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IncF plasmids are diverse mobile genetic elements found in bacteria from the Enterobacteriaceae family and often carry critical antibiotic and virulence gene cargo. The classification of IncF plasmids using the plasmid Multi-Locus Sequence Typing (pMLST) tool compares the sequences of IncF alleles against a database to create a plasmid sequence type (ST). Accurate identification of plasmid STs is epidemiologically useful because it enables an assessment of the crucial IncF plasmid lineages associated with pandemic and emerging enterobacterial sequence types, inferring important information about specific bacterial lineages. Our initial observations showed discrepancies in IncF allele variants reported by pMLST in a collection of 898 Escherichia coli ST131 genomes. To evaluate the limitations of the pMLST tool, we interrogated an in-house and publicly available repository of 70324 E. coli genomes of various STs and other Enterobacterales genomes (n=1247). All short-read genomes and representatives selected for long-read sequencing were used to assess allele variants and to compare the output with the real biological situation. When multiple allele variants occurred in a single bacterial genome, the python and web versions of the tool randomly selected one allele to report, leading to limited and inaccurate ST identification. Discrepancies were detected in 5804 of 72469 genomes (8.01%). Long read sequencing of 27 carefully selected genomes confirmed multiple IncF allele variants present on one plasmid, or two separate IncF plasmids present in a single bacterial cell. The pMLST tool was unable to accurately distinguish allele variants and their location on replicons using short-read nor long-read genome sequences.
Abstract Background Bentonites, as a clay mineral, serve in pig farms as adsorbents of toxic substances. They are mainly used to reduce the negative impact of mycotoxins to maintain the performance and health status of animals. The new genotypes of pigs are highly sensitive to a range of antinutrients, including mycotoxins. Currently, attention is focused on more effective adsorbents of mycotoxins with a higher adsorption capacity. Such materials are in great demand among feed manufacturers. However, there is a concern that these new materials may also adsorb too many essential nutrients and decrease animal performance. The aim of the experiment was to evaluate the effect of the new generation of purified bentonites on the efficiency and health status of the pigs. Results Forty-eight slaughtered pigs with an average weight of 31.2 ± 2.6 kg were included in the experiment. The pigs were divided into two groups (2 × 24 pigs). Pigs were slaughtered at an average weight of 66.3 ± 5.2. The first group had a diet without clay (control—C). The second group (treatment—T) was fed a diet with a clay additive (purified bentonite) of 1.5 kg/t. Animals were fed the experimental diet for 35 days. In group T, a higher daily weight gain (by 4.8%) and feed intake (by 2.9%) was observed while the feed conversion decreased by 1.9%. There were no significant differences between the groups of pigs during observation in the evaluation of hematological, biochemical parameters of the blood. Morpho-pathological analysis of the jejunum showed similar signs of moderate lymphoplasmacytic infiltrate in the mucosa in the groups C and T, contained similar number of goblet cells. Conclusion Taken together, the addition of the new generation of bentonite clays did not negatively influence the health status and the performance of pigs.
Between 2014 and 2019, Central Europe was subject to unusually high temperatures and periods of drought due to climate change, with a subsequent occurrence of low and zero flows. As aquatic organisms have shaped their life strategies in direct relation to natural hydrological regimes, any changes to these regimes necessarily lead to a cascade of responses in biota species composition in the ecosystem concerned. Here, we examine changes in aquatic macroinvertebrates assemblage composition and diversity in a small fishless headwater brook in a highland area of the Czech Republic that took place between 2010 and 2019. While flow rates were relatively constant prior to 2014, the hydrological regime was significantly influenced by periods of severe drought between 2017 and 2019, with periods of zero discharge and dry riverbed. The shift from a perennial to an intermittent stream led to an increase in generalist taxa abundance and a decline in lotic taxa, while the abundance of lentic and semi-aquatic taxa was subjected to fluctuations non-related to the hydrological regime (drought occurrence). During the period of droughts, the abundance of taxa recognised as indicators of good quality water declined, while the numbers of those indicating moderately to heavily polluted environments increased.
Abstract The aim of this study was to evaluate the exterior faults in selected Slovak breeds of rabbits of different colour varieties according to a current Book of Rabbit Standards. Of 336 rabbits from 9 exhibitions organized in the territory of the Slovak and Czech Republics, 2 national medium-sized breeds of Liptov Bold-Spotted Rabbit (270 pcs) and Nitra Rabbit (66 pcs) were selected. The qualities and exterior faults of typical breed traits were evaluated in seven positions including: weight, shape, type, coat, top colour (eventually markings), under-colour (eventually intermediate colour), condition and health. Our evaluations showed that the most common exterior faults in these categories were in the: positions, shape, type, coat, and top-colour. In the shape position there were found significant exterior faults, such as slightly protruding hips with slanting rump, and worse legs position with loose skin on the body. In the type position, the faults observed in all selected breeds included: narrow chest, body too lean or too long, more delicate head with ears too fine and longer. The coat was usually thick and less elastic with a lighter under-colour at the base of the skin and non-sharply defined intermediate colour. In the top colour position of evaluated breeds there were numerous deficiencies involving uneven, and incomplete colour, and significant faults in the drawing. The data obtained in this study were innovative, as they represented a new approach that may help to characterize the Slovak breeds of rabbits included in this study and to select individuals with the best exterior traits towards improving the quality of these breeds.
Surgical mesh is widely used not only to treat but also to prevent incisional hernia formation. Despite much effort by material engineers, the 'ideal' mesh mechanically, biologically and surgically easy to use remains elusive. Advances in tissue engineering and nanomedicine have allowed new concepts to be tested with promising results in both small and large animals. Abandoning the concept of a pre-formed mesh completely for a ‘pour in liquid mesh’ has never been tested before. Thirty rabbits underwent midline laparotomy with closure using an absorbable suture and small stitch small bites technique. In addition, their abdominal wall closure was reinforced by a liquid nanofibrous scaffold composed of a fibrin sealant and nanofibres of poly-ε-caprolactone with or without hyaluronic acid or the sealant alone, poured in as an ‘onlay’ over the closed abdominal wall. The animals were killed at 6 weeks and their abdominal wall was subjected to histological and biomechanical evaluations. All the animals survived the study period with no major complication. Histological evaluation showed an eosinophilic infiltration in all groups and foreign body reaction more pronounced in the groups with nanofibres. Biomechanical testing demonstrated that groups treated with nanofibres developed a scar with higher tensile yield strength. The use of nanofibres in a liquid form applied to the closed abdominal wall is easy to use and improves the biomechanical properties of healing fascia at 6 weeks after midline laparotomy in a rabbit model.
