On-surface synthesis is a powerful tool for engineering two-dimensional (2D) organic nanostructures by controlling intermolecular interactions between the building blocks. Herein, we explore the role of Cl adatoms in the synthesis and characterization of self-assembled 1,3,5-tris[4-(pyridin)-[1,1'-biphenyl]benzene (TPyPPB) networks on Ag(111), by combining scanning tunneling microscopy (STM), X-ray photoelectron spectroscopy (XPS), and density functional theory (DFT). In the absence of Cl, upon deposition at room temperature (RT), TPyPPB molecules form a highly ordered porous supramolecular network with triangular packing, stabilized by hydrogen bonds (N--H). In the presence of Cl adatoms, sublimated onto the surface using dichloro-(1,10phenanthrolin)-platin(II) (Cl2PhPt) a second molecular precursor, we observe a so-called mixed phase or inverted packing, depending on the applied growth procedure. The mixed phase is characterized by a nonperiodic structure stabilized by intermolecular interactions between TPyPPB, Cl2PhPt, and Cl. In contrast, when only Cl adatoms and TPyPPB are present on the Ag(111) surface, a non-porous supramolecular arrangement is obtained, stabilized by C-H--Cl hydrogen bonds.

We have investigated the adsorption and self-metalation of free-base tetraphenyltransdibenzoporphyrin (2H-TPtdBP) on Cu(111) as a function of coverage and temperature using scanning tunneling microscopy, x-ray photoelectron spectroscopy, temperature programmed desorption, and density-functional theory calculations. At low coverages (<0.16 molecules nm-2), we observe isolated individual molecules with an inverted conformation and no self-metalation up to 363 K. At higher coverages, both the formation of ordered islands and self-metalation are observed over time already at room temperature, and accelerate upon heating to 363 K. At 423 K, complete self-metalation occurs for all coverages up to the completed first layer. By comparing our results for 2H-TPtdBP to the existing literature on other tetraphenyl-based porphyrins, we demonstrate how adsorption and self-metalation can be tailored by the choice of substituents.

Azobenzene derivatives, an important class of molecular switches that undergo isomerization between trans and cis states, have been studied on various coinage metal surfaces in the past. However, on reactive copper surfaces switching turned out to be difficult. Here, we show that the use of bulky 2,6-dimethylphenyl side groups enables switching on a Cu(111) surface as studied by scanning tunneling microscopy. By applying voltage pulses from the STM tip, irreversible trans → cis isomerization of individual molecules can be induced where exactly one molecule within each unit cell is isomerized. The absence of backward cis → trans switching illustrates the importance of the adsorption structure on the potential energy landscape of azobenzene. Isomerization, which is activated by inelastic scattering of single tunneling electrons, happens in a very localized fashion, thus allowing to ‘write’ patterns of individual cis isomers into the homogeneous molecular layer. Our study demonstrates how the bulky spacer groups direct adsorption and self-assembly into close-packed structures, which are similar to three-dimensional molecular crystals, on the surface. In addition, they modulate the electronic coupling to the underlying substrate to maintain successful switching behavior even on the most reactive coinage metal surfaces.

Large domains of two-dimensional supramolecular porous nanostructures are interesting for various applications from electronics to biology. Here, we investigate the formation of Cu-coordinated networks on Cu(111) using scanning tunneling microscopy and density functional theory (DFT). We consider two molecules with three pyridyl end groups connected to a central benzene ring by either one or two phenyl groups, namely 1,3,5-tris[4-(pyridin)phenyl]benzene (TPyPB) and 1,3,5-tris[4-(pyridin)-[1,1’-biphenyl]benzene (TPyPPB), respectively. Upon deposition of TPyPB at room temperature, a honeycomb nanostructure forms, which is stabilized by Cu adatoms, as previously seen. Upon deposition at 400 K, the growth dynamics change, and molecules become trapped in the hexagonal pores. In contrast, deposition of TPyPPB at room temperature leads to vitreous structures, which rearrange at 400 K forming a low-defect and extended ordered honeycomb phase, which is also stabilized only in the presence of Cu adatoms. The DFT calculations for both honeycomb phases show an impressive agreement with the experimental results, considering the size of such structures. After annealing at 420 K, a complex flower-like structure composed of a mix of two- and three-fold coordinated Cu centers emerges. Further annealing to above 420 K leads to another new phase composed of a high molecular density motif, the so-called diamond phase.

In the context of ionic liquid (IL)-assisted catalysis, we have investigated the adsorption and thermal evolution of the IL 1,3-dimethylimidazolium bis(trifluoromethylsulfonyl)imide ([C1C1Im][Tf2N]) on Pt(111) between 100 and 800 K by angle-resolved X-ray photoelectron spectroscopy and scanning tunneling microscopy. Defined amounts of IL in the coverage range of a complete first wetting layer were deposited at low temperature (100-200 K), and subsequently heated to 300 K, or directly at 300 K. At 100 K, the IL adsorbs as an intact disordered layer. Upon heating to 200 K, the IL stays intact, but forms an ordered and well-oriented structure. Upon heating to 250 K, the surface order increases, but at the same time STM and XPS indicate the onset of decomposition. Upon heating to 300 K, decomposition progresses, such that 50-60% of the IL is decomposed. The anion-related reaction products desorb instantaneously, and the cation-related products remain on the surface. Thereby, the surface is partly passivated, enabling the remaining IL to still be adsorbed intact at 300 K. For IL deposition directly at 300 K, a fraction of the IL instantaneously decomposes, with the anion-related products desorbing, opening free space for further deposition of IL. Hence, cation-related species accumulate at the expense of anions, until one fully closed wetting layer is formed. As a consequence, a higher dose is required to reach this coverage at 300 K, compared to 100-200 K.

We have studied 22-oxahemiporphycene molecules by a combination of scanning tunneling microscopy at low temperatures and density functional theory calculations. In contrast to other molecular switches with typically two switching states, these molecules can in principle exist in three different tautomers, due to their asymmetry and three inequivalent binding positions of a hydrogen atom in their macrocycle. Different tautomers are identified from the typical appearance on the surface and tunneling electrons can be used to tautomerize single molecules in a controllable way with the highest rates if the STM tip is placed close to the hydrogen binding positions in the cavity. Characteristic switching processes are explained by the different energy pathways upon adsorption on the surface. Upon applying higher bias voltages, deprotonation occurs instead of tautomerization, which becomes evident in the molecular appearance.

We studied the adsorption and reaction behavior of the ionic liquid (IL) 1,3-dimethylimidazolium bis[(trifluoromethyl)sulfonyl]imide ([C 1 C 1 Im][Tf 2 N]) on Cu(111) using non-contact atomic force microscopy (nc-AFM), scanning tunneling microscopy (STM), and angle-resolved X-ray photoelectron spectroscopy (ARXPS) in ultrahigh vacuum as a function of temperature, supported by density-functional theory (DFT) calculations. Our nc-AFM results for sub-monolayer IL films show that at 200 K, the IL self-assembles into highly ordered islands, with cations and anions arranged next to each other in a checkerboard–type phase. After extended annealing at 300 K, the structure transforms first to a hexagonal phase and then to a porous honeycomb phase. Simultaneously, many small, disordered islands are formed. Complementary ARXPS reveals no IL desorption until 300 K. However, a significant fraction of the IL is converted to a new species as deduced from new, strongly shifted peaks that develop in the XP spectra at around 275 K and grow with annealing time at 300 K. We correlate the remaining unshifted peaks to the ordered phases observed in nc-AFM and the shifted peaks to decomposition products, which appear as disordered islands in nc-AFM and STM. Upon further heating to 360 K, about 50% of the anions or their decomposition products desorb from the surface, while cation-related fragments mostly remain on the surface. From DFT, we obtain additional information on the structure of the ordered phases and the interaction of the IL with the substrate.

We address the adsorption of 2H-tetranaphthylporphyrin (2HTNP) and 2H-tetranaphthylbenzoporphyrin (2HTNBP) on Cu(111) and Ag(111). The difference between the two molecules is that for 2HTNBP the pyrrole groups are replaced by isoindole groups. We were interested in the resulting differences in the adsorption behavior on the two surfaces, in particular the role of the naphthyl groups. The investigations are performed with scanning tunneling microscopy at room temperature (RT) and after heating treatments (500 and 600 K). On Ag (111), 2HTNP forms a commensurable superstructure at RT, which transforms to a denser packed, noncommensurable structure upon annealing. For 2HTNBP, individual molecules are observed on Cu(111) at RT, which exhibit different mobility. In contrast, on Ag(111) the formation of ordered 2HTNBP islands occurs, which are stabilized by T-type interactions. After heating to 500 K, these islands undergo a structural change to a denser packed structure, which is stabilized by 7C-7C stacking of neighboring naphthyl groups.

We deposited defined amounts of [C1C1Im][Tf2N] on Au(111) at different temperatures and investigated the morphology and wetting behavior of the deposited films by atomic force microscopy. For multilayer coverages, we observe a drastically different growth behavior when comparing deposition at room temperature (RT) and deposition below 170 K followed by slow annealing to RT. Upon deposition at RT, we find the formation of 2–30 nm high and 50–500 nm wide metastable 3D droplets on top of a checkerboard-type wetting layer. These droplets spread out into stable 2D bilayers, on the time scale of hours and days. The same 2D bilayer structure is obtained after deposition below 170 K and slow annealing to RT. We present a statistical analysis on the time-dependent changes of the shape and volume of the 3D droplets and the 2D bilayers. We attribute the stabilization of the 2D bilayers on the wetting layer and on already formed bilayers to the high degree of order in these layers. Notably, the transformation process from the 3D droplets to 2D bilayer islands is accelerated by tip effects and also X-ray radiation.

The covalent coupling of porphine molecules on Au(111) is studied by scanning probe microscopy experiments and density functional theory. At sufficient temperatures, dehydrogenative C–C coupling of the unfunctionalized molecules occurs directly on the surface. Characteristic dimer structures between individual porphine molecules are observed and assigned to various binding motifs that are distinguished by specific intermolecular connections. Different preparations show that the relative abundance of these motifs depends on the temperature of the gold sample during deposition and is explained by calculated free energies and kinetic aspects that are relevant during the linking process. Observations on the gold terraces are completed by studying polymerization at step edges, giving insight into their role during the covalent linking process.

Prototypical molecular switches such as azobenzenes exhibit two states, i.e., trans and cis, with different characteristic physical properties. In recent years various derivatives were investigated on metallic surfaces. However, bulk insulators as supporting substrate reveal important advantages since they allow electronic decoupling from the environment, which is key to control the switching properties. Here, we report on the light-induced isomerization of an azobenzene derivative on a bulk insulator surface, in this case calcite (101̅4), studied by atomic force microscopy with submolecular resolution. Surprisingly, cis isomers appear on the surface already directly after preparation, indicating kinetic trapping. The photoisomerization process is reversible, as the use of different light sources results in specific molecular assemblies of each isomer. The process turns out to be very efficient and even comparable to molecules in solution, which we assign to the rather weak molecular interaction with the insulator surface, in contrast to metals.

We have studied the local structure of ultrathin ZnO layers grown on Ag(111) by the reactive deposition method using low-temperature scanning tunneling microscopy (STM) and noncontact atomic force microscopy (nc-AFM) at 5 K. The characteristic Moire patterns arising from the lattice mismatch between the ZnO(0001) layers and Ag(111) appear in STM, but it is not pronounced in nc-AFM images. This indicates an atomically flat geometrical structure of the ZnO layer and a dominant contribution of the electronic state to the Moire patterns imaged by STM. We found that the apparent height of STM for the ZnO layers strongly depends on the bias voltage and becomes comparable with that of nc-AFM when the bias voltage is below the conduction band edge of the ZnO layers. The ZnO layers with the STM (AFM) apparent height of 3.8 (4.0) +/- 0.3 and 5.8 (6.1) +/- 0.3 angstrom were observed. On the other hand, mapping the onset of the resonance state of the ZnO layer by scanning tunneling spectroscopy provides a basis for determining its thickness. Our results suggest that the ZnO layers on Ag(111) grow predominantly as bi- and trilayers under the conditions used.

This paper presents a novel method for preparing aromatic, mixed self-assembled monolayers (SAMs) with a dilute surface fraction coverage of protonated amine via in situ hydrolysis of C═N double bond on gold surface. Two imine compounds, (4'-(4-(trifluoromethyl)benzylideneamino)biphenyl-4-yl)methanethiol (CF(3)-C(6)H(4)-CH═N-C(6)H(4)-C(6)H(4)-CH(2)-SH, TFBABPMT) and (4'-(4-cyanobenzylideneamino)biphenyl-4-yl)methanethiol (CN-C(6)H(4)-CH═N-C(6)H(4)-C(6)H(4)-CH(2)-SH, CBABPMT), self-assembled on Au(111) to form highly ordered monolayers, which was demonstrated by infrared reflection absorption spectroscopy (IRRAS) and X-ray photoelectron spectroscopy (XPS). A nearly upright molecular orientation for CF(3)- and CN-terminated SAM was detected by near edge X-ray absorption fine structure (NEXAFS) measurements. Afterward, the acidic catalyzed hydrolysis was carried out in chloroform or an aqueous solution of acetic acid (pH = 3). Systematic studies of this hydrolysis process for CN-terminated SAM in acetic acid at 25 °C were performed by NEXAFS measurements. It was found that about 30% of the imine double bonds gradually cleaved in the first 40 min. Subsequently, a larger hydrolysis rate was observed due to the freer penetration of acetic acid in the SAM and resultant more open molecular packing. Furthermore, the molecular orientation in mixed SAMs did not change during the whole hydrolysis process. This partially hydrolyzed surface contains a controlled amount of free amines/ammonium ions which can be used for further chemical modifications.