The adsorption of metal onto archaea could affect metal behavior and bioavailability in hypersaline environments where archaea represent the dominant life form. However, the mechanism and thermodynamics of metal adsorption onto halophilic archaea are not well understood. In this study, Cd adsorption experiments and potentiometric titrations were conducted to model metal adsorption by the halophilic archaeon Halobacterium sp.. Cd adsorption onto the archaeal cells exhibits slow adsorption kinetics, taking 8 h to reach steady-state. The extent of Cd adsorption depends strongly on pC(H+) and Cd loading. Desorption of Cd is even slower than adsorption, but exposure of the Cd-adsorbed biomass to high concentrations of cysteine promotes desorption and demonstrates that the distribution of Cd is controlled by reversible adsorption reactions, likely involving sulfhydryl binding of Cd on the cell surface. We conducted potentiometric titration experiments with and without sulfhydryl site blocking to yield a total sulfhydryl site concentration of 91 +/- 28 mu mol/g within the archaeal cell envelope. Using a combination of the X-ray absorption fine structure analysis results from Showalter et al. (2016) and the Cd adsorption measurements and titration data from this study, we construct a surface complexation model of the Cd adsorption behavior. Because the Cd adsorption behavior is likely similar to that of a range of chalcophilic micronutrients, the importance of Cd-sulfhydryl binding suggests that the production of high affinity sulfhydryl binding sites by the archaea may represent an adaptive strategy for halophiles to obtain metal nutrients in environments in which aqueous metal-chloride complexation dominates the speciation for many metals. (C) 2020 Elsevier Ltd. All rights reserved.

Mineral nanoparticles (NPs) can play important roles in metal fate and transport; yet, they often exhibit different behaviors with respect to metal sorption, especially when NP size drops below a few tens of nanometers. Studies of NP size effects on metal uptake often compare sorption "edges" for different NPs at a given metal concentration over a range of pH values. Because surface area increases dramatically as NP size decreases, failure to normalize to particle surface area (rather than mass) in "edge" experiments can lead to different metal- to mineral-surface ratios in reaction vessels. We explored the effects of hematite NP size (8, 40 nm) on cadmium (Cd) uptake in systems near Cd mineral (super)saturation, comparing mass-normalized (MN) and surface area-normalized (SAN) approaches. An similar to 1 pH unit shift in sorption edge was observed as a function of NP size, regardless of approach. Effects of experimental approach on mechanism were most pronounced at pH 9.0, where adsorption and minor precipitation were observed for 8 nm NPs, a more balanced mixture of adsorption and precipitation on 40 nm SAN NPs, and substantially more precipitation on 40 nm MN NPs. Experimental results thus reconfirm that NP size can affect metal sorption, underscoring the need to design experiments that explicitly account for NP surface area differences. Results also suggest that development of conceptual and quantitative models for the effects of NPs on metal mobility will need to take into account the potential effects of NP size on reactivity.

Following the Q2XAFS Workshop and Satellite to IUCr Congress 2017 on `Data Acquisition, Treatment, Storage - quality assurance in XAFS spectroscopy', a summary is given of the discussion on different aspects of a XAFS experiment that affect data quality. Some pertinent problems ranging from sources and minimization of noise to harmonic contamination and uncompensated monochromator glitches were addressed. Also, an overview is given of the major limitations and pitfalls of a selection of related methods, such as photon-out spectroscopies and energy-dispersive XAFS, and of increasingly common applications, namely studies at high pressure, and time-resolved investigations of catalysts in operando. Advice on how to avoid or deal with these problems and a few good practice recommendations are reported, including how to correctly report results.

Round robin studies have been used across fields of science for quality control testing and to investigate laboratory dependencies and cross-platform inconsistencies as well as to drive forward the improvement of understanding of experimental systems, systematic effects and theoretical limitations. Here, following the Q2XAFS Workshop and Satellite to IUCr Congress 2017 on `Data Acquisition, Treatment, Storage - quality assurance in XAFS spectroscopy', a mechanism is suggested for a suitable study across XAFS (X-ray absorption fine-structure) beamlines and facilities, to enable each beamline to cross-calibrate, provide representative test data, and to enable collaborative cross-facility activities to be more productive.

We report for the first time the synthesis of large, free-standing, Mo2O2(μ-S)2(Et2dtc)2 (MoDTC) nanosheets (NSs), which exhibit an electron-beam induced crystalline-to-amorphous phase transition. Both electron beam ionization and femtosecond (fs) optical excitation induce the phase transition, which is size-, morphology-, and composition-preserving. Resulting NSs are the largest, free-standing regularly shaped two-dimensional amorphous nanostructures made to date. More importantly, amorphization is accompanied by dramatic changes to the NS electrical and optical response wherein resulting amorphous species exhibit room-temperature conductivities 5 orders of magnitude larger than those of their crystalline counterparts. This enhancement likely stems from the amorphization-induced formation of sulfur vacancy-related defects and is supported by temperature-dependent transport measurements, which reveal efficient variable range hopping. MoDTC NSs represent one instance of a broader class of transition metal carbamates likely having applications because of their intriguing electrical properties as well as demonstrated ability to toggle metal oxidation states.

Remediation and prevention of environmental contamination by toxic metals is an ongoing issue. Additionally, improving water filtration systems is necessary to prevent toxic metals from circulating through the water supply. Graphene oxide (GO) is a highly sorptive material for a variety of heavy metals under different ionic strength conditions over a wide pH range, making it a promising candidate for use in metal adsorption from contaminated sites or in filtration systems. We present X-ray absorption fine structure (XAFS) spectroscopy results investigating the binding environment of Cd (II), U(VI) and Pb(II) ions onto multi-layered graphene oxide (MLGO). This study shows that the binding environment of each metal onto the MLGO is unique, with different behaviors governing the sorption as a function of pH. For Cd sorption to MLGO, the same mechanism of electrostatic attraction between the MLGO and the Cd+2 ions surrounded by water molecules prevails over the entire pH range studied. The U(VI), present in solution as the uranyl ion, shows only subtle changes as a function of pH, likely due to the varied speciation of uranium in solution. The adsorption of the U to the MLGO is through a covalent, inner-sphere bond. The only metal from this study where the dominant adsorption mechanism to the MLGO changes with pH is Pb. In this case, under lower pH conditions, Pb is bound onto the MLGO through dominantly outer-sphere, electrostatic adsorption, while under higher pH conditions, the bonding changes to be dominated by inner-sphere, covalent adsorption. Since each of the metals in this study show unique binding properties, it is possible that MLGO could be engineered to effectively adsorb specific metal ions from solution and optimize environmental remediation or filtration for each metal.

Iron-incorporated nickel-based materials show promise as catalysts for the oxygen evolution reaction (OER) half-reaction of water electrolysis. Nickel has also exhibited high catalytic activity for methanol oxidation, particularly when in the form of a bimetallic catalyst. In this work, bimetallic iron-nickel nanoparticles were synthesized using a multistep procedure in water under ambient conditions. When compared to monometallic iron and nickel nanoparticles, Fe-Ni nanoparticles show enhanced catalytic activity for both OER and methanol oxidation under alkaline conditions. At 1 mA/cm(2), the overpotential for monometallic iron and nickel nanoparticles was 421 and 476 mV, respectively, while the bimetallic Fe-Ni nanoparticles had a greatly reduced overpotential of 256 mV. At 10 mA/cm(2), bimetallic Fe-Ni nanoparticles had an overpotential of 311 mV. Spectroscopy characterization suggests that the primary phase of nickel in Fe-Ni nanoparticles is the more disordered alpha phase of nickel hydroxide.

Bimetallic nanoparticles are of immense scientific and technological interest given the synergistic properties observed when two different metallic species are mixed at the nanoscale. This is particularly prevalent in catalysis, where bimetallic nanoparticles often exhibit improved catalytic activity and durability over their monometallic counterparts. Yet despite intense research efforts, little is understood regarding how to optimize bimetallic surface composition and structure synthetically using rational design principles. Recently, it has been demonstrated that peptide-enabled routes for nanoparticle synthesis result in materials with sequence-dependent catalytic properties, providing an opportunity for rational design through sequence manipulation. In this study, bimetallic PdAu nanoparticles are synthesized with a small set of peptides containing known Pd and Au binding motifs. The resulting nanoparticles were extensively characterized using high-resolution scanning transmission electron microscopy, X-ray absorption spectroscopy, and high-energy X-ray diffraction coupled to atomic pair distribution function analysis. Structural information obtained from synchrotron radiation methods was then used to generate model nanoparticle configurations using reverse Monte Carlo simulations, which illustrate sequence dependence in both surface structure and surface composition. Replica exchange with solute tempering molecular dynamics simulations were also used to predict the modes of peptide binding on monometallic surfaces, indicating that different sequences bind to the metal interfaces via different mechanisms. As a testbed reaction, electrocatalytic methanol oxidation experiments were performed, wherein differences in catalytic activity are clearly observed in materials with identical bimetallic composition. Taken together, this study indicates that peptides could be used to arrive at bimetallic surfaces with enhanced catalytic properties, which could be leveraged for rational bimetallic nanoparticle design using peptide-enabled approaches.

Environmental toxic metal contamination remediation and prevention is an ongoing issue. Graphene oxide is highly sorptive for many heavy metals over a wide pH range under different ionic strength conditions. We present x-ray absorption fine structure (XAFS) spectroscopy results investigating the binding environment of Pb(II), Cd(II) and U(VI) ions onto multi-layered graphene oxide (MLGO). Analysis indicates that the dominant sorption mechanism of Pb to MLGO changes as a function of pH, with increasing inner sphere contribution as pH increases. In contrast, the sorption mechanism of Cd to MLGO remains constant under the studied pH range. This adsorption mechanism is an electrostatic attraction between the hydrated Cd+2 ion and the MLGO surface. The U(VI), present as the uranyl ion, changes only subtly as a function of pH and is bound to the surface via an inner sphere bond. Knowledge of the binding mechanism for each metal is necessary to help in optimizing environmental remediation or prevention in filtration systems.

X-ray absorption spectroscopy (XAS) and cadmium (Cd) isotherm experiments determine how Cd adsorbs to the surface of halophilic archaeon Halobacterium noricense. This archaeon, isolated from the Waste Isolation Pilot Plant (WIPP) near Carlsbad, New Mexico could be involved with the transport of toxic metals stored in the transuranic waste in the salt mine. The isotherm experiments show that adsorption is relatively constant across the tolerable pH range for H. noricense. The XAS results indicate that Cd adsorption occurs predominately via a sulfur site, most likely sulfhydryl, with the same site dominating all measured pH values.

An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.

The objective of this investigation was to develop a surface complexation modeling approach to account for proton and metal (Cd, Pb) binding onto many-layered graphene oxide (MLGO) across a range of pH and ionic strength conditions. MLGO particles exhibit large buffering capacities between pH 3 and pH 10 and the buffering behavior is only nominally influenced by ionic strength. In contrast, batch metal sorption experiments illustrate that the striking capacity of MLGO to sorb metals substantially diminishes with increases in ionic strength. X-ray absorption spectroscopy measurements were used to establish reaction stoichiometries and indicate that both Cd and Pb associate with single sites on the MLGO surface. The difference in sorption behaviors for protons and metals is best modeled using a 4-site non-electrostatic surface complexation model that accounts for ionic strength effects as a competition between Na from the background electrolyte and Cd/Pb for available MLGO sorption sites. Using this approach, titration data are used to constrain the site concentrations and pK(a) values for MLGO binding sites. The pK(a) values (+/- 1 sigma) are calculated as 4.55 (+/- 0.91), 6.52 (+/- 0.49), 8.48 (+/- 0.21), and 9.98 (+/- 0.21). We then use these parameters and the metal sorption data to determine thermodynamic stability constants for each important Cd-and Pb-MLGO surface complex. The site concentrations and equilibrium constants provided herein are critical for developing and testing remediation strategies for specific water chemistries. (C) 2014 Elsevier B.V. All rights reserved.

Successive ionic layer adsorption and reaction (SILAR) is a popular method of depositing the metal chalcogenide semiconductor layer on the mesoscopic metal oxide films for designing quantum-dot-sensitized solar cells (QDSSCs) or extremely thin absorber (ETA) solar cells. While this deposition method exhibits higher loading of the light-absorbing semiconductor layer than direct adsorption of presynthesized colloidal quantum dots, the chemical identity of these nanostructures and the evolution of interfacial structure are poorly understood. We have now analyzed step-by-step SILAR deposition of CdSe films on mesoscopic TiO2 nanoparticle films using X-ray absorption near-edge structure analysis and probed the interfacial structure of these films. The film characteristics interestingly show dependence on the order in which the Cd and Se are deposited, and the CdSe-TiO2 interface is affected only during the first few cycles of deposition. Development of a SeO2 passivation layer in the SILAR-prepared films to form a TiO2/SeO2/CdSe junction facilitates an increase in photocurrents and power conversion efficiencies of quantum dot solar cells when these films are integrated as photoanodes in a photoelectrochemical solar cell.

Group 6 complexes M(ONO)2 (M = Cr, Mo, W; ONO = bis(2-oxy-3,5-di-tert-butylphenyl)amide) are prepared by the reaction of divalent metal halide precursors with Pb(ONO(Q))2. Analogous complexes containing the 2,4,6,8-tetra-tert-butyl-1,9-dioxophenoxazinate ligand (DOPO) are prepared by protonolysis of chromocene with H(DOPO(Q)) or by reaction of Pb(DOPO(Q))2 with M2Br4(CO)8 (M = Mo, W). The molybdenum and tungsten complexes are symmetrical, octahedral compounds for which spectroscopic data are consistent with M(VI) complexes with fully reduced [L(Cat)](3-) ligands. Quantitative analysis of the intraligand bond lengths, by comparison with literature standards, allows calculation of metrical oxidation states (MOS) for the ONO ligands. The MOS values of the tungsten and molybdenum complexes indicate that π donation from the ligand is weak and that differences between the ONO and DOPO ligands are small. In both the solid state and in solution, Cr(DOPO)2 is paramagnetic with localized quinone and semiquinone ligands bound to Cr(III). The geometry and electronic structure of Cr(ONO)2 differ in the solid state and in solution, as determined by crystallography, magnetic measurements, and Cr K-edge X-ray absorption spectroscopy. In solution, the structure resembles that of the DOPO analogue. In contrast, solid Cr(ONO)2 is a singlet, and X-ray absorption near-edge spectroscopy indicates that the chromium is significantly more oxidized in the solid state than in solution. An electronic description compounds to that of the tungsten and molybdenum analogues, but with considerably more charge transfer from the ligand to chromium via π donation, is in agreement with the experimental observations.

The mobility of uranium (U) in subsurface environments is controlled by interrelated adsorption, redox, and precipitation reactions. Previous work demonstrated the formation of nanometer-sized hydrogen uranyl phosphate (abbreviated as HUP) crystals on the cell walls of Bacillus subtilis, a non-U(VI)-reducing, Gram-positive bacterium. The current study examined the reduction of this biogenic, cell-associated HUP mineral by three dissimilatory metal-reducing bacteria, Anaeromyxobacter dehalogenans strain K, Geobacter sulfurreducens strain PCA, and Shewanella putrefaciens strain CN-32, and compared it to the bioreduction of abiotically formed and freely suspended HUP of larger particle size. Uranium speciation in the solid phase was followed over a 10- to 20-day reaction period by X-ray absorption fine structure spectroscopy (XANES and EXAFS) and showed varying extents of U(VI) reduction to U(IV). The reduction extent of the same mass of HUP to U(IV) was consistently greater with the biogenic than with the abiotic material under the same experimental conditions. A greater extent of HUP reduction was observed in the presence of bicarbonate in solution, whereas a decreased extent of HUP reduction was observed with the addition of dissolved phosphate. These results indicate that the extent of U(VI) reduction is controlled by dissolution of the HUP phase, suggesting that the metal-reducing bacteria transfer electrons to the dissolved or bacterially adsorbed U(VI) species formed after HUP dissolution, rather than to solid-phase U(VI) in the HUP mineral. Interestingly, the bioreduced U(IV) atoms were not immediately coordinated to other U(IV) atoms (as in uraninite, UO2) but were similar in structure to the phosphate-complexed U(IV) species found in ningyoite [CaU(PO4)2·H2O]. This indicates a strong control by phosphate on the speciation of bioreduced U(IV), expressed as inhibition of the typical formation of uraninite under phosphate-free conditions.

The mobility of uranium (U) in subsurface environments is controlled by interrelated adsorption, redox, and precipitation reactions. Previous work demonstrated the formation of nanometer-sized hydrogen uranyl phosphate (abbreviated as HUP) crystals on the cell walls of Bacillus subtilis, a non-U-reducing, Gram-positive bacterium. The current study examined the reduction of this biogenic, cell-associated HUP mineral by three dissimilatory metal-reducing bacteria, Anaeromyxobacter dehalogenans strain K, Geobacter sulfurreducens strain PCA, and Shewanella putrefaciens strain CN-32, and compared it to the bioreduction of abiotically formed and freely suspended HUP of larger particle size. Uranium speciation in the solid phase was followed over a 10to 20-day reaction period by X-ray absorption fine structure spectroscopy (XANES and EXAFS) and showed varying extents of U reduction to U. The reduction extent of the same mass of HUP to U was consistently greater with the biogenic than with the abiotic material under the same experimental conditions. A greater extent of HUP reduction was observed in the presence of bicarbonate in solution, whereas a decreased extent of HUP reduction was observed with the addition of dissolved phosphate. These results indicate that the extent of U reduction is controlled by dissolution of the HUP phase, suggesting that the metal-reducing bacteria transfer electrons to the dissolved or bacterially adsorbed U species formed after HUP dissolution, rather than to solid-phase U in the HUP mineral. Interestingly, the bioreduced U atoms were not immediately coordinated to other U atoms (as in uraninite, UO2) but were similar in structure to the phosphate-complexed U IV species found in ningyoite [CaU(PO4)2·H2O]. This indicates a strong control by phosphate on the speciation of bioreduced U , expressed as inhibition of the typical formation of uraninite under phosphate-free conditions.

Cd1-xZnxS (CdZnS) is a promising replacement for the CdS buffer layers in copper indium gallium (dOselenide (CIGS) solar cells because the wider band gap of CdZnS offers improved optical transmittance of blue light. Chemical bath deposition (CBD) is the state-of-the-art deposition method for CdS and CdZnS. However, CBD of CdZnS is poorly understood, and relationships between bath composition and stoichiometry, microstructure, and optoelectronic properties of the deposited film are lacking. We introduce CBD using a continuous flow microreactor as a new technique to rapidly explore a wide variety of deposition conditions on a single substrate using spatially dependent characterization. X-ray diffraction and X-ray absorption spectroscopy indicate that the film is a mixture of nanocrystalline CdZnS and amorphous Zn(O,OH,S). Over the length of a single substrate, films showed increasing Zn:Cd ratio in the nanocrystalline phase, increasing amorphous content, and increasing quantum confinement, and resultant monotonic increase in band gap from 2.42 to 2.75 eV. Microreactor CBD (mu R-CBD) enables rapid identification of CdZnS compositions that are ideal candidates for thin film photovoltaics, as well as determination of the CBD conditions required to deposit them.

In this study, we examine the initial interactions between aqueous Au(III)-hydroxide-chloride aqueous complexes and bacteria by measuring the effects of non-metabolizing cells on the speciation and distribution of Au. We conducted batch Au(III) removal experiments, measuring the kinetics and pH dependence of Au removal, and tracking valence state transformations and binding environments using XANES spectroscopy. These experiments were conducted using non-metabolizing cells of Bacillus subtilis or Pseudomonas putida suspended in a 5ppm Au(III)-(hydroxide)-chloride starting solution of 0.1M NaClO4 to buffer ionic strength. Both bacterial species removed greater than 85% of the Au from solution after 2h of exposure time below approximately pH 5. Above pH 5, the extent of Au removed from solution decreased with increasing pH, with less than approximately 10% removal of Au from solution above pH 7.5. Kinetics experiments indicated that the Au removal with both bacterial species was rapid at pH 3, and slowed with increasing pH. Reversibility experiments demonstrated that (1) once the Au was removed from solution, adjusting 35 the pH alone did not remobilize the Au into solution and (2) the presence of cysteine in solution in the reversibility experiments caused Au to desorb, suggesting that the Au was not internalized within the bacterial cells. Our results suggest that Au removal occurs as a two-step pH-dependent adsorption reduction process. The speciation of the aqueous Au and the bacterial surface appears to control the rate of Au removal from solution. Under low pH conditions, the cell walls are only weakly negatively charged and aqueous Au complexes adsorb readily and rapidly. With increasing pH, the cell wall becomes more negatively charged, slowing adsorption significantly. The XANES data demonstrate that the reduction of Au(III) by bacterial exudates is slower and less extensive than the reduction observed in the bacteria-bearing systems, and we conclude that Au reduction occurs most rapidly and extensively upon interaction with cell wall functional groups.