The Aleutian Trench area is characterized by topographic and hydrographic discontinuities that may act as dispersal barriers, as well as strong environmental gradients that are likely to limit species distribution and promote diversification. The western part of the Aleutian Trench is comparably well studied, but there has been a paucity of benthic samples from its eastern part. This study aims to shed light on the benthic fauna of the eastern Aleutian Trench by analysing patterns in density and community structure of macrobenthic infauna, particularly isopod crustaceans and polychaetes, in relation to various environmental variables. The samples for this study were collected during the Aleutian Trench Biodiversity Studies (AleutBio) expedition (SO293) in 2022, which involved transects from north to south (abyssal North, hadal, abyssal South) along the Aleutian Trench and two sampling areas in the adjacent Bering Sea. In total, 14 stations at depths of 3,511–7,287 m were sampled using a box corer. Our findings indicated polychaetes to dominate macrofaunal communities followed by peracarids and molluscs. We observed a significant decrease in the densities of total macrofauna, polychaetes, and isopods with depth. There were no significant differences in macrofaunal composition at higher taxonomic levels, nor in the family-level composition of polychaetes and isopods between regions. Yet, at higher taxonomic resolution, i.e. genus and species level of Isopoda, the composition of isopods exhibited significant differences between the north and south abyssal as well as hadal region of the Aleutian Trench. Most isopod species identified (∼77%) were new to science and only a few were shared between regions or depth zonation. Additionally, the abyssal north Aleutian Trench showed a higher species diversity than the hadal and abyssal south. Overall, depth and sediment characteristics appeared to be the main drivers of differences in macrofaunal densities, community composition and isopod diversity. The study of deep-sea organisms, particularly isopods — one of the most abundant and diverse groups of macrofauna in the abyssal and hadal zones — is crucial for understanding, monitoring, and assessing the integrity of deep-sea benthic ecosystems. This includes assessing their biodiversity, distribution patterns, and the potential impacts of global change on species with limited dispersal capacity. However, more samples, higher taxonomic resolution and genetic analyses would help to elucidate ecological and environmental drivers of macrofaunal and especially isopod composition and connectivity across the trench.
A new species of Malacoceros is described from estuarine equatorial waters in Libreville (Gabon, West Africa). During a recent environmental study aimed to assess the urban impact on an estuarine ecosystem near Libreville, the collection of sediment samples from the area was undertaken. The local invertebrate macrofauna had not been previously well studied, and to document the biodiversity, specimens were examined in more detail. A new species of Malacoceros was discovered, occurring in mangrove areas. The new species is described and illustrated in detail, and information on three molecular markers was retrieved and partially used for species delimitation analysis. The new species resembles Malacoceros indicus (Fauvel 1928) described from India but is easily distinguished by a very conspicuous morphological character, the presence of 7-11 large tubercles along the anterior margin of the prostomium. The presence of such conspicuous tubercles has never been observed before in Malacoceros. Maximum likelihood trees for species of Malacoceros and the close genera of Rhynchospio, for which we have data, are also provided. The suitability of characters used for species delimitation in Malacoceros is discussed.
In this work, the diversity of the genus Orbiniella in the Nordic Seas and the North Atlantic waters south of Iceland is studied based on the analyses of molecular markers (mitochondrial COI, 16S rDNA and nuclear ITS2) and morphological characters. Our results showed the presence of at least five genetic lineages in the studied material which could also be morphologically identified by their segmental annulation patterns, the number and the shape of acicular spines, and the length and the shape of pygidial lobes. The species name Orbiniella petersenae is assigned to one of the lineages restricting its geographical and vertical distribution to the deep-sea areas north of Iceland and Jan Mayen, and three lineages are described as new species (i.e., Orbiniella griegi Meca & Budaeva, sp. nov., Orbiniella mayhemi Meca & Budaeva, sp. nov., and Orbiniella parapari Meca & Budaeva, sp. nov.) elevating the number of known species in the genus to 25. Three deep-sea species of Orbiniella in our study are reported only north of the Greenland-Iceland-Scotland Ridge, one deep-sea species found south of the ridge. A single shallow-water species is distributed along the ridge and on the Norwegian shelf.
Most efforts at improving accuracy in phylogenomic reconstructions have focused on improving tree-building methods or orthology determination. Even though the use of whole genome sequence or transcriptome data is increasing, the degree to which accurate genome assembly and annotation influence phylogenetic inference has not been well explored. Here, we use low-coverage whole genome sequencing of spionid annelids to explore the impact of different assemblers and annotation strategies on tree reconstruction. We also produce a phylogenetic hypothesis that spans the breadth of Spionidae, examining the current systematics of the group, which is based on morphological parsimony analyses and classical taxonomy. Our results show that both assembly and annotation can have important consequences for the pool of loci that may be available for tree reconstruction. When an identical phylogenomic pipeline is used, differences in assembly and annotation can account for variation in reconstructed topologies. Interestingly, the completeness and depth of the data used for training annotation software (i.e. data from model systems) appear to be more important, by some measures, than the degree of phylogenetic relatedness of the organism from which training data are drawn. Despite variation in recovered topologies, the recognised subfamily Spioninae is nested within Nerininae, suggesting that diagnostic characters of Nerininae (e.g. thick egg membrane, short-headed sperm) are symplesiomorphies of Spionidae rather than apomorphies of a particular subclade. With the increased use of genomic data, our results advocate for a broader consideration of how assembly and annotation may impact data matrices used in phylogenomic analyses.
Distributional ranges of selected deep-sea annelids are examined in an integrative approach using genetic markers (COI, 18S) and morphology. The source material comes from various deep-sea expeditions to the Pacific and Atlantic Oceans realized between 1998 and 2015. Selection criteria for the eventual target species are a reliably documented widespread distribution in the deep-sea, and the presence in sufficient numbers of specimens in our source material. Specimens from museum collections are also incorporated. Species studied are Sigambra magnuncus, Bathyglycinde profunda and B. sibogana, Progoniada regularis, P. cf. regularis, and Spiophanes cf. longisetus, plus three newly described species: Octomagelona borowskii sp. nov., Spiophanes australissp. nov., and Spiophanes pacificus sp. nov. Illustrated descriptions are provided and the morphological distinction to congeners discussed. Genetic diversity is highest in most frequently found species, also reflected by the large numbers of genetically divergent haplotypes. The majority of haplotypes are singletons. Pan-oceanic distribution is observed for Progoniada regularis, Bathyglycinde profunda and Sigambra magnuncus, but even species restricted to a single ocean have distributions spanning hundreds or even thousands of kilometres. Our data suggest multiple and possibly ongoing dispersal and genetic exchange between oceans, most cogent for Sigambra magnuncus.
Euphrosinidae (Amphinomida) is a clade of generally small, short but stout annelids characterized by long, calcareous chaetae that may be distally forked or ringent. Little is known about the diversity of Euphrosinidae from the North Atlantic and the phylogeny of the group has received little attention. Here, we examined 59 specimens of Euphrosinidae (primarily from the IceAGE I and II cruises) and sequenced fragments of the mitochondrial 16S rDNA and nuclear 28S rDNA genes to improve understanding of euphrosinid diversity in the North Atlantic and gain insights into euphrosinid phylogeny. Maximum likelihood analysis of 28S + 16S recovered Euphrosine as a ‘basal’ paraphyletic grade; a clade containing E. armadillo (plus other unidentified specimens) was sister to Euphrosinopsis + Euphrosinella while a clade containing E. aurantiaca and E. foliosa (plus three unidentified species) was recovered sister to all other sampled Euphrosinidae species. Species delimitation analyses based on 16S sequences identified between 14 and 11 species of Euphrosinidae with as many as ten distinct species from the North Atlantic. The IceAGE material investigated includes one new species of Euphrosinopsis and at least one new species of Euphrosinella. Unfortunately, because most of this material was preserved in ethanol, we were unable to characterize key features needed for adequate species descriptions. Additionally, PCR contaminants from presumed gut contents suggest that some euphrosinids eat other annelids, namely Cirratulidae and Syllidae.
In Australia, the deep-water (bathyal and abyssal) benthic invertebrate fauna is poorly known in comparison with that of shallow (subtidal and shelf) habitats. Benthic fauna from the deep eastern Australian margin was sampled systematically for the first time during 2017 RV ‘Investigator’ voyage ‘Sampling the Abyss’. Box core, Brenke sledge, and beam trawl samples were collected at one-degree intervals from Tasmania, 42°S, to southern Queensland, 24°S, from 900 to 4800 m depth. Annelids collected were identified by taxonomic experts on individual families around the world. A complete list of all identified species is presented, accompanied with brief morphological diagnoses, taxonomic remarks, and colour images. A total of more than 6000 annelid specimens consisting of 50 families (47 Polychaeta, one Echiura, two Sipuncula) and 214 species were recovered. Twenty-seven species were given valid names, 45 were assigned the qualifier cf., 87 the qualifier sp., and 55 species were considered new to science. Geographical ranges of 16 morphospecies extended along the eastern Australian margin to the Great Australian Bight, South Australia; however, these ranges need to be confirmed with genetic data. This work providing critical baseline biodiversity data on an important group of benthic invertebrates from a virtually unknown region of the world’s ocean will act as a springboard for future taxonomic and biogeographic studies in the area.
During RV MS Merian expedition MSM75, an international, multidisciplinary team explored the Reykjanes Ridge from June to August 2018. The first area of study, Steinahóll (150–350 m depth), was chosen based on previous seismic data indicating hydrothermal activity. The sampling strategy included ship- and AUV-mounted multibeam surveys, Remotely Operated Vehicle (ROV), Epibenthic Sledge (EBS), and van Veen grab (vV) deployments. Upon returning to Steinahóll during the final days of MSM75, hydrothermal vent sites were discovered using the ROV Phoca (Kiel, GEOMAR). Here we describe and name three new, distinct hydrothermal vent site vulnerable marine ecosystems (VMEs); Hafgufa, Stökkull, Lyngbakr. The hydrothermal vent sites consisted of multiple anhydrite chimneys with large quantities of bacterial mats visible. The largest of the three sites (Hafgufa) was mapped, and reconstructed in 3D. In total 23,310 individual biological specimens were sampled comprising 41 higher taxa. Unique fauna located in the hydrothermally venting areas included two putative new species of harpacticoid copepod (Tisbe sp. nov. and Amphiascus sp. nov.), as well as the sponge Lycopodina cupressiformis (Carter, 1874). Capitellidae Grube, 1862 and Dorvilleidae Chamberlin, 1919 families dominated hydrothermally influenced samples for polychaetes. Around the hydrothermally influenced sites we observed a notable lack of megafauna, with only a few species being present. While we observed hydrothermal associations, the overall species composition is very similar to that seen at other shallow water vent sites in the north of Iceland, such as the Mohns Ridge vent fields, particularly with peracarid crustaceans. We therefore conclude the community overall reflects the usual “background” fauna of Iceland rather than consisting of “vent endemic” communities as is observed in deeper vent systems, with a few opportunistic species capable of utilizing this specialist environment.
A new spionid polychaete, Spio pigmentata sp. nov., is described from the southern and western coasts of Korea. This new species differs from its congeners by the combination of the following morphological characteristics: the presence of orange-brown pigmentation on the anterior part of the prostomium, black pigmentation on the peristomium and along the body, U-shaped nuchal organs, a comparatively long extension of metameric dorsal ciliated organs, three pairs of white dots per chaetiger, two to three posterior abranchiate chaetigers, and the presence of tridentate neuropodial hooded hooks. The partial 16S ribosomal DNA (rDNA) and nuclear 18S rDNA sequences of the new species and Spio sp. 2 reported by Abe and Sato-Okoshi (2021) from Japan showed high similarity, indicating that these two specimens belong to the same species. A detailed description and illustrations of the new species, together with molecular information, are provided.
Pholoe species described from northern European coastal waters are studied here, based on morphological and molecular methods. We confirm the current taxonomic status of P. assimilis, P. baltica, P. inornata and P. pallida. All species descriptions are reviewed and refined, barcodes are provided allowing the identification of these species based on molecular markers. Expanding morphological methods by using confocal laser scanning microscopy has added new characters to species diagnoses and makes species identification more secure. The reliability of characters traditionally used for identification of Pholoe species is evaluated. The newly presented identification key allows the delimitation of the four species reported for European coastal waters and also includes P. minuta and P. longa. The latter have been originally described from Greenland, but were often reported from European coastal waters. The results of our studies provide new insights into the distribution of the different species. Relationships of Pholoe species from mainly northern European waters are analysed based on molecular mitochondrial and nuclear markers. We stress the need for the prospective development of a precise terminology for prostomial appendages in Pholoe by including fine anatomical studies.
Prionospio Malmgren 1867 and Aurospio Maciolek 1981 (Annelida: Spionidae) are polychaete genera commonly found in the deep sea. Both genera belong to the Prionospio complex, whose members are known to have limited distinguishing characters. Morphological identification of specimens from the deep sea is challenging, as fragmentation and other damages are common during sampling. These issues impede investigations into the distribution patterns of these genera in the deep sea. In this study, we employ two molecular markers (16S rRNA and 18S) to study the diversity and the distribution patterns of Prionospio and Aurospio from the tropical North Atlantic, the Puerto Rico Trench and the central Pacific. Based on different molecular analyses (Automated Barcode Gap Discovery, GMYC, pairwise genetic distances, phylogenetics, haplotype networks), we were able to identify and differentiate 21 lineages (three lineages composed solely of GenBank entries) that represent putative species. Seven of these lineages exhibited pan-oceanic distributions (occurring in the Atlantic as well as the Pacific) in some cases even sharing identical 16S rRNA haplotypes in both oceans. Even the lineages found to be restricted to one of the oceans were distributed over large regional scales as for example across the Mid-Atlantic Ridge from the Caribbean to the eastern Atlantic (> 3389 km). Our results suggest that members of Prionospio and Aurospio may have the potential to disperse across large geographic distances, largely unaffected by topographic barriers and possibly even between oceans. Their high dispersal capacities are probably explained by their free-swimming long-lived planktonic larvae.
Detailed morphological study of more than 2600 North East Atlantic (NEA) sphaerodorids (SphaerodoridaeAnnelida) and phylogenetic analyses of DNA sequences of representatives of several identified morphospecies enforced changing the current systematic classification within the family allowed the discovery of new species provided new information about the morphological and genetic characterisation of members of this group and increased the species occurrence data to better infer their geographic and bathymetric distribution ranges. Phylogenetic analyses of nuclear (18S rRNA and 28S rRNA) and mitochondrial sequences (COI and 16S rRNA) of NEA short-bodied sphaerodorids revealed outstanding results including paraphyly of the genera Sphaerodoropsis Sphaerodoridium, and Sphaerephesia. The number of longitudinal and transverse rows of dorsal macrotubercles is proposed as potential synapomorphies for the main clades and are consequently herein used for the genera delimitation. The new classification proposed here implies nomenclatural changes and the erection of a new genus Geminofilum gen. n. to accommodate the species previously considered as Sphaerodoropsis with two transverse rows of dorsal macrotubercles per segment. Four species are being described herein: Euritmianordica Capa & Bakken sp. n. Sphaerephesiamultichaeta Capa Moreira & Parapar sp. n. Sphaerephesiaponsi Capa Parapar & Moreira sp. n. and Sphaerodoridiumceliae Moreira Capa & Parapar sp. n. Characterisation of the other 21 species including updated iconography and an identification key to all NEA short-bodied sphaerodorids are provided.
Laonice Malmgren, 1867 (Annelida: Spionidae) is a common polychaete genus in the deep-sea. Although most species are quite well studied morphologically, fragmentation and other damage that occurs during sampling often hampers morphological species identification of deep-sea specimens. In this study, we employ three molecular markers (16S, COI and 18S) to study the biodiversity and the distribution patterns of Laonice from the tropical North Atlantic and the Puerto Rico Trench. Based upon different molecular analyses (Automated Barcode Gap Discovery, pairwise genetic distances, phylogenetics, haplotype networks) we were able to identify and differentiate eight Laonice species. Up to four of these species co-occurred sympatrically at the same station. The majority of species were found at multiple stations and two species in the eastern as well as western Atlantic had ranges of up to 4,000 km. Genetic differentiation across these extensive geographic distances was very low. Surprisingly, one 16S haplotype was shared between individuals 2,776 km apart and individuals from the Caribbean and the abyssal plain in the eastern Atlantic (>3,389 km) differed in only a single mutation in 16S. Our results suggest that members of this genus successfully disperse across large geographic distances and are largely unaffected by topographic barriers.