CaM-binding Protein 60-like G (CBP60g) and Systemic Acquired Resistance Deficient 1 (SARD1) are key immune signalling regulators that redundantly promote salicylic acid (SA) biosynthesis and plant immunity. Pathogen effectors often target these immune nodes to suppress plant defence. However, the role of bacterial effectors in disabling CBP60g and SARD1 to increase plant susceptibility remains unclear. In this study, we show that RipAW, an E3 ligase effector from Ralstonia solanacearum , induces root architecture changes and enhances plant susceptibility to R. solanacearum in Est::RipAW transgenic plants. The constitutively expressed RipAW (C177S) , lacking E3 ligase activity, did not affect root architecture or plant susceptibility, indicating that RipAW's E3 ligase activity is crucial for these phenotypes. Transcriptional profiling of Est::RipAW plants revealed strong up-regulation of CBP60g and SARD1, while the SA signalling pathway remained in a basal state. Transient expression of RipAW and CBP60g in Nicotiana benthamiana showed that RipAW associates with CBP60g and affects its stability. Genetic analysis revealed that loss-of-function mutations in CBP60g and SARD1 increased plant susceptibility to R. solanacearum, but did not enhance RipAW-mediated pathogen growth. Furthermore, growth of the R. solanacearum Δ RipAW null mutant strain was reduced in wild-type plants but restored in cbp60g/sard1 mutant plants, confirming that the promotion of RipAW on bacterial growth is dependent on CBP60g and SARD1. Surprisingly, CBP60g and SARD1 were not involved in R. solanacearum -induced and RipAW-triggered root architecture changes. Overall, our findings demonstrate that RipAW increases plant susceptibility to R. solanacearum via both CBP60g/SARD1-dependent and -independent pathways.

As sessile organisms, plants must constantly survey their surroundings and make appropriate responses in their metabolism or development. Numerous receptors and kinases, as well as phytocytokines that play key roles in signal transduction for a multitude of cues, have been revealed in the past 2 decades. However, the mechanisms coordinating these responses remain poorly understood. Recently, the conserved plant metacaspase family emerged as a versatile switch that plays multiple roles, from early signal perception to downstream propagation, by proteolysis of propeptides or other signaling proteins to mediate their conversion to activated forms. In addition, evidence for proteolysis-independent functions of plant metacaspases has also emerged. In this feature review, we summarize advances in plant metacaspase functions and consider approaches to unravel their complex impacts.

Bacterial wilt caused by Ralstonia solanacearum is one of the most destructive bacterial diseases for which no effective treatment exists. There is an urgent need to understand the basis of resistance against this pathogen in order to engineer efficient strategies in the field. We previously demonstrated that resistant tomato plants limit bacterial movement in the apoplast and the xylem. As a first step to dissect the underlying mechanisms, we analysed the apoplast proteome upon challenge with R. solanacearum in the susceptible tomato cultivar Marmande and the resistant cultivar Hawaii 7996. Here, we described the xylem proteome in these same cultivars and compared it with the apoplastic proteome, revealing variety-dependent and infection-dependent changes. This proteomic analysis led to the identification of pathogenesis-related 1 (PR1) proteins as highly induced upon infection. Since PR1b was the most abundant PR1 protein in both the apoplast and the xylem, we concentrated on this family member to study the role of PR1s in the interaction between tomato and R. solanacearum. Surprisingly, lack of PR1b resulted in enhanced resistance to R. solanacearum in tomato, which could be due to an up-regulation of homologous genes in a compensatory effect as has been reported before. PR1 processing by an unknown protease in tomato results in the generation of the CAPE peptide. Treatment of tomato plants with the CAPE1 peptide resulted in restriction of R. solanacearum growth, via defence gene reprogramming. Future work in the lab will help determine which tomato secreted proteases cleave PR1s to generate CAPEs.

In plants, metacaspases—cysteine proteases—have gained attention for their roles in programmed cell death (PCD). However, to date, their proteolytic activity has not been established as a direct executioner of PCD, analogous to caspases in animals. In this regard, the specific executioners of PCD remain to be identified in plants, leaving the process less well understood than in animals. More recently, metacaspases have also been recognized for their roles in cellular homeostasis. This perspective explores the pro-death and pro-survival roles of plant metacaspases in plant stress responses and development. Under abiotic stress conditions, such as heat, drought or high salinity, metacaspases help maintain protein homeostasis and mitigate damage by regulating processes like the unfolded protein response. In plant immunity, metacaspases have context-dependent pro-death or pro-survival roles. Pro-survival roles include cleavage and generation of immune peptides and regulating immune receptor stability as part of immunocondensates. They have also been shown to tightly regulate immunogenic cell death after pathogen attack, although their mode of action in this context remains elusive. Developmentally, metacaspases participate in key processes that involve PCD, like xylem differentiation and lateral root cap formation, where they help control cellular remodelling. Ultimately, metacaspases are emerging as multifunctional molecules crucial to cellular integrity, immunity, and development. Understanding the balance between cell death and survival pathways in plants is crucial, as it directly impacts crop resilience to environmental stresses and pathogens, ultimately influencing food security and our dependence on plant-based resources.

Regeneration is a unique feature of postembryonic development extensively observed in plants. The capacity to induce regeneration exogenously is limited and usually confined to meristematic-like tissues. We show that bacterial cellulose (BC), but not other structurally similar matrixes, induces postwounding regeneration in nonmeristematic plant tissues via a distinctive route to callus-mediated regenerative programs. The BC-specific program involves cytokinin operating concurrently with strongly activated plant biotic response genes to induce plant regeneration. A reactive oxygen species (ROS) burst, normally associated with defense responses, is sustained upon BC application, involving a network of tightly interconnected transcription factors, where WRKY8, known for regulating stress responses, shows a clustering and hierarchical prevalence. WRKY8 regulates BC-mediated plant regeneration and ROS homeostasis, including superoxide anion accumulation, to potentially promote cell proliferation after wounding. Collectively, our results demonstrate that the cytokinin- and ROS-associated defense responses can be targeted by BC application to promote plant wound regeneration through alternative regenerative programs.

Throughout their life cycle, pathogens are challenged by Reactive Oxygen Species (ROS) and must deploy defence mechanisms against oxidative damage. Environmental stressors such as ultraviolet radiation and desiccation induce intracellular ROS production. Moreover, during pathogen colonisation, plant hosts initiate an oxidative burst, leading to the accumulation of hydrogen peroxide (H2O2). Catalases mitigate ROS toxicity by catalysing the breakdown of H2O2 into water and oxygen. In this study, we explored the roles of the monofunctional catalase (KatE) and the bifunctional catalase-peroxidase (KatG) in the phytopathogen Ralstonia solanacearum during both environmental stress conditions and in planta colonisation stages. Our results demonstrate that both catalases are critical for surviving ROS, with KatG having a more preponderant role. Plant pathogenicity assays show that catalases are not required for virulence although they are important for bacterial fitness in the apoplast. In contrast, we prove that both catalases are vital for R. solanacearum response to oxidative stress in the external environment. KatG was indispensable for survival in soil, as well as for enduring ultraviolet radiation and desiccation exposure. Our findings reveal that the primary function of R. solanacearum catalases is to counteract ROS generated by environmental stressors rather than host-derived oxidative defences. This research identifies specific environmental stressors that these catalases combat during pathogen survival. These insights pave the way for future strategies targeting catalase activity to control bacterial wilt disease.

Vascular wilt diseases, caused by the soilborne pathogen Fusarium oxysporum (Fo), significantly impact agriculture and horticulture. Traditional management strategies are often environmentally harmful and not effective once the pathogen has entered the host. Consequently, understanding the molecular mechanisms underlying resistance to pathogenic Fo strains is crucial for developing novel control strategies. In tomato, resistance to F. oxysporum f. sp. lycopersici (Fol) can be mediated by R genes, such as I-1, I-2 or I-3, or by Fo endophytes. Fol inoculation of resistant lines results in high accumulation of pathogenesis-related 5 (PR-5) proteins. However, the role of xylem-localised PR-5 proteins in Fol resistance in tomato plants remains unknown. Here, we demonstrate that apoplastic fluid enriched with recombinant PR-5x or NP24 exhibits antifungal activity against Fol. Using CRISPR/Cas9-mediated gene editing and overexpression studies, the role of PR-5x and NP24 in disease resistance was studied. Loss-of-function mutations in either PR-5 isoform did not compromise Fol resistance. However, overexpression of NP24 in tomato plants resulted in decreased susceptibility to Fol and surprisingly enhanced susceptibility to Ralstonia solanacearum. The role of PR-5x in Fol resistance remains undetermined as lines overexpressing the transgene could not be identified. Our findings suggest that PR-5 proteins are involved in restricting Fol proliferation in the xylem vasculature and thereby contribute to disease resistance.

Vacuoles are essential for cellular metabolism and growth and the maintenance of internal turgor pressure. They sequester lytic enzymes, ions and secondary metabolites that, if leaked into the cytosol, could lead to cell death. Despite their pivotal roles, quality control pathways that safeguard vacuolar integrity have remained elusive in plants. Here we describe a conserved vacuolar quality control pathway that is activated upon cell wall damage in a turgor-pressure-dependent manner. Cell wall perturbations induce a distinct modification-ATG8ylation-on the vacuolar membrane (tonoplast) that is regulated by the V-ATPase and ATG8 conjugation machinery. Genetic disruption of tonoplast ATG8ylation impairs vacuolar integrity, leading to cell death. Together, our findings reveal a homeostatic pathway that preserves vacuolar integrity upon cell wall damage.

Plants utilize cell surface-localized pattern recognition receptors (PRRs) and intracellular nucleotide-binding leucine-rich repeat (NLR) receptors to detect non-self and elicit robust immune responses. Fine-tuning the homeostasis of these receptors is critical to prevent their hyperactivation. Here, we show that Arabidopsis plants lacking metacaspase 1 (AtMC1) display autoimmunity dependent on immune signalling components downstream of NLR and PRR activation. Overexpression of a catalytically inactive AtMC1 in an atmc1 background triggers severe autoimmunity partially dependent on the same immune signalling components. Overexpression of the E3 ligase SNIPER1, a master regulator of NLR homeostasis, fully reverts the AtMC1-dependent autoimmunity phenotype, inferring that a broad defect in NLR turnover may underlie the severe phenotype observed. Catalytically inactive AtMC1 localizes to punctate structures that are degraded through autophagy. Considering also previous evidence on the proteostatic functions of AtMC1, we speculate that Wt AtMC1 may either directly or indirectly control NLR protein levels, thereby preventing autoimmunity.

AbstractDiverse pathogen effectors convergently target conserved components in plant immunity guarded by intracellular nucleotide‐binding domain leucine‐rich repeat receptors (NLRs) and activate effector‐triggered immunity (ETI), often causing cell death. Little is known of the differences underlying ETI in different plants triggered by the same effector. In this study, we demonstrated that effector RipAW triggers ETI on Nicotiana benthamiana and Nicotiana tabacum. Both the first 107 amino acids (N1‐107) and RipAW E3‐ligase activity are required but not sufficient for triggering ETI on N. benthamiana. However, on N. tabacum, the N1‐107 fragment is essential and sufficient for inducing cell death. The first 60 amino acids of the protein are not essential for RipAW‐triggered cell death on either N. benthamiana or N. tabacum. Furthermore, simultaneous mutation of both R75 and R78 disrupts RipAW‐triggered ETI on N. tabacum, but not on N. benthamiana. In addition, N. tabacum recognizes more RipAW orthologs than N. benthamiana. These data showcase the commonalities and specificities of RipAW‐activated ETI in two evolutionally related species, suggesting Nicotiana species have acquired different abilities to perceive RipAW and activate plant defences during plant–pathogen co‐evolution.

Auxin dictates root architecture via the Auxin Response Factor (ARF) family of transcription factors, which control lateral root (LR) formation. In Arabidopsis, ARF7 regulates the specification of prebranch sites (PBS) generating LRs through gene expression oscillations and plays a pivotal role during LR initiation. Despite the importance of ARF7 in this process, there is a surprising lack of knowledge about how ARF7 turnover is regulated and how this impacts root architecture. Here, we show that ARF7 accumulates in autophagy mutants and is degraded through NBR1-dependent selective autophagy. We demonstrate that the previously reported rhythmic changes to ARF7 abundance in roots are modulated via autophagy and might occur in other tissues. In addition, we show that the level of co-localization between ARF7 and autophagy markers oscillates and can be modulated by auxin to trigger ARF7 turnover. Furthermore, we observe that autophagy impairment prevents ARF7 oscillation and reduces both PBS establishment and LR formation. In conclusion, we report a novel role for autophagy during development, namely by enacting auxin-induced selective degradation of ARF7 to optimize periodic root branching.

Summary Ethylene response factors (ERFs) have been associated with biotic stress in Arabidopsis, while their function in non‐model plants is still poorly understood. Here we investigated the role of potato ERF StPti5 in plant immunity. We show that StPti5 acts as a susceptibility factor. It negatively regulates potato immunity against potato virus Y and Ralstonia solanacearum, pathogens with completely different modes of action, and thereby has a different role than its orthologue in tomato. Remarkably, StPti5 is destabilised in healthy plants via the autophagy pathway and accumulates exclusively in the nucleus upon infection. We demonstrate that StEIN3 and StEIL1 directly bind the StPti5 promoter and activate its expression, while synergistic activity of the ethylene and salicylic acid pathways is required for regulated StPti expression. To gain further insight into the mode of StPti5 action in attenuating potato defence responses, we investigated transcriptional changes in salicylic acid deficient potato lines with silenced StPti5 expression. We show that StPti5 regulates the expression of other ERFs and downregulates the ubiquitin‐proteasome pathway as well as several proteases involved in directed proteolysis. This study adds a novel element to the complex puzzle of immune regulation, by deciphering a two‐level regulation of ERF transcription factor activity in response to pathogens.

Iron is critical during host–microorganism interactions1–4. Restriction of available iron by the host during infection is an important defence strategy, described as nutritional immunity5. However, this poses a conundrum for externally facing, absorptive tissues such as the gut epithelium or the plant root epidermis that generate environments that favour iron bioavailability. For example, plant roots acquire iron mostly from the soil and, when iron deficient, increase iron availability through mechanisms that include rhizosphere acidification and secretion of iron chelators6–9. Yet, the elevated iron bioavailability would also be beneficial for the growth of bacteria that threaten plant health. Here we report that microorganism-associated molecular patterns such as flagellin lead to suppression of root iron acquisition through a localized degradation of the systemic iron-deficiency signalling peptide Iron Man 1 (IMA1) in Arabidopsis thaliana. This response is also elicited when bacteria enter root tissues, but not when they dwell on the outer root surface. IMA1 itself has a role in modulating immunity in root and shoot, affecting the levels of root colonization and the resistance to a bacterial foliar pathogen. Our findings reveal an adaptive molecular mechanism of nutritional immunity that affects iron bioavailability and uptake, as well as immune responses. Microorganism-associated molecular patterns such as flagellin lead to suppression of root iron acquisition through localized degradation of the systemic iron-deficiency signalling peptide Iron Man 1 in Arabidopsis thaliana.

Plant vascular pathogens use different ways to reach the xylem vessels and cause devastating diseases in plants. Resistant and tolerant plants have evolved various defense mechanisms against vascular pathogens. Inducible physico-chemical structures, such as the formation of tyloses and wall reinforcements with phenolic polymers, are very effective barriers that confine the pathogen and prevent colonization. Here, we use a combination of classical histochemistry along with bright-field and fluorescence microscopy and two-dimensional nuclear magnetic resonance (2D-NMR) spectroscopy to visualize and characterize wall reinforcements containing phenolic wall polymers, namely, lignin, ferulates, and suberin, which occur in different xylem vasculature in response to pathogen attack.

Programmed cell death (PCD) is fundamentally important for plant development, abiotic stress responses and immunity, but our understanding of its regulation remains fragmented. Building a stronger research community is required to accelerate progress in this area through knowledge exchange and constructive debate. In this Viewpoint, we aim to initiate a collective effort to integrate data across a diverse set of experimental models to facilitate characterisation of the fundamental mechanisms underlying plant PCD and ultimately aid the development of a new plant cell death classification system in the future. We also put forward our vision for the next decade of plant PCD research stemming from discussions held during the 31st New Phytologist workshop, 'The Life and Death Decisions of Plant Cells' that took place at University College Dublin in Ireland (14-15 June 2023). We convey the key areas of significant progress and possible future research directions identified, including resolving the spatiotemporal control of cell death, isolation of its molecular and genetic regulators, and harnessing technical advances for studying PCD events in plants. Further, we review the breadth of potential impacts of plant PCD research and highlight the promising new applications of findings from this dynamically evolving field.

Cytokinin signalling plays both positive and negative roles in plant resistance to pathogens. It is not clear whether the role of cytokinin changes at the different stages of pathogen infection. Arabidopsis thaliana sequentially exhibits distinct root morphological symptoms during Ralstonia solanacearum infection, which offers a good system to investigate function of cytokinin in the whole pathogen infection process. Using this system, we found increase of cytokinin signalling by Lonely Guy 2 (LOG2) overexpression or depletion of type-A Arabidopsis Response Regulators (ARRs), negative regulators of cytokinin signalling pathway, promoted cell death, wilting symptom and bacterial growth, but attenuated primary root growth inhibition and lateral root formation. The decrease of cytokinin signalling by mutation on Isopentenyl Transferases (IPTs) inhibited root hair formation, cell death, wilting symptom and bacterial colonisation. Application of different concentration of exogenesis 6-benzylaminopurine (6-BA) showed first promoted, then decreased root hair formation. Moreover, application of 6-BA accelerated cell death but suppressed lateral root formation and primary root growth inhibition. The diverse roles of cytokinin in these different root disease phenotypes suggested function of cytokinin during plant responses to R. solanacearum is cell type-specific, which provides new insights on roles of cytokinin signalling in regulation on plant-pathogen interactions.

Protein quality control is an important aspect of stress recovery. It maintains protein homeostasis through a machinery of regulatory proteins such as chaperones and proteases. When the system recognizes accumulation of misfolded or aggregated proteins, the cell recruits a set of regulatory proteins to initiate protein quality control. To understand the dynamics of stress-mediated aggregate protein formation and recovery in plants, robust methods aimed at detecting and measuring such protein aggregates are needed. This will help us to deepen our understanding of protein quality control mechanisms in plants.

Bacterial pathogens exhibit a remarkable ability to persist and thrive in diverse ecological niches. Understanding the mechanisms enabling their transition between habitats is crucial to control dissemination and potential disease outbreaks. Here, we use Ralstonia solanacearum, the causing agent of the bacterial wilt disease, as a model to investigate pathogen adaptation to water and soil, two environments that act as bacterial reservoirs, and compare this information with gene expression in planta. Gene expression in water resembled that observed during late xylem colonization, with an intriguing induction of the type 3 secretion system (T3SS). Alkaline pH and nutrient scarcity-conditions also encountered during late infection stages-were identified as the triggers for this T3SS induction. In the soil environment, R. solanacearum upregulated stress-responses and genes for the use of alternate carbon sources, such as phenylacetate catabolism and the glyoxylate cycle, and downregulated virulence-associated genes. We proved through gain- and loss-of-function experiments that genes associated with the oxidative stress response, such as the regulator OxyR and the catalase KatG, are key for bacterial survival in soil, as their deletion cause a decrease in culturability associated with a premature induction of the viable but non culturable state (VBNC). This work identifies essential factors necessary for R. solanacearum to complete its life cycle and is the first comprehensive gene expression analysis in all environments occupied by a bacterial plant pathogen, providing valuable insights into its biology and adaptation to unexplored habitats.

As a wall polymer, suberin has a multifaceted role in plant development and stress responses. It is deposited between the plasma membrane and the primary cell wall in specialized tissues such as root exodermis, endodermis, phellem, and seed coats. It is formed de novo in response to stresses such as wounding, salt injury, drought, and pathogen attack and is a complex polyester mainly consisting of fatty acids, glycerol, and minor amounts of ferulic acid that are associated to a lignin-like polymer predominantly composed of ferulates. Metabolomic and transcriptomic studies have revealed that cell wall lignification precedes suberin deposition. The ferulic acid esterified to ω-hydroxy fatty acids, synthetized by the feruloyl transferase FHT (or ASFT), presumably plays a role in coupling both polymers, although the precise mechanism is not understood. Here, we use the promoter of tomato suberin feruloyl transferase (FHT/ASFT) fused to GUS (β-glucuronidase) to demonstrate that ferulate deposition agrees with the site of promoter FHT activation by using a combination of histochemical staining and UV microscopy. Hence, FHT promoter activation and alkali UV microscopy can be used to identify the precise localization of early suberizing cells rich in ferulic acid and can additionally be used as an efficient marker of early suberization events during plant development and stress responses. This line can be used in the future as a tool to identify emerging suberization sites via ferulate deposition in tomato plants, which may contribute to germplasm screening in varietal improvement programs.

The intercellular space or apoplast constitutes the main interface in plant-pathogen interactions. Apoplastic subtilisin-like proteases-subtilases-may play an important role in defence and they have been identified as targets of pathogen-secreted effector proteins. Here, we characterise the role of the Solanaceae-specific P69 subtilase family in the interaction between tomato and the vascular bacterial wilt pathogen Ralstonia solanacearum. R. solanacearum infection post-translationally activated several tomato P69s. Among them, P69D was exclusively activated in tomato plants resistant to R. solanacearum. In vitro experiments showed that P69D activation by prodomain removal occurred in an autocatalytic and intramolecular reaction that does not rely on the residue upstream of the processing site. Importantly P69D-deficient tomato plants were more susceptible to bacterial wilt and transient expression of P69B, D and G in Nicotiana benthamiana limited proliferation of R. solanacearum. Our study demonstrates that P69s have conserved features but diverse functions in tomato and that P69D is involved in resistance to R. solanacearum but not to other vascular pathogens like Fusarium oxysporum.