The fourth Machine Learning for Health (ML4H) symposium was held in person on December 15th and 16th, 2024, in the traditional, ancestral, and unceded territories of the Musqueam, Squamish, and Tsleil-Waututh Nations in Vancouver, British Columbia, Canada. The symposium included research roundtable sessions to foster discussions between participants and senior researchers on timely and relevant topics for the ML4H community. The organization of the research roundtables at the conference involved 13 senior and 27 junior chairs across 13 tables. Each roundtable session included an invited senior chair (with substantial experience in the field), junior chairs (responsible for facilitating the discussion), and attendees from diverse backgrounds with an interest in the session's topic.

Information about pretraining corpora used to train the current best-performing language models is seldom discussed: commercial models rarely detail their data, and even open models are often released without accompanying training data or recipes to reproduce them. As a result, it is challenging to conduct and advance scientific research on language modeling, such as understanding how training data impacts model capabilities and limitations. To facilitate scientific research on language model pretraining, we curate and release Dolma, a three-trillion-token English corpus, built from a diverse mixture of web content, scientific papers, code, public-domain books, social media, and encyclopedic materials. We extensively document Dolma, including its design principles, details about its construction, and a summary of its contents. We present analyses and experimental results on intermediate states of Dolma to share what we have learned about important data curation practices. Finally, we open-source our data curation toolkit to enable reproduction of our work as well as support further research in large-scale data curation.

LLMs are vulnerable to hallucinations, and thus their outputs generally require laborious human verification for high-stakes applications. To this end, we propose symbolically grounded generation (SymGen) as a simple approach for enabling easier manual validation of an LLM’s output. SymGen prompts an LLM to interleave its regular output text with explicit symbolic references to fields present in some conditioning data (e.g., a table in JSON format). The references can be used to display the provenance of different spans of text in the generation, reducing the effort required for manual verification. Across a range of data-to-text and question-answering exper- iments, we find that LLMs are able to directly output text that makes use of accurate symbolic references while maintaining fluency and factuality. In a human study we further find that such annotations can streamline human verification of machine-generated text.

In our era of rapid technological advancement, the research landscape for writing assistants has become increasingly fragmented across various research communities. We seek to address this challenge by proposing a design space as a structured way to examine and explore the multidimensional space of intelligent and interactive writing assistants. Through community collaboration, we explore five aspects of writing assistants: task, user, technology, interaction, and ecosystem. Within each aspect, we define dimensions and codes by systematically reviewing 115 papers, while leveraging the expertise of researchers in various disciplines. Our design space aims to offer researchers and designers a practical tool to navigate, comprehend, and compare the various possibilities of writing assistants, and aid in the design of new writing assistants.

Large language models have introduced exciting new opportunities and challenges in designing and developing new AI-assisted writing support tools. Recent work has shown that leveraging this new technology can transform writing in many scenarios such as ideation during creative writing, editing support, and summarization. However, AI-supported expository writing--including real-world tasks like scholars writing literature reviews or doctors writing progress notes--is relatively understudied. In this position paper, we argue that developing AI supports for expository writing has unique and exciting research challenges and can lead to high real-world impacts. We characterize expository writing as evidence-based and knowledge-generating: it contains summaries of external documents as well as new information or knowledge. It can be seen as the product of authors' sensemaking process over a set of source documents, and the interplay between reading, reflection, and writing opens up new opportunities for designing AI support. We sketch three components for AI support design and discuss considerations for future research.

Recent work has shown that infusing layout features into language models (LMs) improves processing of visually-rich documents such as scientific papers. Layout-infused LMs are often evaluated on documents with familiar layout features (e.g., papers from the same publisher), but in practice models encounter documents with unfamiliar distributions of layout features, such as new combinations of text sizes and styles, or new spatial configurations of textual elements. In this work we test whether layout-infused LMs are robust to layout distribution shifts. As a case study we use the task of scientific document structure recovery, segmenting a scientific paper into its structural categories (e.g., "title", "caption", "reference"). To emulate distribution shifts that occur in practice we re-partition the GROTOAP2 dataset. We find that under layout distribution shifts model performance degrades by up to 20 F1. Simple training strategies, such as increasing training diversity, can reduce this degradation by over 35% relative F1; however, models fail to reach in-distribution performance in any tested out-of-distribution conditions. This work highlights the need to consider layout distribution shifts during model evaluation, and presents a methodology for conducting such evaluations.

Scholarly publications are key to the transfer of knowledge from scholars to others. However, research papers are information-dense, and as the volume of the scientific literature grows, the need for new technology to support the reading process grows. In contrast to the process of finding papers, which has been transformed by Internet technology, the experience of reading research papers has changed little in decades. The PDF format for sharing research papers is widely used due to its portability, but it has significant downsides including: static content, poor accessibility for low-vision readers, and difficulty reading on mobile devices. This paper explores the question "Can recent advances in AI and HCI power intelligent, interactive, and accessible reading interfaces -- even for legacy PDFs?" We describe the Semantic Reader Project, a collaborative effort across multiple institutions to explore automatic creation of dynamic reading interfaces for research papers. Through this project, we've developed ten research prototype interfaces and conducted usability studies with more than 300 participants and real-world users showing improved reading experiences for scholars. We've also released a production reading interface for research papers that will incorporate the best features as they mature. We structure this paper around challenges scholars and the public face when reading research papers -- Discovery, Efficiency, Comprehension, Synthesis, and Accessibility -- and present an overview of our progress and remaining open challenges.

The volume of scientific output is creating an urgent need for automated tools to help scientists keep up with developments in their field. Semantic Scholar (S2) is an open data platform and website aimed at accelerating science by helping scholars discover and understand scientific literature. We combine public and proprietary data sources using state-of-the-art techniques for scholarly PDF content extraction and automatic knowledge graph construction to build the Semantic Scholar Academic Graph, the largest open scientific literature graph to-date, with 200M+ papers, 80M+ authors, 550M+ paper-authorship edges, and 2.4B+ citation edges. The graph includes advanced semantic features such as structurally parsed text, natural language summaries, and vector embeddings. In this paper, we describe the components of the S2 data processing pipeline and the associated APIs offered by the platform. We will update this living document to reflect changes as we add new data offerings and improve existing services.

Existing full text datasets of U.S. public domain newspapers do not recognize the often complex layouts of newspaper scans, and as a result the digitized content scrambles texts from articles, headlines, captions, advertisements, and other layout regions. OCR quality can also be low. This study develops a novel, deep learning pipeline for extracting full article texts from newspaper images and applies it to the nearly 20 million scans in Library of Congress's public domain Chronicling America collection. The pipeline includes layout detection, legibility classification, custom OCR, and association of article texts spanning multiple bounding boxes. To achieve high scalability, it is built with efficient architectures designed for mobile phones. The resulting American Stories dataset provides high quality data that could be used for pre-training a large language model to achieve better understanding of historical English and historical world knowledge. The dataset could also be added to the external database of a retrieval-augmented language model to make historical information - ranging from interpretations of political events to minutiae about the lives of people's ancestors - more widely accessible. Furthermore, structured article texts facilitate using transformer-based methods for popular social science applications like topic classification, detection of reproduced content, and news story clustering. Finally, American Stories provides a massive silver quality dataset for innovating multimodal layout analysis models and other multimodal applications.

Despite growing interest in applying natural language processing (NLP) and computer vision (CV) models to the scholarly domain, scientific documents remain challenging to work with. They’re often in difficult-to-use PDF formats, and the ecosystem of models to process them is fragmented and incomplete. We introduce PaperMage, an open-source Python toolkit for analyzing and processing visually-rich, structured scientific documents. PaperMage offers clean and intuitive abstractions for seamlessly representing and manipulating both textual and visual document elements. PaperMage achieves this by integrating disparate state-of-the-art NLP and CV models into a unified framework, and provides turn-key recipes for common scientific document processing use-cases. PaperMage has powered multiple research prototypes of AI applications over scientific documents, along with Semantic Scholar’s large-scale production system for processing millions of PDFs. GitHub: https://github.com/allenai/papermage

Accurately extracting structured content from PDFs is a critical first step for NLP over scientific papers. Recent work has improved extraction accuracy by incorporating elementary layout information, for example, each token’s 2D position on the page, into language model pretraining. We introduce new methods that explicitly model VIsual LAyout (VILA) groups, that is, text lines or text blocks, to further improve performance. In our I-VILA approach, we show that simply inserting special tokens denoting layout group boundaries into model inputs can lead to a 1.9% Macro F1 improvement in token classification. In the H-VILA approach, we show that hierarchical encoding of layout-groups can result in up to 47% inference time reduction with less than 0.8% Macro F1 loss. Unlike prior layout-aware approaches, our methods do not require expensive additional pretraining, only fine-tuning, which we show can reduce training cost by up to 95%. Experiments are conducted on a newly curated evaluation suite, S2-VLUE, that unifies existing automatically labeled datasets and includes a new dataset of manual annotations covering diverse papers from 19 scientific disciplines. Pre-trained weights, benchmark datasets, and source code are available at https://github.com/allenai/VILA.

With the advent of large language models, methods for abstractive summarization have made great strides, creating potential for use in applications to aid knowledge workers processing unwieldy document collections. One such setting is the Civil Rights Litigation Clearinghouse (CRLC) (https://clearinghouse.net),which posts information about large-scale civil rights lawsuits, serving lawyers, scholars, and the general public. Today, summarization in the CRLC requires extensive training of lawyers and law students who spend hours per case understanding multiple relevant documents in order to produce high-quality summaries of key events and outcomes. Motivated by this ongoing real-world summarization effort, we introduce Multi-LexSum, a collection of 9,280 expert-authored summaries drawn from ongoing CRLC writing. Multi-LexSum presents a challenging multi-document summarization task given the length of the source documents, often exceeding two hundred pages per case. Furthermore, Multi-LexSum is distinct from other datasets in its multiple target summaries, each at a different granularity (ranging from one-sentence "extreme" summaries to multi-paragraph narrations of over five hundred words). We present extensive analysis demonstrating that despite the high-quality summaries in the training data (adhering to strict content and style guidelines), state-of-the-art summarization models perform poorly on this task. We release Multi-LexSum for further research in summarization methods as well as to facilitate development of applications to assist in the CRLC's mission at https://multilexsum.github.io.

Layout detection is an essential step for accurately extracting structured contents from historical documents. The intricate and varied layouts present in these document images make it expensive to label the numerous layout regions that can be densely arranged on each page. Current active learning methods typically rank and label samples at the image level, where the annotation budget is not optimally spent due to the overexposure of common objects per image. Inspired by recent progress in semi-supervised learning and self-training, we propose OLALA, an Object-Level Active Learning framework for efficient document layout Annotation. OLALA aims to optimize the annotation process by selectively annotating only the most ambiguous regions within an image, while using automatically generated labels for the rest. Central to OLALA is a perturbation-based scoring function that determines which objects require manual annotation. Extensive experiments show that OLALA can significantly boost model performance and improve annotation efficiency, facilitating the extraction of masses of structured text for downstream NLP applications.

Abstractive summarization systems today produce fluent and relevant output, but often “hallucinate” statements not supported by the source text. We analyze the connection between hallucinations and training data, and find evidence that models hallucinate because they train on target summaries that are unsupported by the source. Based on our findings, we present PINOCCHIO, a new decoding method that improves the consistency of a transformer-based abstractive summarizer by constraining beam search to avoid hallucinations. Given the model states and outputs at a given step, PINOCCHIO detects likely model hallucinations based on various measures of attribution to the source text. PINOCCHIO backtracks to find more consistent output, and can opt to produce no summary at all when no consistent generation can be found. In experiments, we find that PINOCCHIO improves the consistency of generation by an average of 67% on two abstractive summarization datasets, without hurting recall.

Adobe’s Portable Document Format (PDF) is a popular way of distributing view-only documents with a rich visual markup. This presents a challenge to NLP practitioners who wish to use the information contained within PDF documents for training models or data analysis, because annotating these documents is difficult. In this paper, we present PDF Annotation with Labels and Structure (PAWLS), a new annotation tool designed specifically for the PDF document format. PAWLS is particularly suited for mixed-mode annotation and scenarios in which annotators require extended context to annotate accurately. PAWLS supports span-based textual annotation, N-ary relations and freeform, non-textual bounding boxes, all of which can be exported in convenient formats for training multi-modal machine learning models. A read-only PAWLS server is available at https://pawls.apps.allenai.org/, and the source code is available at https://github.com/allenai/pawls.

Recent advances in document image analysis (DIA) have been primarily driven by the application of neural networks. Ideally, research outcomes could be easily deployed in production and extended for further investigation. However, various factors like loosely organized codebases and sophisticated model configurations complicate the easy reuse of important innovations by a wide audience. Though there have been on-going efforts to improve reusability and simplify deep learning (DL) model development in disciplines like natural language processing and computer vision, none of them are optimized for challenges in the domain of DIA. This represents a major gap in the existing toolkit, as DIA is central to academic research across a wide range of disciplines in the social sciences and humanities. This paper introduces LayoutParser, an open-source library for streamlining the usage of DL in DIA research and applications. The core LayoutParser library comes with a set of simple and intuitive interfaces for applying and customizing DL models for layout detection, character recognition, and many other document processing tasks. To promote extensibility, LayoutParser also incorporates a community platform for sharing both pre-trained models and full document digitization pipelines. We demonstrate that LayoutParser is helpful for both lightweight and large-scale digitization pipelines in real-word use cases. The library is publicly available at https://layout-parser.github.io .

We present an algorithm to generate diverse foreground objects and composite them into background images using a GAN architecture. Given an object class, a user-provided bounding box, and a background image, we first use a mask generator to create an object shape, and then use a texture generator to fill the mask such that the texture integrates with the background. By separating the problem of object insertion into these two stages, we show that our model allows us to improve the realism of diverse object generation that also agrees with the provided background image. Our results on the challenging COCO dataset show improved overall quality and diversity compared to state-of-the-art object insertion approaches.

Generative Adversarial Networks have shown promise in unpaired image translation. However, translating unpaired objects from unaligned domains is an unsolved problem. Existing methods are restricted to domain pairs which require only minor shape change, and they typically mode collapse on more challenging domain pairs such as giraffe to sheep, or racket to bat. First, with a simple toy dataset, we show that existing image translation models are inherently unequipped to handle significant shape change because they fail to disentangle the foreground and background. We present a novel method and network architecture to address this issue. The effectiveness of our network is confirmed by a user study, where we are preferred 2× over the SOTA. However, even our improved baseline suffers from instability on these diverse domains. Thus, we explore various multi-scale architectures. Additionally, we improve the efficiency of our networks because previous methods are highly resource intensive and require long training times. We then design a transformer-based network that is not limited by receptive field, as convolutions are. This enables it to make significant global changes to the object shape. We separate the shape and color translation problems so that we can utilize transformer-based models. Effectively, we translate shapes as if they were sentences. We find this enhances the quality and stability of the shape translations and explore ways our transformer representations can be combined with color networks.