Acoustic surveys play a pivotal role in fisheries management. During the surveys, acoustic signals are sent into the water and the strength of the reflection, so-called backscatter, is recorded. The collected data are typically annotated manually, a process that is both labor-intensive and time-consuming, to support acoustic target classification (ATC). The primary objective of this study is to develop an annotation-free deep learning model that extracts acoustic features and improves the representation of acoustic data. For this purpose, we adopt a self-supervised method inspired by the Self DIstillation with NO Labels (DINO) model. Extracting useful acoustic features is an intricate task due to the inherent variability and complexity in biological targets, as well as environmental and technical factors influencing sound interactions. The proposed model is trained with three sampling methods: random sampling, which ignores class imbalance present in the acoustic survey data; class-balanced sampling, which ensures equal representation of known categories; and intensity-based sampling, which selects data to capture backscatter variations. The quality of extracted features is then evaluated and compared. We show that the extracted features lead to improvement, in comparison to using the untreated data, in the discriminative power of several machine learning methods (k-nearest neighbor (kNN), linear regression, multinomial logistic regression) for ATC. The improvement was measured through higher accuracy in kNN (77.55% vs. 71.93%), Macro AUC in logistic regression (0.92 vs. 0.80), and R2 in linear regression (0.69 vs. 0.45) when comparing extracted features to the untreated data. Our findings highlight the advantage of applying emerging self-supervised techniques in fisheries acoustics. This study thus contributes to the ongoing efforts to improve the efficiency of acoustic surveys in fisheries management.

Acoustic surveys provide important data for fisheries management. During the surveys, ship-mounted echo sounders send acoustic signals into the water and measure the strength of the reflection, so-called backscatter. Acoustic target classification (ATC) aims to identify backscatter signals by categorizing them into specific groups, e.g. sandeel, mackerel, and background (as bottom and plankton). Convolutional neural networks typically perform well for ATC but fail in cases where the background class is similar to the foreground class. In this study, we discuss how to address the challenge of class imbalance in the sampling of training and validation data for deep convolutional neural networks. The proposed strategy seeks to equally sample areas containing all different classes while prioritizing background data that have similar characteristics to the foreground class. We investigate the performance of the proposed sampling methodology for ATC using a previously published deep convolutional neural network architecture on sandeel data. Our results demonstrate that utilizing this approach enables accurate target classification even when dealing with imbalanced data. This is particularly relevant for pixel-wise semantic segmentation tasks conducted on extensive datasets. The proposed methodology utilizes state-of-the-art deep learning techniques and ensures a systematic approach to data balancing, avoiding ad hoc methods.

Machine learning covers a large set of algorithms that can be trained to identify patterns in data. Thanks to the increase in the amount of data and computing power available, it has become pervasive across scientific disciplines. We first highlight why machine learning is needed in marine ecology. Then we provide a quick primer on machine learning techniques and vocabulary. We built a database of & SIM;1000 publications that implement such techniques to analyse marine ecology data. For various data types (images, optical spectra, acoustics, omics, geolocations, biogeochemical profiles, and satellite imagery), we present a historical perspective on applications that proved influential, can serve as templates for new work, or represent the diversity of approaches. Then, we illustrate how machine learning can be used to better understand ecological systems, by combining various sources of marine data. Through this coverage of the literature, we demonstrate an increase in the proportion of marine ecology studies that use machine learning, the pervasiveness of images as a data source, the dominance of machine learning for classification-type problems, and a shift towards deep learning for all data types. This overview is meant to guide researchers who wish to apply machine learning methods to their marine datasets.

The aim of this study is to contribute to the literature by estimating the 5-weeks number of cases/deaths for each continent by using statistical-based prediction models, which are quite effective on simple but small-scale datasets. While Auto.arima, Tbats, Naive, Holt, Thetaf and, Drift models were used for prediction processes root mean square error (RMSE), mean absolute error (MAE), and mean absolute percent error (MAPE) metrics were used for evaluating estimates. According to the confirmed cases MAPE metric values of the 5 continents analyzed, the best predictions for Asia, Africa, Europe, America, and Oceania were done by Thetaf, Naive, Thetaf, Auto.arima, and Auto.arima models, respectively. The use of very limited data for time series estimates such as 57-weeks in the estimation process was a disadvantage. Most models require at least two cycles, 104 weeks of data, to run. Therefore, we could not use models such as neural network autoregressive, multilayer perceptrons, extreme learning machines. The results obtained with the prediction models used in this study aim to make more accurate decisions for the authorized persons dealing with health to be more prepared for future conditions and health systems.