We have an ongoing interest in the large-scale analysis of consumer-generated media, of which weblogs are currently of special concern. In this position paper, we describe how our data gathering and analysis system, called T2™, is being used to collect weblog entries and analyze them for reactions to issues and events in the commercial and government arenas. The paper includes preliminary lessons learned in trying to apply our sentiment analysis techniques to the highly informal language usage found in weblogs.

BioTechniquesVol. 34, No. 2 BenchmarkOpen AccessTM4: A Free, Open-Source System for Microarray Data Management and AnalysisA.I. Saeed, V. Sharov, J. White, J. Li, W. Liang, N. Bhagabati, J. Braisted, M. Klapa, T. Currier, M. Thiagarajan, A. Sturn, M. Snuffin, A. Rezantsev, D. Popov, A. Ryltsov, E. Kostukovich, I. Borisovsky, Z. Liu, A. Vinsavich, V. Trush & J. QuackenbushA.I. SaeedThe Institute for Genomic Research, Rockville, MDSearch for more papers by this author, V. SharovThe Institute for Genomic Research, Rockville, MDSearch for more papers by this author, J. WhiteThe Institute for Genomic Research, Rockville, MDSearch for more papers by this author, J. LiThe Institute for Genomic Research, Rockville, MDSearch for more papers by this author, W. LiangThe Institute for Genomic Research, Rockville, MDSearch for more papers by this author, N. BhagabatiThe Institute for Genomic Research, Rockville, MDSearch for more papers by this author, J. BraistedThe Institute for Genomic Research, Rockville, MDSearch for more papers by this author, M. KlapaThe Institute for Genomic Research, Rockville, MDSearch for more papers by this author, T. CurrierThe Institute for Genomic Research, Rockville, MDSearch for more papers by this author, M. ThiagarajanThe Institute for Genomic Research, Rockville, MDSearch for more papers by this author, A. SturnThe Institute for Genomic Research, Rockville, MDSearch for more papers by this author, M. SnuffinThe Institute for Genomic Research, Rockville, MDSearch for more papers by this author, A. RezantsevDataNaut, Bethesda, MDSearch for more papers by this author, D. PopovDataNaut, Bethesda, MDSearch for more papers by this author, A. RyltsovDataNaut, Bethesda, MDSearch for more papers by this author, E. KostukovichDataNaut, Bethesda, MDSearch for more papers by this author, I. BorisovskyDataNaut, Bethesda, MDSearch for more papers by this author, Z. LiuSyntek Systems, Bethesda, MDSearch for more papers by this author, A. VinsavichSyntek Systems, Bethesda, MDSearch for more papers by this author, V. TrushSyntek Systems, Bethesda, MDSearch for more papers by this author & J. Quackenbush*Address correspondence to: Dr. John Quackenbush, The Institute for Genomic Research (TIGR), Rockville, MD, USA. e-mail: E-mail Address: johnq@tigr.orgThe Institute for Genomic Research, Rockville, MDDepartment of Biochemistry, George Washington University, Washington, D.C., USASearch for more papers by this authorPublished Online:24 Sep 2018https://doi.org/10.2144/03342mt01AboutSectionsPDF/EPUB ToolsAdd to favoritesDownload CitationsTrack Citations ShareShare onFacebookTwitterLinkedInReddit FiguresReferencesRelatedDetailsCited ByMetabolic adjustments in response to ATP spilling by the small DX protein in a Streptomyces strain8 March 2023 | Frontiers in Cell and Developmental Biology, Vol. 11Limiting etioplast gene‐expression induces apical hook twisting during skoto‐morphogenesis of Arabidopsis seedlings6 February 2023 | The Plant JournalIntegrated genomic approaches delineate a novel role of ROP1 ENHANCER1 in controlling seed protein content of chickpea15 November 2022 | Journal of Experimental Botany, Vol. 74, No. 3Genome-wide evolutionary analysis of AUX/IAA gene family in wheat identifies a novel gene TaIAA15-1A regulating flowering time by interacting with ARFInternational Journal of Biological Macromolecules, Vol. 227Comparative Genomic Analysis Reveals Gene Content Diversity, Phylogenomic Contour, Putative Virulence Determinants, and Potential Diagnostic Markers within Pythium insidiosum Traits27 January 2023 | Journal of Fungi, Vol. 9, No. 2Transcriptome Analysis of the Regulatory Mechanism of Exogenous Spermidine in High Temperature Stress Resistance of Tomato Seedlings17 January 2023 | Agronomy, Vol. 13, No. 2Lysiphyllum strychnifolium (Craib) A. 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The Tarragon Consulting team participated in the primary task of the TREC 2003 Genomics Track. We used a combination of knowledge-engineering and corpus analysis to construct semantic models of the interactions between genes/proteins and other biological entities in the organism, and then used automatic methods to convert these models into evidential queries that could be executed by the K2 search engine from Verity, Inc. The primary goal of our participation in the Genomics Track was to establish a performance baseline using ontologicallygrounded techniques that are scalable and implementable using current commercial retrieval technology. The results from both our official submissions and subsequent experiments demonstrate that good performance can be achieved using our approach.

The Tarragon Consulting team participated in the primary task of the TREC 2003 Genomics Track. We used a combination of knowledge-engineering and corpus analysis to construct semantic models of the interactions between genes/proteins and other biological entities in the organism, and then used automatic methods to convert these models into evidential queries that could be executed by the K2 search engine from Verity, Inc. The primary goal of our participation in the Genomics Track was to establish a performance baseline using ontologicallygrounded techniques that are scalable and implementable using current commercial retrieval technology. The results from both our official submissions and subsequent experiments demonstrate that good performance can be achieved using our approach.