Cold Spring Harbor Laboratory) (2023)
Microbiology spectrumno. 6 (2023)
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作者统计
#Papers: 171
#Citation: 49867
H-Index: 67
G-Index: 171
Sociability: 7
Diversity: 0
Activity: 1
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