The Ocean Biodiversity Information System (OBIS) and the Global Ocean Observing System (GOOS) play crucial roles in supporting international agreements focused on protecting marine biodiversity. These systems provide essential data and infrastructure for monitoring, assessing, and managing ocean biodiversity, directly contributing to the objectives of both the Convention on Biological Diversity (CBD) Kunming-Montreal Global Biodiversity Framework (GBF) and the Agreement under the United Nations Convention on the Law of the Sea on the Conservation and Sustainable Use of Marine Biological Diversity of Areas Beyond National Jurisdiction (BBNJ).As the ocean component of a Global Biodiversity Observing System (GBiOS), both OBIS and GOOS are recognised by CBD COP16 for their role in supporting the GBF monitoring framework, enabling countries to track biodiversity and assess progress towards the GBF 2050 goals and 2030 targets of ocean, species, and ecosystem protection. OBIS is specifically included in the GBF framework to develop complementary indicators for Target 20 ("Strengthen Capacity-Building, Technology Transfer, and Scientific and Technical Cooperation for Biodiversity") and Target 21 ("Ensure That Knowledge Is Available and Accessible To Guide Biodiversity Action").The BBNJ Agreement emphasizes transparency and data sharing, especially through its Clearing-House Mechanism, to support the information requirements for environmental impact assessments (EIAs) prior to authorizing activities in areas beyond national jurisdiction (ABNJ). It also manages access and benefit sharing on Marine Genetic Resources (MGRs), as well as the development of area-based management tools, such as marine protected areas. GOOS, through the definition of its essential ocean variables can guide the observing community to ensure that concurrent and complimentary observations required for assessing change and the effects of impacts are collected in standardised and robust ways. OBIS, with its extensive database of marine life observations, can directly contribute to this mechanism by providing data essential for assessing potential biodiversity impacts, guiding the EIA process, identifying risks, and informing mitigation measures. Additionally, OBIS data supports the identification of areas that need protection and informs design of effective management strategies for these regions. In addition, when Implementing sample batch identifiers would allow OBIS to track and trace the use of MGRs.OBIS and GOOS are essential components in the global effort to conserve and sustainably use marine biodiversity. By providing open access to data, coordinating observations, and supporting key processes outlined in international agreements like the CBD GBF and the BBNJ, they empower countries and stakeholders to make informed decisions, monitor progress, and ultimately achieve the goals of these agreements.
The Ocean Biodiversity Information System (OBIS) (Klein et al. 2019) is a global database of marine biodiversity and associated environmental data, which provides critical information to researchers and policymakers worldwide. Ensuring the accuracy and consistency of the data in OBIS is essential for its usefulness and value, not only to the scientific community but also to the science-policy interface. The OBIS Data Quality Assessment and Enhancement Project Team (QCPT), formed in 2019 by the OBIS steering group, aims to assess and enhance data quality. It has been working on three categories of activities for this purpose: Data quality enhancement and management The OBIS QCPT organized data laundry events to identify and address data quality issues of published OBIS datasets. Furthermore, individual OBIS nodes were invited to give their data-processing presentations in the monthly meetings to foster knowledge sharing and collaborative problem-solving focused on data quality. Data quality issues and solutions highlighted in the presentations and data laundry events were documented in a dedicated GitHub repository as GitHub issues. The solutions for data quality issues and marine-specific pre-publication quality control tools, designed to identify the data quality issues, were provided as feedback to the OBIS Capacity Development Task Team. These inputs were used to create training resources (see OBIS manual, upcoming OBIS training course hosted on OceanTeacher Global Academy) aimed at preventing these issues. Standardization of OBIS data processing pipeline As OBIS uses the Darwin Core standard (Wieczorek et al. 2012), the use of standardized tests and assertions in the data processing pipeline is encouraged. To achieve this, the OBIS QCPT aligned OBIS quality checks with a subset of core tests and assertions (Chapman et al. 2020) developed by the Biodiversity Information Standards (TDWG) Biodiversity Data Quality (BDQ) Task Group 2 (TG2) (Chapman et al. 2020) as tracked in this GitHub issue. Not all default parameters of the core tests and assertions are optimal for marine biodiversity data. The OBIS QCPT met monthly to determine suitable parameters for customizing the tests. The pipeline produces a data quality report for each dataset with quality flags that indicate potential data quality issues, enabling node managers and data providers to review the flagged records. Community engagement The OBIS QCPT led a survey among data users to gather insights into OBIS data quality issues and bridge the gap between the current implementation and user expectations. The survey findings enabled OBIS to prioritize issues to be addressed, as summarized in Section 2.2.2 of the 11th OBIS Steering Group meeting report. In addition to engaging with data users, the OBIS QCPT also served as a platform to discuss questions related to the use of Darwin Core from the nodes and provided feedback for the term discussions. In summary, the OBIS QCPT improves marine species data reliability and usability through transparent and participatory approaches, fostering continuous improvement. Collaborative efforts, standardized procedures, and knowledge sharing advance OBIS' mission of providing high quality biodiversity data for research, conservation, and ocean management.
Calls for science to innovate by including stakeholders' in the creation of marine knowledge have been rising, to create impact beyond laboratories and to contribute to the empowerment of local communities when interacting with marine and coastal ecosystems. As a transdisciplinary group of scientists working on co-designing research projects, this paper draws upon our experiences to further define the concept and seek to improve the process of co-design. We highlight the key barriers for co-design processes to contribute to increasing stakeholders' capacity to produce intended effects on marine policy. We suggest that stakeholder engagement requires overcoming the resistance to non-scientific knowledge sources and considering power asymmetries in the governance and management of the ocean. We argue that power and politics must be placed at the very heart of the production of a co-designed marine science and must be an aspect of the facilitation itself. In this paper, we aim to provide insights to navigate throughout the journey of stakeholder engagement, with the critical perspective necessary to make this process socially and environmentally effective.
Biological ocean science has a long history; it goes back millennia, whereas the related data services have emerged in the recent digital era of the past decades. To understand where we come from—and why data services are so important—we will start by taking you back to the rise in the study of marine biology—marine biodiversity—and its key players, before immersing ourselves in the data life cycle, past and present joint global initiatives, and systems that allow(ed) scientists to more easily access biological data, online services through some simple keyboard strokes, and the many challenges we still encounter on a daily basis when dealing with these types of data.
Plankton form the base of the marine food web and are sensitive indicators of environmental change. Plankton time series are therefore an essential part of monitoring progress towards global biodiversity goals, such as the Convention on Biological Diversity Aichi Targets, and for informing ecosystem-based policy, such as the EU Marine Strategy Framework Directive. Multiple plankton monitoring programmes exist in Europe, but differences in sampling and analysis methods prevent the integration of their data, constraining their utility over large spatio-temporal scales. The Plankton Lifeform Extraction Tool brings together disparate European plankton datasets into a central database from which it extracts abundance time series of plankton functional groups, called "lifeforms", according to shared biological traits. This tool has been designed to make complex plankton datasets accessible and meaningful for policy, public interest, and scientific discovery. It allows examination of large-scale shifts in lifeform abundance or distribution (for example, holoplankton being partially replaced by meroplankton), providing clues to how the marine environment is changing. The lifeform method enables datasets with different plankton sampling and taxonomic analysis methodologies to be used together to provide insights into the response to multiple stressors and robust policy evidence for decision making. Lifeform time series generated with the Plankton Lifeform Extraction Tool currently inform plankton and food web indicators for the UK's Marine Strategy, the EU's Marine Strategy Framework Directive, and for the Convention for the Protection of the Marine Environment of the North-East Atlantic (OSPAR) biodiversity assessments. The Plankton Lifeform Extraction Tool currently integrates 155 000 samples, containing over 44 million plankton records, from nine different plankton datasets within UK and European seas, collected between 1924 and 2017. Additional datasets can be added, and time series can be updated. The Plankton Lifeform Extraction Tool is hosted by The Archive for Marine Species and Habitats Data (DASSH) at https://www.dassh.ac.uk/lifeforms/ (last access: 22 November 2021, Ostle et al., 2021). The lifeform outputs are linked to specific, DOI-ed, versions of the Plankton Lifeform Traits Master List and each underlying dataset.
Maintaining healthy, productive ecosystems in the face of pervasive and accelerating human impacts including climate change requires globally coordinated and sustained observations of marine biodiversity. Global coordination is predicated on an understanding of the scope and capacity of existing monitoring programs, and the extent to which they use standardized, interoperable practices for data management. Global coordination also requires identification of gaps in spatial and ecosystem coverage, and how these gaps correspond to management priorities and information needs. We undertook such an assessment by conducting an audit and gap analysis from global databases and structured surveys of experts. Of 371 survey respondents, 203 active, long-term (>5 years) observing programs systematically sampled marine life. These programs spanned about 7% of the ocean surface area, mostly concentrated in coastal regions of the United States, Canada, Europe, and Australia. Seagrasses, mangroves, hard corals, and macroalgae were sampled in 6% of the entire global coastal zone. Two-thirds of all observing programs offered accessible data, but methods and conditions for access were highly variable. Our assessment indicates that the global observing system is largely uncoordinated which results in a failure to deliver critical information required for informed decision-making such as, status and trends, for the conservation and sustainability of marine ecosystems and provision of ecosystem services. Based on our study, we suggest four key steps that can increase the sustainability, connectivity and spatial coverage of biological Essential Ocean Variables in the global ocean: (1) sustaining existing observing programs and encouraging coordination among these; (2) continuing to strive for data strategies that follow FAIR principles (findable, accessible, interoperable, and reusable); (3) utilizing existing ocean observing platforms and enhancing support to expand observing along coasts of developing countries, in deep ocean basins, and near the poles; and (4) targeting capacity building efforts. Following these suggestions could help create a coordinated marine biodiversity observing system enabling ecological forecasting and better planning for a sustainable use of ocean resources.
In this paper we outline the stakeholder-led approaches in the development of biological data products to support effective conservation, management and policy development. The requirements of a broad range of stakeholders and iterative, structured processes framed the development of tools, models and maps that support the FAIR (Findable, Accessible, Interoperable, Reusable) data principles. By structuring the resultant data products around the emerging biological Essential Ocean Variables, and through the engagement with a broad range of end-users, the EMODnet (European Marine Observation and Data Network) Biology project has delivered a suite of demonstration data products. These products are presented in the European Atlas of Marine Life, an online resource demonstrating the value of open marine biodiversity data and help to answer fundamental and policy-driven questions related to managing the natural and anthropogenic impacts in European waters.
Marine data are needed formany purposes: for acquiring a better scientific understanding of the marine environment, but also, increasingly, as marine knowledge for decision making as well as developing products and services supporting economic growth. Data must be of sufficient quality to meet the specific users' needs. It must also be accessible in a timely manner. And yet, despite being critical, this timely access to known-quality data proves challenging. Europe's marine data have traditionally been collected by a myriad of entities with the result that much of our data are scattered throughout unconnected databases and repositories. Even when data are available, they are often not compatible, making the sharing of the information and data aggregation particularly challenging. In this paper, we present how the European Marine Observation and Data network (EMODnet) has developed over the last decade to tackle these issues. Today, EMODnet is comprised of more than 150 organizations which gather marine data, metadata, and data products and make them more easily accessible for a wider range of users. EMODnet currently consists of seven sub-portals: bathymetry, geology, physics, chemistry, biology, seabed habitats, and human activities. In addition, Sea-basin Checkpoints have been established to assess the observation capacity in the North Sea, Mediterranean, Atlantic, Baltic, Artic, and Black Sea. The Checkpoints identify whether the observation infrastructure in Europe meets the needs of users by undertaking a number of challenges. To complement this, a Data Ingestion Service has been set up to tackle the problem of the wealth of marine data that remain unavailable, by reaching out to data holders, explaining the benefits of sharing their data and offering a support service to assist them in releasing their data and making them available through EMODnet. The EMODnet Central Portal (www.emodnet.eu) provides a single point of access to these services, which are free to access and use. The strategic vision of EMODnet in the next decade is also presented, together with key focal areas toward a more user-oriented service, including EMODnet for business, internationalization for global users, and stakeholder engagement to connect the diverse communities across the marine knowledge value chain.
Essential Biodiversity Variables (EBVs) allow observation and reporting of global biodiversity change, but a detailed framework for the empirical derivation of specific EBVs has yet to be developed. Here, we re-examine and refine the previous candidate set of species traits EBVs and show how traits related to phenology, morphology, reproduction, physiology and movement can contribute to EBV operationalization. The selected EBVs express intra-specific trait variation and allow monitoring of how organisms respond to global change. We evaluate the societal relevance of species traits EBVs for policy targets and demonstrate how open, interoperable and machine-readable trait data enable the building of EBV data products. We outline collection methods, meta(data) standardization, reproducible workflows, semantic tools and licence requirements for producing species traits EBVs. An operationalization is critical for assessing progress towards biodiversity conservation and sustainable development goals and has wide implications for data-intensive science in ecology, biogeography, conservation and Earth observation.
This paper reviews the utility and availability of biological and ecological traits for marine species so as to prioritise the development of a world database on marine species traits. In addition, the 'status' of species for conservation, that is, whether they are introduced or invasive, of fishery or aquaculture interest, harmful, or used as an ecological indicator, were reviewed because these attributes are of particular interest to society. Whereas traits are an enduring characteristic of a species and/or population, a species status may vary geographically and over time. Criteria for selecting traits were that they could be applied to most taxa, were easily available, and their inclusion would result in new research and/or management applications. Numerical traits were favoured over categorical. Habitat was excluded as it can be derived from a selection of these traits. Ten traits were prioritized for inclusion in the most comprehensive open access database on marine species (World Register of Marine Species), namely taxonomic classification, environment, geography, depth, substratum, mobility, skeleton, diet, body size and reproduction. These traits and statuses are being added to the database and new use cases may further subdivide and expand upon them.
BACKGROUND:Reliable taxonomy underpins communication in all of biology, not least nature conservation and sustainable use of ecosystem resources. The flexibility of taxonomic interpretations, however, presents a serious challenge for end-users of taxonomic concepts. Users need standardised and continuously harmonised taxonomic reference systems, as well as high-quality and complete taxonomic data sets, but these are generally lacking for non-specialists. The solution is in dynamic, expertly curated web-based taxonomic tools. The Pan-European Species-directories Infrastructure (PESI) worked to solve this key issue by providing a taxonomic e-infrastructure for Europe. It strengthened the relevant social (expertise) and information (standards, data and technical) capacities of five major community networks on taxonomic indexing in Europe, which is essential for proper biodiversity assessment and monitoring activities. The key objectives of PESI were: 1) standardisation in taxonomic reference systems, 2) enhancement of the quality and completeness of taxonomic data sets and 3) creation of integrated access to taxonomic information. NEW INFORMATION:This paper describes the results of PESI and its future prospects, including the involvement in major European biodiversity informatics initiatives and programs.
Marine and coastal policy in the UK has faced a number of significant changes in recent years, most notably the passing of the Marine and Coastal Access Act in 2009. These changes have brought significant challenges and opportunities for all those involved in the management and use of the UK's marine and coastal environment. This new era of marine policy inspired the UK's first Marine and Coastal Policy forum held in June 2011. In this introductory paper the global context of marine policy changes and the themes which emerged from the forum, forming the basis of the articles in this special issue, are outlined. It is concluded that there is a high level of engagement, capacity and willingness of key stakeholders to work collaboratively to address the environmental, social and economic complexities of managing the marine and coastal environment. It is both evident and encouraging that progress is being made and the many challenges faced in this new era give rise to a number of opportunities to develop new ideas and effective mechanisms for finding solutions.
This report describes an indicator of the abundance, extent and impact of invasive non-native species in Great Britain. The main ideas and options for the abundance indicator and for the impact indicator are considered. A third type of indicator, the annual rate of establishment of new non-native species, is outlined, with provisional data presented only for England. Most of the options for the abundance indicator do not in fact measure abundance, but use either frequency in samples or frequency in recording scheme data as a substitute. An exception is the Breeding Bird Survey, for which numbers of individuals are counted. Several well-recorded groups of organisms have no non-native species (e.g. butterflies and lichens) or exceedingly few non-native species (macro-moths). Datasets selected for the abundance indicator were the Breeding Bird Survey (birds and mammals), Countryside Survey (vascular plants), British Bryological Society data (bryophytes) and Marine Biological Society data (marine organisms). From samples of records in each species group, the non-native component was calculated as proportion of all species sampled. This provided a temporal trend in non-native proportions, which were calculated separately for England, Scotland and Wales. The GB trend was derived by combining the trends for each component country, weighted by the area of each. Finally, the overall trend was calculated as a weighted geometric mean of trends for each species group, converted to an index by dividing by a constant to start at 1 in the baseline year 1990. The weights applied were birds 20%, mammals 20%, vascular plants 30%, bryophytes 10% and marine organisms 20%. There were no suitable datasets from the freshwater environment. No direct measure of impact could feasibly be calculated for all invasive species in Great Britain. As a substitute, an indicator based on the extent of occupation by invasive species was adopted. The methodology for the indicator was based on a scheme developed by the Belgian Forum on Invasive Species. First, a list of the most invasive species was compiled, using a simplified environmental impact assessment protocol to assign species to threat categories. Then the extent of each invasive species was scored for 1960, 1970, 1980, 1990, 2000 and 2007, on a 5-point scale ranging from 0 (absent) to 4 (present in more than half the territory). Extent scores were added to obtain the indicator. Over the period 1990-2007, the mean indexed proportion of records of non-native species in samples of birds, mammals, plants and marine life rose by 23%. Except for mammals, the absolute proportion was still only about 1% of the total. The assessment protocol assigned 49 species in Great Britain to the highest threat category. There were 3 marine plants, 16 marine animals, 4 freshwater plants, 8 freshwater animals, 8 terrestrial plants and 10 terrestrial animals. Over the period 1990-2007, the summed extent scores of these invasive non-native species rose by 40%. The increase of invasive species was particularly large in the freshwater and marine environments. Although non-native species are a potential threat, they are still only a small proportion of the animals and plants to be found in most of the land area and coasts of Great Britain. Vertebrates stand out as the most invasive group. For all groups of organisms reported here, England was the country most affected by non-native species. Scotland was the least affected. Wales was intermediate. In 2008, values of the impact indicator for the three countries were respectively 135, 73 and 95. Most species groups showed a trend over time towards an increasingly non-native biota. If the indicator is to be developed further, the main priority is to include freshwater species in the abundance component. Because the list of invasive species depends on expert judgement, it needs to be reviewed and if necessary updated at regular intervals. Further analytical work is desirable, to improve the signal obtained from recording scheme data.