An important factor for controlling the chemical signature of surface water is the interactions with soil particles and groundwater. In permafrost landscapes, ground ice restricts groundwater flow, which implies a limited influence of processes such as weathering on the chemical signature of the runoff. The aim of this study was to examine how freeze-thaw processes, hydrology and water age interact to shape the chemical and stable hydrogen and oxygen isotopic signature of surface water in a catchment in West Greenland. Measuring runoff in remote catchments is challenging, and therefore we used a validated hydrological model to estimate daily runoff over multiple years. We also applied a particle tracking simulation to determine groundwater ages and used data on stable isotopic and chemical composition from various water types - including surface water, groundwater, lake water and precipitation - spanning from early snowmelt to the end of the thawed season. Our results show that groundwater age generally is less than one year and rarely exceeds four years, total runoff is dominated by groundwater, and overland flow is restricted to the snowmelt period and after heavy rain events. Monitoring of thaw rates in the active layer indicates a rapid thawing in connection with running water, and meltwater from ground ice quickly becomes an important fraction of the runoff. Taken together, our data suggest that even in continuous permafrost landscapes with thin active layers and an absence of truly old and mobile groundwater, soil processes exert a strong influence on the chemical and stable isotopic signature of runoff, i.e., similar to what has been observed in other climatic settings.

Ecosystems are continuously responding to both natural and anthropogenic environmental change. Lake sediments preserve local and global evidence of these ecological transitions through time. This archived information can yield crucial insights through the reconstruction of past changes over hundreds to many thousands of years. This chapter provides an overview on what lake sedimentary DNA (sedDNA) is, which biological groups can be detected with this novel paleoecological proxy, and the workflow and analytical techniques currently employed in sedDNA research. Finally, the implications of lake sedDNA studies are illustrated through five topics, illustrating how sedDNA can reconstruct lake response to environmental change.

The analysis of environmental DNA (eDNA) from sediments has become an important method to study past ecosystem dynamics, offering new perspectives for paleoecological research. Yet, the temporal and spatial variability in DNA sources and transport pathways to the sediment remain underexplored. We studied how the plant DNA signal varies between annual lamina (or varves) in the sediment from Nylandssjön, a small boreal lake in northern Sweden, between 1991 and 2020. During this time period the vegetation community composition in the catchment was stable without any known drastic changes between years. Hence, observed differences in the eDNA signal between varves (years) will be related to differences in DNA transport and preservation.We find that the overall vegetation community structure is similar between varves (years), emphasizing the robustness of eDNA for whole-ecosystem analyses. However, both the number of taxa and genera varies considerably between varves, suggesting that there is significant between-year difference in the source area, transport, and/or preservation of DNA in the sediment. This implies that records of individual taxa – particularly more rare taxa – need to be interpreted with caution. Interestingly, some individual taxa have strong between-varve (year) fluctuations in absolute reads, suggesting differences in the transport and deposition of plant fragments could play an important role in forming the DNA signal. Our results highlight that we need a better understanding of the variability in transport pathways and deposition of DNA from the lake catchment to the sediments in order to reliably interpret eDNA signals in sediment records.

Global estimates of methane (CH 4 ) emissions from lakes to the atmosphere rely on understanding CH 4 processes at the sediment‐water interface (SWI). However, in the Arctic, the variability, magnitude, and environmental drivers of CH 4 production and flux across the SWI are poorly understood. Here, we estimate CH 4 diffusive fluxes from the sediment into the water column in 10 lakes in Arctic Scandinavia and Svalbard using porewater modeling and mass transfer estimates, which we then compare with 60 published estimates from the Arctic to the tropics. Diffusion of CH 4 in the sampled lake sediments ranged from −0.46 to 3.1 mmol m −2 day −1 , which is consistent with previous reports for Arctic and boreal lakes, and lower than for temperate and tropical biomes. Methane production occurs primarily within the top ∼10 cm of sediment, indicating a biogenic origin. Random forest predictive modeling of the sampled lakes revealed that conditions promoting production and deposition of autochthonous organic carbon in Arctic lakes drive CH 4 diffusion into the water column by fueling sediment CH 4 production. For small lakes across biomes, determinants of the estimated CH 4 flux were also best captured by climate predictors, with warmer and wetter conditions favoring ecosystem productivity and enhancing flux but also lake morphometry resulting in important regional variability in estimates. Our study emphasizes the importance of quantifying diffusive CH 4 fluxes from sediments in diverse lake types to account for differences in the controls on primary production and the preservation of organic carbon across and within different biomes, to refine CH 4 emission estimates in a warming climate.

The climate in southern Patagonia is heavily influenced by the Southern Westerly Winds (SWW). Therefore, climate reconstructions from this region are valuable for our understanding of the temporal dynamics in the atmospheric circulation of the Southern Hemisphere. In this study a sedimentary record from the shallow lake Laguna Amalia – located in the semiarid Fuegian steppe of Tierra del Fuego (53°S) – was used to study how the hydroclimate in this region has changed over the last ~7100 years. Our interpretations rely on a combination of pollen, diatoms, total organic carbon, carbonates, lithology and sediment accumulation rate, together with geomorphological features of the landscape. We conclude that before 6700 cal BP Laguna Amalia was a permanent water body. Around 6700 cal BP the climate becomes drier in response to stronger SWW, and from around 6000 cal BP the lake entered a semi-permanent state with variable salinity and prolonged drier periods. Between 3000 and 600 cal BP Laguna Amalia becomes a more permanent freshwater lake with only shorter periods with desiccation. For the last 600 years the climate has again become drier, and the lake is currently experiencing seasonal desiccation. These hydroclimatic changes can largely be attributed to the variable influence of the SWW, with weaker SWW allowing the advection of moist air masses from the east into northern Tierra del Fuego.

Organic carbon (OC) burial rates in northern lakes are estimated to have increased by 2–3 fold over the past 150 years. However, assessing OC burial efficiency is challenging because (a) long‐term (decadal) process are difficult to study in situ, and (b) sediment organic matter (OM) consists of thousands of different compounds from both terrestrial and aquatic sources, which are subject to different degrees of degradation, transformation, or preservation. Here, we used pyrolysis–gas chromatography/mass spectrometry to track changes in the organic molecular composition of individual varve years in a series of sediment freeze cores collected during 1979–2010, allowing us to assess diagenetic changes over ≤31 years (or 12.5 cm depth). As predicted from previous work, the greatest losses over time/depth (18–19 years; 8.5 cm) are for compounds indicative of fresh OM, both terrestrial (e.g., levosugars with 58%–77% lost) and particularly aquatic origin (e.g., phytadiene and phytene amongst chlorophylls with 40%–82% lost). This high variability in degradation of specific compounds has implications for interpreting past changes in C and N. Although OM composition changes only slightly beyond 20 years (8.5 cm), the chlorophyll:lignin ratio (fresh vs. degraded compounds) continues to decline to 31 years (12.5 cm) and is predicted to continue up to 100 years (37 cm depth). In most northern lakes, indications of OM degradation to these depths correspond to sediment ages of 50 to >150 years, suggesting that much of the recent increase in OC burial in northern lakes does not represent permanent sequestration of C.

There is an increased awareness that the biogeochemical cycling at high latitudes will be affected by a changing climate. However, because biogeochemical studies most often focus on a limited number of elements (i.e., C, P and N) we lack baseline conditions for many elements. In this work, we present a 42-element mass-balance budget for lake dominated catchment in West Greenland. By combining site specific concentration data from various catchment compartments (precipitation, active layer soils, groundwater, permafrost, lake water, lake sediments and biota) with catchment geometries and hydrological fluxes from a distributed hydrological model we have assessed present-day mobilization, transport and accumulation of a whole suite of elements with different biogeochemical behavior. Our study shows that, under the cold and dry conditions that prevails close to the inland ice-sheet: i) eolian processes are important for the transport of elements associated with mineral particles (e.g., Al, Ti, Si), and that these elements tend to accumulate in the lake sediment, ii) that even if weathering rates are slowed down by the dry and cold climate, weathering in terrestrial soils is an important source for many elements (e.g., lanthanides), iii) that the cold and dry conditions results in an accumulation of elements supplied by wet deposition (e.g., halogens) in both terrestrial soils and the lake-water column, and iv) that lead and sulfur from legacy pollution are currently being released from the terrestrial system. All these processes are affected by the climate, and we can therefore expect that the cycling of the majority of the 42 studied elements will change in the future. However, it is not always possible to predict the direction of this change, which shows that more multi-element biogeochemical studies are needed to increase our understanding of the consequences of a changing climate for the Arctic environment.

On the annual and interannual scales, lake microbial communities are known to be heavily influenced by environmental conditions both in the lake and in its terrestrial surroundings. However, the influence of landscape setting and environmental change on shaping these communities over a longer (millennial) timescale is rarely studied. Here, we applied an 18S metabarcoding approach to DNA preserved in Holocene sediment records from two pairs of co-located Swedish mountain lakes. Our data revealed that the microbial eukaryotic communities were strongly influenced by catchment characteristics rather than location. More precisely, the microbial communities from the two bedrock lakes were largely dominated by unclassified Alveolata, while the peatland lakes showed a more diverse microbial community, with Ciliophora, Chlorophyta and Chytrids among the more predominant groups. Furthermore, for the two bedrock-dominated lakes—where the oldest DNA samples are dated to only a few hundred years after the lake formation—certain Alveolata, Chlorophytes, Stramenopiles and Rhizaria taxa were found prevalent throughout all the sediment profiles. Our work highlights the importance of species sorting due to landscape setting and the persistence of microbial eukaryotic diversity over millennial timescales in shaping modern lake microbial communities.

The use of lake sedimentary DNA to track the long-term changes in both terrestrial and aquatic biota is a rapidly advancing field in paleoecological research. Although largely applied nowadays, knowledge gaps remain in this field and there is therefore still research to be conducted to ensure the reliability of the sedimentary DNA signal. Building on the most recent literature and seven original case studies, we synthesize the state-of-the-art analytical procedures for effective sampling, extraction, amplification, quantification and/or generation of DNA inventories from sedimentary ancient DNA (sedaDNA) via high-throughput sequencing technologies. We provide recommendations based on current knowledge and best practises.

We present a high-resolution peat paleodust and accumulation rate record spanning the last 8300 years from Draftinge Mosse (400 ha), southern Sweden (57 degrees 06'27.6 '' N 13 degrees 42'54.1 '' E). The record was analysed for peat accumulation rates (PAR), elemental concentrations, mineralogy, and plant macrofossil content. Five periods of increased mineral deposition were recorded. The first event occurred between similar to 6280 and similar to 5570 cal BP, during the fen to bog transition. This is followed by four atmospheric mineral dust events (DE) which were recorded in the ombrotrophic section of the sequence at (cal BP): similar to 2200; similar to 1385-1150; similar to 830-590, and from similar to 420 to the present. Statistical analysis and elemental ratios indicated that both the mineralogy and grain size shifted when the system transitioned from fen into bog, showing that the governing transport process shifted with the peat-land succession stages. This highlights the importance of identifying peatland succession stages within peat paleodust studies. Following all four DE, increases in PAR were observed, implying a coupling to dust deposition. Comparison of DE and PAR with a paleodust record from Store Mosse, a 20 times larger bog located ca 18 km away (Kylander et al. 2016), showed that both PAR and dust deposition are largely represented by single-core reconstructions, indicating that they are driven by a common climate forcing mechanism. However, higher PAR and dust deposition rates were observed in the more moderately sized Draftinge Mosse, suggesting that the size of the bog is important to consider in peat paleodust studies. Furthermore, the smaller bog responded more rapidly to hydrological changes, indicating that the size of the bog affects its' buffering capacity. Authigenic carbonates, observed here during episodes of rapid peat growth, coincide with changes in REE ratios, indicating that authigenic peat processes potentially cause REE fractionation.

Chlorophyll is frequently used as a proxy for autochthonous production in lakes. This use of chlorophyll concentrations in sediments to infer historical changes in lake primary production relies heavily on the assumption that preservation is sufficient to reflect the productivity in a meaningful way. In this study, we use a series of freeze cores from a lake with annually laminated sediments to assess how reliable down-core trends in chlorophyll are, and to what extent chlorophyll is degraded in the sediment. A striking consistency in the down-core chlorophyll trends in four sediment cores collected in different years (1983, 1992, 2002 and 2010) shows that the sediment preserves a consistent chlorophyll signal over longer timescales. However, there are also clear signs that diagenetic processes within the sediment affect the chlorophyll concentration in sediment layers younger than 10–15 years. This implies that care is needed when interpreting chlorophyll trends in recent sediments. Further, our data show that high-performance liquid chromatography (HPLC) and visible reflectance spectroscopy (VRS) detect similar chlorophyll concentrations for recently dried samples. A third analytical technique, pyrolysis–gas chromatography/mass spectrometry, which provides semi-quantitative values for chlorophyll, also produce a temporal trend that is highly correlated with data from the two quantitative techniques. For samples that have been stored dried at room temperature for several years there is, however, a large discrepancy between the two quantitative techniques. The VRS method is more robust with regards to degradation during storage, while HPLC results demonstrate clear storage effects.

Severe winter windstorms have become an increasingly common occurrence over recent decades in northwestern Europe. Although there exists considerable uncertainty, storminess is projected to increase in the future. On centennial to millennial time scales in particular, the mechanisms forcing storminess remain unsettled. We contribute to available palaeostorm records by reconstructing changes over the last 6670 years using a coastal peat sequence retrieved from the ombrotrophic Laphroaig bog on Islay, southwestern Scotland. We use a combination of ash content, grain size and elemental chemistry to identify periods of greater storminess, which are dated to 6605, 6290–6225, 5315–5085, 4505, 3900–3635, 3310–3130, 2920–2380, 2275–2190, 2005–1860, 1305–1090, 805–435 and 275 cal. a BP. Storm signals in the first half of the record up to ~3000 cal. a BP are mainly apparent in the grain‐size changes. Samples from this time period also have a different elemental signature than those later in the record. We speculate that this is due to receding sea levels and the consequent establishment of a new sand source in the form of dunes, which are still present today. The most significant events and strongest winds are found during the Iron Ages Cold Epoch (2645 cal. a BP), the transition into, and in the middle of, the Roman Ages Warm Period (2235 and 1965 cal. a BP) and early in the Little Ice Age (545 cal. a BP). The Laphroaig record generally agrees with regionally relevant peat palaeostorm records from Wales and the Outer Hebrides, although the relative importance of the different storm periods is not the same. In general, stormier periods are coeval with cold periods in the region as evidenced by parallels with increased ice‐rafted debris in the North Atlantic, highlighting that sea‐ice conditions could impact future storminess and storm track position.

The history of mining and smelting and the associated pollution have been documented using lake sediments for decades, but the broader ecological implications are not well studied. We analyzed sediment profiles covering the past ~10,000 years from three lakes associated with an iron blast furnace in central Sweden, as an example of the many small-scale furnaces with historical roots in the medieval period. With a focus on long-term lake-water quality, we analyzed multiple proxies including geochemistry, pollen and charcoal, diatom composition and inferred pH, biogenic silica (bSi), visible near-infrared spectroscopy (VNIRS)-inferred lake-water total organic carbon (LW-TOC), and VNIRS-inferred sediment chlorophyll (sed-Chl). All three lakes had stable conditions during the middle Holocene (~5000 BCE to 1110 CE) typical of oligo-dystrophic lakes: pH 5.4–5.6, LW-TOC 15–18 mg L−1. The most important diatom taxa include, for example, Aulacoseira scalaris, Brachysira neoexilis, and Frustulia saxonica. From ~1150 CE, decreases in LW-TOC, bSi, and sed-Chl in all three lakes coincide with a suite of proxies indicating disturbance associated with local, small-scale agriculture, and the more widespread use of the landscape in the past (e.g. forest grazing, charcoal production). Most important was a decline in LW-TOC by 30–50% in the three lakes prior to the 20th century. In addition, the one lake (Fickeln) downstream of the smelter and main areas of cultivation experienced a shift in diatom composition (mainly increasing Asterionella formosa) and a 0.6 pH increase coinciding with increasing cereal pollen and signs of blast furnace activity. The pH did not change in the other two lakes in response to disturbance; however, these lakes show a slight increase (0.3–0.5 pH units) because of modern liming. LW-TOC has returned to background levels in the downstream lake and remains lower in the other two.

Climate change is predicted to have far reaching consequences for the mobility of carbon in arctic landscapes. On a regional scale, carbon cycling is highly dependent on interactions between terrestrial and aquatic parts of a catchment. Despite this, studies that integrate the terrestrial and aquatic systems and study entire catchments using site-specific data are rare. In this work, we use data partly published by Lindborg et al. (2016a) to calculate a whole-catchment carbon mass-balance budget for a periglacial catchment in West Greenland. Our budget shows that terrestrial net primary production is the main input of carbon (99% of input), and that most carbon leaves the system through soil respiration (90% of total export/storage). The largest carbon pools are active layer soils (53% of total carbon stock or 13 kg C m (2)), permafrost soils (30% of total carbon stock or 7.6 kg C m (2)) and lake sediments (13% of total carbon stock or 10 kg C m (2)). Hydrological transport of carbon from the terrestrial to aquatic system is lower than in wetter climates, but the annual input of 4100 kg C yr (1) (or 3.5 g C m (2) yr (1)) that enters the lake via runoff is still three times larger than the eolian input of terrestrial carbon. Due to the dry conditions, the hydrological export of carbon from the catchment is limited (5% of aquatic export/storage or 0.1% of total export/storage). Instead, CO2 evasion from the lake surface and sediment burial accounts for 57% and 38% of aquatic export/storage, respectively (or 0.8% and 0.5% of total export/storage), and Two-Boat Lake acts as a net source of carbon to the atmosphere. The limited export of carbon to downstream water bodies make our study system different from wetter arctic environments, where hydrological transport is an important export pathway for carbon. (C) 2019 The Author(s). Published by Elsevier B.V.

To assess the sensitivity of lakes to anthropogenically-driven environmental changes (e.g., nutrient supply, climate change), it is necessary to first isolate the effects of between-year variability in weather conditions. This variability can strongly impact a lake's biological community especially in boreal and arctic areas where snow phenology play an important role in controlling the input of terrestrial matter to the lake. Identifying the importance of this inherent variability is difficult without time series that span at least several decades. Here, we applied a molecular approach (metabarcoding on eukaryotic 18S rRNA genes and qPCR on cyanobacterial 16S rRNA genes) to sedimentary DNA (sed-DNA) to unravel the annual variability of microbial community in 40 years' sediment record from the boreal lake Nylandssjon which preserve annually-laminated sediments. Our comparison between seasonal meteorological data, sediment inorganic geochemistry (X-ray fluorescence analyses) and organic biomarkers (pyrolysis-gas chromatography/mass spectrometry analyses), demonstrated that inter-annual variability strongly influence the sediment composition in Nylandssjon. Spring temperature, snow and ice phenology (e.g., the percentage of snow loss in spring, the timing of lake ice-off) were identified as important drivers for the inputs of terrestrial material to the lake, and were therefore also important for shaping the aquatic biological community. Main changes were detected in the late-80s/mid-90s and mid-2000s associated with increases in algal productivity, in total richness of the protistan community and in relative abundances of Chlorophyta, Dinophyceae as well as Cyanobacteria abundance. These changes could be linked to a decline in terrestrial inputs to the lake during the snow melt and run-off period, which in turn was driven by warmer winter temperatures. Even if our data shows that meteorological factors do affect the sediment composition and microbial communities, they only explain part of the variability. This is most likely a consequence of the high inter-annual variability in abiotic and biotic parameters highlighting the difficulty to draw firm conclusions concerning drivers of biological changes at an annual or sub-annual resolution even with the 40-year varved sediment record from Nylandssjon. Hence, it is necessary to have an even longer time perspective in order to reveal the full implications of climate change.

Biological proxies from the Sokli Eemian (Marine Isotope Stage 5e) paleolake sequence from northeast Finland have previously shown that, unlike many postglacial records from boreal sites, the lake becomes increasingly eutrophic over time. Here, principal components (PC) were extracted from a high resolution multi-element XRF core scanning dataset to describe minerogenic input from the wider catchment (PC1), the input of S, Fe, Mn, and Ca-rich detrital material from the surrounding Sokli Carbonatite Massif (PC2), and chemical weathering (PC3). Minerogenic inputs to the lake were elevated early in the record and during two abrupt cooling events when soils and vegetation in the catchment were poor. Chemical weathering in the catchment generally increased over time, coinciding with higher air temperatures, catchment productivity, and the presence of acidic conifer species. Abiotic edaphic processes play a key role in lake ontogeny at this site stemming from the base cation- and nutrient-rich bedrock, which supports lake alkalinity and productivity. The climate history at this site, and its integrated effects on the lake system, appear to override development processes and alters its long-term trajectory.

The eastern Lesotho highlands are of considerable hydrological importance to southern Africa as a so-called ‘water tower’ for the surrounding region. Here, we contribute proxy-data inferring climate and vegetation changes over the past 1600 years, assessing in parallel inorganic and organic chemical analyses on a sediment core from Ladybird wetland, eastern Lesotho. Several proxies were used to determine changes in local vegetation dynamics, productivity, hydrology (δ13 C, δ15 N, C/N, TOC) and the input and source of the detrital components (Ca/Ti, CIA). The first part of the multi-proxy record (AD 400–800) shows stable terrestrial conditions and low detrital input, followed by higher variability in almost all proxies between ca. AD 900 and 1200. The δ13 C record infers a higher proportion of C4 vegetation, tentatively associated with higher temperatures during this phase, coeval with the Medieval Climate Anomaly (MCA). After AD 1200, local conditions change gradually from purely terrestrial, towards the typical wetland environment prevailing today. A higher proportion of C3 plants and possibly an increase in aquatic organisms within the organic matrix corresponds with decreasing detrital input, suggesting locally high available moisture in this part of Lesotho during the Little Ice Age (LIA). Although age-model constraints impedes a robust regional comparison, the inferred climate variability is discussed as a tentative response to enhanced mid-latitude cyclonic activity during LIA, and the variable MCA climate conditions as indirectly dictated by changes in solar activity.

Epidemiology of fungaemia and fungal meningitis in Sweden : a nationwide retrospective observational survey from sept 2015-aug 2016