Aim: This research investigates the distribution of the non-indigenous calanoid copepod Pseudodiaptomus marinus Sato, 1913 in Italian coastal waters as retrieved by the data collected in the Marine Strategy Framework Directive (MSFD) programme in the 2015-2023 time window. Location: Italian marine coastal waters, Mediterranean Sea. Taxon: Pseudodiaptom marinus Sato, 1913 (Copepoda, Calanoida). Methods: The occurrence of P. marinus along the Italian coasts was checked in the Italian MSFD database, focusing on Descriptor 1 (D1: marine biodiversity) and Descriptor 2 (D2: non-indigenous species). The temporal and seasonal patterns at a key site (port of Civitavecchia) were also examined. Results: The MSFD records account for a similar to 15% increase in the number of P. marinus occurrences in Italian waters, expanding the documented range of this species. Records were more abundant in ports and coastal sites, and copepodites dominated the observations. In addition, the seasonal analysis at the port of Civitavecchia showed late-summer peaks, indicating recurrent recruitment and establishment. Main Conclusions: These findings demonstrate the ongoing expansion and successful establishment of P. marinus along the Italian coasts and confirm the role of coastal infrastructures as primary introduction pathways. This study highlights the importance of constant monitoring of the coastal areas to assess the introduction and establishment of non-indigenous species, and underlines the pivotal role of broad-scale initiatives like the MSFD to solicit transnational initiatives.

Toxicity tests with daphnids are important tools in the environmental impact assessment of aquatic ecosystems. The aim of this study was to characterize the swimming paths of Daphnia similis in response to two concentrations of the reference substance potassium chloride (KCl), as an additional expedite tool in evaluating the effects of contaminants. Bidimensional trajectory coordinates were obtained with image acquisition and processing methods and used to calculate the following metrics of D. similis behavior: mean swimming speed, hop rate, fractal dimension, and vertical occupancy. The swimming speed, hop rate and fractal dimension for the control group were significantly different from the KCl treatment at the higher concentration. Conversely, the vertical occupancy did not differ between the experimental conditions. The results of this investigation validate the use of behavioral analysis as a rapid and reliable approach to evaluate water contamination, aiding in early warning detection of water quality issues. The method can be further refined through the integration of machine learning applications in video tracking.

Propulsion by copepods requires high-speed video and intensive analyses. Routine smooth swimming is compared with small relocation jumps and escape reactions, relying on kinematics analyses of appendage movement. In this study, we used high-speed video at 1200 frames per second to determine the kinematic parameters of three types of swimming in Eurytemora affinis females: routine steady swimming, small relocation jumps and escape reactions. The average speed varied in the range 0.30-0.82 cm s-1 during steady routine swimming. This value increased to 4.48 +/- 1.01 cm s-1 during small relocation jumps, and reached 21.94 +/- 2.68 cm s-1 during escape reactions. The small angular amplitude (40-50 degrees) and the very high beat frequency (63-80 Hz) of the cephalic appendages during routine swimming indicate that E. affinis is a feeding-current feeder. The comparison of the angular displacements of the antennules, thoracic legs and abdomen with respect to the movement speed demonstrates that, both in the case of small relocation jumps and during escape reactions, the main propulsive role is played by the thoracic swimming legs and abdomen.

The NEREA (Naples Ecological REsearch for Augmented observatories) initiative aims to establish an augmented observatory in the Gulf of Naples (GoN), designed to advance the understanding of marine ecosystems through a holistic approach. Inspired by the Tara Oceans expedition and building on the scientific legacy of the MareChiara Long-Term Ecological Research (LTER-MC) site, NEREA integrates traditional physical, chemical, and biological measurements with state-of-the-art methodologies such as metabarcoding and metagenomics. Here we present the first 10 months of NEREA data, collected from April 2019 to January 2020, encompassing physico-chemical parameters, plankton biodiversity (e.g., microscopy and flow cytometry), prokaryotic and eukaryotic metabarcoding, a prokaryotic gene catalogue, and a collection of 3818 prokaryotic Metagenome-Assembled Genomes (MAGs). NEREA’s efforts produce a significant volume of multifaceted data, which enhances our understanding of marine ecosystems and promotes the development of scientific hypotheses and ideas.

Escaping a predator is one of the keys to success for any living creature. The performance of adults (males, females, and ovigerous females) of the cyclopoid copepod Oithona davisae exposed to an electrical stimulus is analysed as a function of temperature by measuring characteristic parameters associated with the escape movement (distance covered, duration of the appendage movement, mean and maximum escape speeds, Reynolds number). In addition, as a proxy for the efficiency of the motion, the Strouhal number was calculated. The escape performance showed temperature-dependent relationships within each adult state, as well as differences between sexes; additionally, changes owing to the presence of the egg sac were recorded in females. In a broader perspective, the results collected reveal the occurrence of different behavioural adaptations in males and females, adding to the comprehension of the mechanisms by which O. davisae interacts with its environment and shedding new light on the in situ population dynamics of this species.

HF radar systems have the potential to measure the wind direction, in addition to surface currents and wave fields. However, studies on HF radar for wind direction determination are rare in the scientific literature. Starting with the results presented in Saviano et al. (2021), we here expand on the reliability of the multiannual wind direction data retrieved over two periods, from May 2008 to December 2010 and from January to December 2012, by a network of three SeaSonde high-frequency (HF) radars operating in the Gulf of Naples (Central Tyrrhenian Sea, Western Mediterranean Sea). This study focuses on the measurements obtained by each antenna over three range cells along a coast–offshore transect, pointing to any potential geographically dependent measurement. The scarcity of offshore wind measurements requires the use of model-generated data for comparative purposes. The data here used are obtained from the Mediterranean Wind–Wave Model, which provides indications for both wave and wind parameters, and the ERA5@2km wind dataset obtained by dynamically downscaling ERA5 reanalysis. These data are first compared with in situ data and subsequently with HF-retrieved wind direction measurements. The analysis of the overall performance of the HF radar network in the Gulf of Naples confirms that the HF radar wind data show the best agreement when the wind speed exceeds a 5 m/s threshold, ensuring a sufficiently energetic surface wave field to be measured. The results obtained in the study suggest the necessity of wind measurements in offshore areas to validate the HF radar wind measurements and to improve the extraction algorithms. The present work opens up further investigations on the applications of wind data from SeaSonde HF radars as potential monitoring platforms, both in coastal and offshore areas.

Marine ecosystems, from coastal areas to open waters, teem with a multitude of heterotrophic and mixotrophic organisms collectively forming the zooplankton, the animal component of the plankton [...]

Molecular tools increasingly refine and improve the identification of zooplankton organisms based on phenotypic features, providing a more robust and comprehensive species description. Integration of data helps revealing the hidden diversity of zooplankton and facilitating the detection of rare and non-indigenous species. This approach, merging morphological characters and a diagnostic marker for specific identification, such as the mitochondrial cytochrome c oxidase I (COI), is here used to characterize key taxa from the zooplankton assemblage of the Gulf of Naples at the Long-Term Ecological Research site MareChiara (LTER-MC) (Central Tyrrhenian Sea, Western Mediterranean Sea). Zooplankton biodiversity assessment using integrated taxonomy was focused on selected crustacean groups: cyclopod copepods (Agetus typicus, Oithona plumifera, Oncaea mediterranea, Oncaea scottodicarloi); newly records of cladocerans (Evadne nordmanni), euphausiids (Euphausia krohnii, Nematoscelis megalops, Nyctiphanes spp.) and sergestids (Lucifer typus), with the aim to boost the knowledge of real zooplankton biodiversity. The results of our investigation provide new high-quality molecular references of the analysed taxa and contribute to unveiling the genetic diversification of zooplankton species and their relevant ecological significance for Mediterranean coastal waters.

Among non-native copepods, the calanoid Pseudodiaptomus marinus Sato, 1913 is the species probably spreading at the fastest pace in European and neighbouring waters since its first record in the Adriatic Sea in 2007. In this contribution, we provide an update on the distribution of P. marinus in the Mediterranean and Black Seas, along the Atlantic coasts of Europe, in the English Channel and in the southern North Sea. Starting from a previous distribution overview, we include here original and recently (2019–2023) published data to show the novel introduction of this species in different geographical areas, and its secondary spreading in already colonised regions. The picture drawn in this work confirms the strong ability of P. marinus to settle in environments characterised by extremely diverse abiotic conditions, and to take advantage of different vectors of introduction. The data presented allow speculations on realistic future introductions of P. marinus and on the potential extension of its distribution range.

Centropages typicus is a temperate calanoid copepod occurring in Atlantic and Mediterranean coastal waters, where its reproductive biology and population dynamics are well-known. C. typicus has also been suggested as a key species for monitoring the impact of environmental changes on copepod secondary production. The aim of this study is to investigate the seasonal and interannual reproductive (egg production and egg hatching success) and feeding (fecal pellet production) traits, population abundance and structure (sex ratio) of C. typicus over a 20-year period at the Long-Term Ecological Research site MareChiara (LTER-MC) in the Gulf of Naples (Central Tyrrhenian Sea, Western Mediterranean Sea), identifying specific trends and patterns. At a seasonal scale, egg production and hatching success were tightly linked with maxima in February-March, driving the juvenile and adult springtime population peaks but showing a poor correlation with phytoplankton abundance, pointing to an omnivorous diet. At a multiannual scale, an observed decrease in the population is backed up by a reduction in egg production, despite an increase in hatching success. The results of this study provide new elements to comprehend the links between C. typicus functional traits, population dynamics, and environmental factors and highlight the importance of running LTER series to monitor the trends in natural environments.

Iron is an essential element for the functioning of cellular processes. Ferritins, the major intracellular iron storage proteins, convert the free Fe2+ into the nontoxic Fe3+ which can be stored and transported where needed. To date, little is known about the iron metabolism in copepods; however, in these crustaceans, ferritins have been used as biomarkers of stress and diapause. A limiting factor of these studies has been the use of a single ferritin transcript as a biomarker. In this paper, we in silico mined the publicly available copepod transcriptomes to characterize the multiplicity of the ferritin transcripts in different orders and families. We also examined the expression of ferritin in three ecologically important copepods—Calanus finmarchicus, C. helgolandicus and Temora stylifera—during development and under stress conditions. A full-length transcript encoding ferritin heavy chain has been identified in all 27 mined transcriptomes, with 50% of the species possessing multiple transcripts. Ferritin expression increased in C. finmarchicus during the early–late development transition, and in T. stylifera females exposed to oxylipins at sea. Overall, our results suggest that copepod ferritins can be involved in iron storage, larval development and stress response, thus representing potential biomarker genes for ocean health status monitoring.

This chapter focuses on the analysis and measurement of sea waves. After a brief review about the generation and propagation of ocean waves, the most common wave spectra are briefly described. Subsequently, the spectral analysis of sea waves is discussed focusing on the most promising techniques that allow obtaining the sea state parameters starting from the wave elevation time history. Finally, two techniques useful to measure the sea wave parameters are outlined. The former is based on the reverse analysis of the motions a ship advancing at a constant speed in a seaway, and the latter focuses on the employment of coastal high-frequency radars.

Living organisms deeply rely on the acquisition of chemical signals in any aspect of their life, from searching for food, mating and defending themselves from stressors. Copepods, the most abundant and ubiquitous metazoans on Earth, possess diversified and highly specified chemoreceptive structures along their body. The detection of chemical stimuli activates specific pathways, although this process has so far been analyzed only on a relatively limited number of species. Here, in silico mining of 18 publicly available transcriptomes is performed to delve into the copepod chemosensory genes, improving current knowledge on the diversity of this multigene family and on possible physiological mechanisms involved in the detection and analysis of chemical cues. Our study identifies the presence of ionotropic receptors, chemosensory proteins and gustatory receptors in copepods belonging to the Calanoida, Cyclopoida and Harpacticoida orders. We also confirm the absence in these copepods of odorant receptors and odorant-binding proteins agreeing with their insect specificity. Copepods have evolved several mechanisms to survive in the harsh marine environment such as producing proteins to respond to external stimulii. Overall, the results of our study open new possibilities for the use of the chemosensory genes as biomarkers in chemical ecology studies on copepods and possibly also in other marine holozooplankters.

The Mediterranean Sea is a prominent climate-change hot spot, with many socioeconomically vital coastal areas being the most vulnerable targets for maritime safety, diverse met-ocean hazards and marine pollution. Providing an unprecedented spatial and temporal resolution at wide coastal areas, high-frequency radars (HFRs) have been steadily gaining recognition as an effective land-based remote sensing technology for continuous monitoring of the surface circulation, increasingly waves and occasionally winds. HFR measurements have boosted the thorough scientific knowledge of coastal processes, also fostering a broad range of applications, which has promoted their integration in coastal ocean observing systems worldwide, with more than half of the European sites located in the Mediterranean coastal areas. In this work, we present a review of existing HFR data multidisciplinary science-based applications in the Mediterranean Sea, primarily focused on meeting end-user and science-driven requirements, addressing regional challenges in three main topics: (i) maritime safety, (ii) extreme hazards and (iii) environmental transport process. Additionally, the HFR observing and monitoring regional capabilities in the Mediterranean coastal areas required to underpin the underlying science and the further development of applications are also analyzed. The outcome of this assessment has allowed us to provide a set of recommendations for future improvement prospects to maximize the contribution to extending science-based HFR products into societally relevant downstream services to support blue growth in the Mediterranean coastal areas, helping to meet the UN's Decade of Ocean Science for Sustainable Development and the EU's Green Deal goals.

The analysis of copepod behaviour gained an increasing impetus over the past decade thanks to the advent of computer-assisted video analysis tools. Since the automated tracking consists in detecting the animal’s position frame by frame and improving signals corrupted by strong background noise, a crucial role is played by the length of the video recording. The aim of this study is to: (i) assess whether the recording time influences the analysis of a suite of movement descriptive parameters; (ii) understand if the recording time influences the outcome of the statistical analyses when hypotheses on the effect of toxicants/chemicals on the freshwater invertebrate behaviour are tested. We investigated trajectory parameters commonly used in behavioural studies—swimming speed, percentage of activity and trajectory convex hull—derived from the trajectories described by the inbenthic–interstitial freshwater copepod Bryocamptus pygmaeus exposed to a sub-lethal concentration of diclofenac. The analyses presented in this work indicate that the recording time did not influence the outcome of the results for the swimming speed and the percentage of activity. For the trajectory convex hull area, our results showed that a recording session lasting at least 3 min provided robust results. However, further investigations are needed to disentangle the role of concurrent factors, such as the behavioural analysis of multiple individuals simultaneously, whether they are of the same or opposite sex and the implications on sexual behaviour, competition for resources and predation.

Due to the semi-enclosed nature of the Mediterranean Sea, natural disasters and anthropogenic activities impose stronger pressures on its coastal ecosystems than in any other sea of the world. With the aim of responding adequately to science priorities and societal challenges, littoral waters must be effectively monitored with high-frequency radar (HFR) systems. This land-based remote sensing technology can provide, in near-real time, fine-resolution maps of the surface circulation over broad coastal areas, along with reliable directional wave and wind information. The main goal of this work is to showcase the current status of the Mediterranean HFR network and the future roadmap for orchestrated actions. Ongoing collaborative efforts and recent progress of this regional alliance are not only described but also connected with other European initiatives and global frameworks, highlighting the advantages of this cost-effective instrument for the multi-parameter monitoring of the sea state. Coordinated endeavors between HFR operators from different multi-disciplinary institutions are mandatory to reach a mature stage at both national and regional levels, striving to do the following: (i) harmonize deployment and maintenance practices; (ii) standardize data, metadata, and quality control procedures; (iii) centralize data management, visualization, and access platforms; and (iv) develop practical applications of societal benefit that can be used for strategic planning and informed decision-making in the Mediterranean marine environment. Such fit-for-purpose applications can serve for search and rescue operations, safe vessel navigation, tracking of marine pollutants, the monitoring of extreme events, the investigation of transport processes, and the connectivity between offshore waters and coastal ecosystems. Finally, future prospects within the Mediterranean framework are discussed along with a wealth of socioeconomic, technical, and scientific challenges to be faced during the implementation of this integrated HFR regional network.

Intense atmospheric disturbances, which impact directly on the sea surface causing a significant increase in wave height and sometimes strong storm surges, have become increasingly frequent in recent years in the Mediterranean Sea, producing extreme concern in highly populated coastal areas, such as the Gulf of Naples (Western Mediterranean Sea, Central Tyrrhenian Sea). In this work, fifty-six months of wave parameters retrieved by an HF radar network are integrated with numerical outputs to analyze the seasonality of extreme events in the study area and to investigate the performance of HF radars while increasing their distances from the coast. The model employed is the MWM (Mediterranean Wind-Wave Model), providing a wind-wave dataset based on numerical models (the hindcast approach) and implemented in the study area with a 0.03° spatial resolution. The integration and comparison with the MWM dataset, carried out using wave parameters and spectral information, allowed us to analyze the availability and accuracy of HF sampling during the investigated period. The statistical comparisons highlight agreement between the model and the HF radars during episodes of sea storms. The results confirm the potential of HF radar systems as long-term monitoring observation platforms, and allow us to give further indications on the seasonality of sea storms under different meteorological conditions and on their energy content in semi-enclosed coastal areas, such as the Gulf of Naples.

Zooplankton molecular analyses allow for accurate species identification with a proper molecular signature, complementing classic phenotypic-based taxonomy (α taxonomy). For the first time in the Mediterranean Sea, cytochrome oxidase I (COI) gene sequences of calanoid copepods were associated with morphological identification, HD and SEM images, using a fully integrated approach to assess taxonomic diversity. Such method was applied to selected species, generating consensus sequences from the Gulf of Naples (Central Tyrrhenian Sea, Western Mediterranean Sea) also including reference barcodes of three target species ( Nannocalanus minor , Pleuromamma gracilis and the non-indigenous species (NIS) Pseudodiaptomus marinus ) that are new for the Mediterranean area. The new barcodes were selected including: dominant and rare species; species that were originally described in the study area as type locality, but lacking a molecular description; emergent NIS and potential species complex. The integration between morphological and molecular identification by tree placement, using species-specific highly conserved oligonucleotides, also provided new and high-quality references of the most common and abundant copepod genera and species in the Mediterranean Sea. Our regional reference library was then integrated and analyzed with global data reference available on BOLD database to explore the presence of potential cryptic species and biogeographic patterns and links among geographically distant populations of copepods. Overall, this study provides valuable insight into the actual copepod taxonomic diversity and contributes to building baseline knowledge to monitor coastal biodiversity in neritic areas worldwide, where copepods are of paramount ecological importance, paving the way for future metabarcoding studies.

Abstract. The Mediterranean Sea is a prominent climate change hot spot, being their socio-economically vital coastal areas the most vulnerable targets for maritime safety, diverse met-ocean hazards and marine pollution. Providing an unprecedented spatial and temporal resolution at wide coastal areas, High-frequency radars (HFRs) have been steadily gaining recognition as an effective land-based remote sensing technology for a continuous monitoring of the surface circulation, increasingly waves and occasionally winds. HFR measurements have boosted the thorough scientific knowledge of coastal processes, also fostering a broad range of applications, which has promoted their integration in the Coastal Ocean Observing Systems worldwide, with more than half of the European sites located in the Mediterranean coastal areas. In this work, we present a review of existing HFR data multidisciplinary science-based applications in the Mediterranean Sea, primarily focused on meeting end-users and science-driven requirements, addressing regional challenges in three main topics: i) maritime safety; ii) extreme hazards; iii) environmental transport process. Additionally, the HFR observing and monitoring regional capabilities in the Mediterranean region required to underpin the underlying science and the further development of applications are also analyzed. The outcome of this assessment has allowed us to finally provide a set of recommendations for the future improvement prospects to maximize the contribution in extending the science-based HFR products into societal relevant downstream services to support the blue growth in the Mediterranean coastal areas, helping to meet the UN’s Decade of Ocean Science for Sustainable Development and the EU’s Green Deal goals.

Crowding has a major impact on the dynamics of many material and biological systems, inducing effects as diverse as glassy dynamics and swarming. While this issue has been deeply investigated for a variety of living organisms, more research remains to be done on the effect of crowding on the behaviour of copepods, the most abundant metazoans on Earth. To this aim, we experimentally investigate the swimming behaviour, used as a dynamic proxy of animal adaptations, of males and females of the calanoid copepod Centropages typicus at different densities of individuals (10, 50 and 100 ind. l-1) by performing three-dimensional single-organism tracking. We find that the C. typicus motion is surprisingly unaffected by crowding over the investigated density range. Indeed, the mean square displacements as a function of time always show a crossover from ballistic to Fickian regime, with poor variations of the diffusion constant on increasing the density. Close to the crossover, the displacement distributions display exponential tails with a nearly density-independent decay length. The trajectory fractal dimension, D3D ≅ 1.5, and the recently proposed 'ecological temperature' also remain stable on increasing the individual density. This suggests that, at least over the range of animal densities used, crowding does not impact on the characteristics of C. typicus swimming motion, and that a homeostatic mechanism preserves the stability of its swimming performance.