Spectral analysis at the infrared (IR) spectral range is introduced with assignment of synthetic red-green-blue (RGB) colours defined by adjustable wavelength and bandwidth. The RGB bands were selected at the phase-specific absorbance A or reflectance R bands of olivine and related materials, which can be formed via high temperature annealing (HTA) of natural minerals up to 1500 C. Natural olivines were collected from quarry at volcanic site in Mortlake, Victoria, Australia and spectrally characterised during IR-THz spectroscopy beamtime experiments at Australian Synchrotron. Phase changes in HTA natural olivines were traced by correlation of optical IR 4-polarisation spectroscopy, X-ray energy dispersive spectroscopy and magnetisation. After HTA, olivine samples were magnetized via precipitation of Fe-rich oxides.

Imaging involves the process of recording and reproducing images as close to reality as possible, encompassing both direct and indirect approaches. In direct imaging, the object is directly recorded. Coded aperture imaging (CAI) is an example of indirect imaging, that utilizes optical recording and computational reconstruction to obtain information about an object. Computational reconstruction can be achieved using different linear, nonlinear, iterative, and deep learning algorithms. In this study, we proposed and demonstrated two computational reconstruction algorithms based on the non-linear Lucy-Richardson algorithm (NL-LRA), one for limited support images and another for full-view images based on entropy reduction. The efficacy of these algorithms has been validated through simulations and optical experiments carried out in visible and infrared (IR) light with different coded phase masks. The methods were also tested on a commercial IR microscope with internal GlobarTM and synchrotron sources. The results obtained from the two algorithms were compared with those from their parent methods, and a notable improvement in both entropy and the convergence rate was observed. We believe the developed algorithms will drastically improve image reconstruction in incoherent imaging applications.

In astronomy, multi-object spectrographs employ fibre positioning robots to couple the light from multiple astronomy sources (stars or galaxies) into multiple multi-mode fibres, which are distributed across the focal plane of the telescope. These fibres transport the celestial light to the entrance slit of a spectrograph (or bank of spectrographs) for analysis. For any multi-object system mm-scale opto-mechanical solutions are required to couple the telescope light efficiently into the fibre. We demonstrate a unique micro-optics solution to replace current optical fibre couplers. Specifically, we target technology on board the Keck telescope's FOBOS - Fibre-Optic Broadband Optical Spectrograph - which operates at UV to IR spectral ranges. For spectrally broad UV-IR band operation we use glass and crystals: fused silica, crystalline quartz (transparency 0.16 - 2 micrometers), sapphire Al2O3 (0.2 - 5 micrometers), CaF2 (0.2-7 micrometers), and BaF2 (0.2-10 micrometers). The miniaturised micro-coupler is monolithic, with the entire light path contained within glass or crystal, seamlessly extending to the fibre entrance, which is laser-machined and precisely aligned with the optical axis.

The mid-infrared (MIR) region remains one of the least accessible for realizing holography with spatially incoherent light sources. This work discusses advancements in coded aperture MIR incoherent holography concepts over the past five years.

The reflectance (R) of linear and circular micro-gratings on c-plane sapphire Al2O3 ablated by a femtosecond (fs) laser were spectrally characterised for thermal emission ∝(1−R) in the mid-to-far infrared (IR) spectral range. An IR camera was used to determine the blackbody radiation temperature from laser-patterned regions, which showed (3–6)% larger emissivity dependent on the grating pattern. The azimuthal emission curve closely followed the Lambertian angular profile ∝cosθa at the 7.5–13 μm emission band. The back-side ablation method on transparent substrates was employed to prevent debris formation during energy deposition as it applies a forward pressure of >0.3 GPa to the debris and molten skin layer. The back-side ablation maximises energy deposition at the exit interface where the transition occurs from the high-to-low refractive index. Phononic absorption in the Reststrahlen region 20–30 μm can be tailored with the fs laser inscription of sensor structures/gratings.

Emerging applications of optical technologies are driving the development of miniaturised light sources, which in turn require the fabrication of matching micro-optical elements with sub-1 mm cross-sections and high optical quality. This is particularly challenging for spatially constrained biomedical applications where reduced dimensionality is required, such as endoscopy, optogenetics, or optical implants. Planarisation of a lens by the Fresnel lens approach was adapted for a conical lens (axicon) and was made by direct femtosecond 780 nm/100 fs laser writing in the SZ2080™ polymer with a photo-initiator. Optical characterisation of the positive and negative fraxicons is presented. Numerical modelling of fraxicon optical performance under illumination by incoherent and spatially extended light sources is compared with the ideal case of plane-wave illumination. Considering the potential for rapid replication in soft polymers and resists, this approach holds great promise for the most demanding technological applications.

Axial resolution is one of the most important characteristics of a microscope. In all microscopes, a high axial resolution is desired in order to discriminate information efficiently along the longitudinal direction. However, when studying thick samples that do not contain laterally overlapping information, a low axial resolution is desirable, as information from multiple planes can be recorded simultaneously from a single camera shot instead of plane-by-plane mechanical refocusing. In this study, we increased the focal depth of an infrared microscope non-invasively by introducing a binary axicon fabricated on a barium fluoride substrate close to the sample. Preliminary results of imaging the thick and sparse silk fibers showed an improved focal depth with a slight decrease in lateral resolution and an increase in background noise.

Incoherent holographic imaging technologies, in general, involve multiple optical components for beam splitting—combining and shaping—and in most cases, require an active optical device such as a spatial light modulator (SLM) for generating multiple phase-shifted holograms in time. The above requirements made the realization of holography-based products expensive, heavy, large, and slow. To successfully transfer the holography capabilities discussed in research articles to products, it is necessary to find methods to simplify holography architectures. In this book chapter, two important incoherent holography techniques, namely interference-based Fresnel incoherent correlation holography (FINCH) and interferenceless coded aperture correlation holography (I-COACH), have been successfully simplified in space and time using advanced manufacturing methods and nonlinear reconstruction, respectively. Both techniques have been realized in compact optical architectures using a single static diffractive optical element manufactured using lithography technologies. Randomly multiplexed diffractive lenses were manufactured using electron beam lithography for FINCH. A quasi-random lens and a mask containing a quasi-random array of pinholes were manufactured using electron beam lithography and photolithography, respectively, for I-COACH. In both cases, the compactification has been achieved without sacrificing the performances. The design, fabrication, and experiments of FINCH and I-COACH with static diffractive optical elements are presented in details.

A four-polarisation camera was used to map the absorbance of olivine micro-grains before and after high-temperature annealing (HTA). It is shown that HTA of olivine xenoliths at above 1200 °C in O2 flow makes them magnetised. Different modes of operation of the polariscope with polarisation control before and after the sample in transmission and reflection modes were used. The reflection type was assembled for non-transparent samples of olivine after HTA. The sample for optical observation in transmission was placed on an achromatic, plastic, quarter-wavelength waveplate as a sample holder. Inspection of the sample’s birefringence (retardance), as well as absorbance, was undertaken. The best fit for the transmitted intensity or transmittance T (hence, absorbance A=−log10T) is obtainable using a simple best fit with only three orientations (from the four orientations measured by the camera). When the intensity of transmitted light at one of the orientations is very low due to a cross-polarised condition (polariser–analyser arrangement), the three-point fit can be used. The three-point fit in transmission and reflection modes was validated for T(θ)=Amp×cos(2θ−2θshift)+offset, where the amplitude Amp, offset offset, and orientation azimuth θshift were extracted for each pixel via the best fit.

Silicon-on-insulator (SOI) thin layers provide a platform for the fabrication of devices with all dimensions into nanoscale. Modification of the top silicon layer is done by doping to change the type and degree of conductivity. It is expected that an additional control can be obtained by fs-laser irradiation, tuned at fluences that can induce amorphization or ablation of silicon. Here, we show results of fs-laser irradiation on thin undoped and highly-doped SOI layers, showcasing the capability of this technique to produce various modifications, from heating to ablation. Combined with CMOS-compatible techniques for nanodevice fabrication, this method could become a valuable approach to control doping and patterning of nanoscale Si.

Ultra-short 230 fs laser pulses of a 515 nm wavelength were tightly focused onto 700 nm focal spots and utilised in opening ∼0.4–1 μm holes in alumina Al2O3 etch masks with a 20–50 nm thickness. Such dielectric masks simplify the fabrication of photonic crystal (PhC) light-trapping patterns for the above-Lambertian performance of high-efficiency solar cells. The conditions of the laser ablation of transparent etch masks and the effects sub-surface Si modifications were revealed by plasma etching, numerical modelling, and minority carrier lifetime measurements. Mask-less patterning of Si is proposed using fs laser direct writing for dry plasma etching of Si.

Herein, we give an overview of several less explored structural and optical characterization techniques useful for biomaterials. New insights into the structure of natural fibers such as spider silk can be gained with minimal sample preparation. Electromagnetic radiation (EMR) over a broad range of wavelengths (from X-ray to THz) provides information of the structure of the material at correspondingly different length scales (nm-to-mm). When the sample features, such as the alignment of certain fibers, cannot be characterized optically, polarization analysis of the optical images can provide further information on feature alignment. The 3D complexity of biological samples necessitates that there be feature measurements and characterization over a large range of length scales. We discuss the issue of characterizing complex shapes by analysis of the link between the color and structure of spider scales and silk. For example, it is shown that the green-blue color of a spider scale is dominated by the chitin slab’s Fabry–Pérot-type reflectivity rather than the surface nanostructure. The use of a chromaticity plot simplifies complex spectra and enables quantification of the apparent colors. All the experimental data presented herein are used to support the discussion on the structure–color link in the characterization of materials.

Manufacturing diffractive lenses with a high numerical aperture (NA) is often a challenging task. The challenge stems from the fundamental limit of lithography techniques and the diffraction limit. Photolithography and femtosecond ablation are some of the well-established rapid lithography techniques for manufacturing large-area diffractive lenses for the visible region. First, when high NA diffractive lenses are designed, the outermost width of the zone becomes a sub-lithography limit (~ 2 μm) while still being super-wavelength. In advanced photolithography and most femtosecond ablation methods, the lithography limit is sub-wavelength, but scalar diffraction is not applicable, and the device becomes polarization sensitive. In this study, a holographic solution to overcome the above limitations is proposed. Fresnel incoherent correlation holography (FINCH) is a super-resolution incoherent imaging technique. In this project, a FINCH-inspired optical configuration is proposed to image beyond the lithography and diffraction limit of the diffractive lens. In a regular imaging system, the light from an object is collected by a diffractive lens and imaged, and recorded by an image sensor in the image plane. In this work, the intensity distribution is not recorded at the image plane but at a plane where the light modulated by the diffractive lens interferes with the unmodulated light outside the diffractive lens. This intensity distribution has spatial frequencies beyond the limit of the NA of the diffractive lens, resulting in super-resolution. Using the newly developed Lucy-Richardson-Rosen algorithm (LR2A), the image is reconstructed. We believe that the developed technique will improve the performance of imaging systems based on high-NA diffractive lenses.

A two-directional ferroelastic deformation in organic crystals is unprecedented owing to its anisotropic crystal packing, in contrast to isotropic symmetrical packing in inorganic compounds and polymers. Thereby, finding and constructing multidirectional ferroelastic deformations in organic compounds is undoubtedly complex and at once calls for deep comprehension. Herein, we demonstrate the first example of a two-directional ferroelastic deformation with a unique scissor-like movement in single crystals of trans-3-hexenedioic acid by the application of uniaxial compression stress. A detailed structural investigation of the mechanical deformation at the macroscopic and microscopic levels by three distinct force measurement techniques (including shear and three-point bending test), single crystal X-ray diffraction techniques, and polarized synchrotron-FTIR microspectroscopy highlighted that mechanical twinning promoted the deformation. The presence of two crystallographically equivalent faces and the herringbone arrangement promoted the two-directional ferroelastic deformation. In addition, anisotropic heat transfer properties in the parent and the deformed domains were investigated by thermal diffusivity measurement on all three axes using microscale temperature-wave analysis (μ-TWA). A correlation between the anisotropic structural arrangement and the difference in thermal diffusivity and mechanical behavior in the two-directional organoferroelastic deformation could be established. The structural and molecular level information from this two-directional ferroelastic deformation would lead to a more profound understanding of the structure-property relationship in multidirectional deformation in organic crystals.

In this perspective, we give an overview of several less explored structural and optical characterisation techniques useful for biomaterials. New insights into the structure of natural fibres such as spider silk can be gained with minimal sample preparation. Electromagnetic radiation (EMR) over a broad range of wavelengths (from X-ray to THz) provides information of the structure of the material at cor- respondingly different length scales (nm-to-mm). When the sample features, such as the alignment of certain fibres, cannot be characterised optically, polarisation analysis of the optical images can provide further information on feature alignment. The 3D complexity of biological samples necessitates that there be feature measure- ments and characterisation over a large range of length scales. We discuss the issue of characterising complex shapes by analysis of the link between the color and struc- ture of spider scales and silk. For example, it is shown that the green-blue color of a spider scale is dominated by the chitin slab’s Fabry-P ́erot type reflectivity rather than the surface nanostructure. The use of a chromaticity plot simplifies complex spectra and enables quantification of the apparent colors. All the experimental data presented herein are used to support the discussion on the structure-color link in the characterisation of materials.

The near infrared (NIR) part of the infrared synchrotron beam is usually dumped to improve the signal to noise ratio of spectral imaging. In this study, this NIR synchrotron beam has been extracted and used for three-dimensional (3D) phase imaging. A pinhole was inserted in the path of the fork shaped NIR synchrotron beam and the Airy diffraction pattern was aligned with biochemical samples and the diffracted intensity distribution was captured using an image sensor sensitive to NIR. A phase retrieval algorithm was used to estimate the 3D phase distribution at the object plane from the recorded intensity distribution.