As a medicinal and edible homologous plant, Hibiscus manihot L. contains abundant flavonoids (HF) as its primary bioactive components, which exert potent antioxidant, anti-inflammatory, and hepatoprotective activities. However, its ameliorative effect on acute liver injury (ALI) and the underlying mechanism remain unclear. The present study aims to investigate the protective effect and potential mechanism of HF against acute liver injury (ALI). The experimental model was based on LPS-induced ALI in mice and assessed liver damage through serum biochemical parameters, oxidative stress markers, inflammatory cytokines, and histopathological evaluation. To elucidate the hepatoprotective mechanisms of HF against ALI, systemic investigations were conducted using 16S rRNA sequencing, metabolomics, and transcriptomics. Key genes and proteins in relevant signaling pathways were subsequently validated by qRT-PCR and Western blot analyses. HF administration conferred significant protection against liver injury, as evidenced by improved function, reduced oxidative and inflammatory markers, and ameliorated histopathology. Mechanistically, HF was found to regulate glycerophospholipid metabolism, as evidenced by reduced levels of phosphatidylcholine (PC) and lysophosphatidylcholine (LPC). The TLR2/MAPK signaling pathway emerged as the primary enrichment target of differentially expressed genes in transcriptomic analysis. Moreover, HF promoted gut microbiota homeostasis, primarily through restoring the abundance of Ligilactobacillus and Akkermansia. HF is shown to alleviate ALI in mice based on these findings.

In this work, the fermentation process of Bingguo wine (BW) was systematically optimized using Bingguo fruit and licorice as raw materials. Single-factor tests combined with response surface methodology were adopted, taking alcohol content and sensory evaluation score as the core assessment indices. Volatile flavor substances in Bingguo, BW, and licorice Bingguo wine (BGW) were identified and quantified via gas chromatography-mass spectrometry (GC-MS). The discrepancies in volatile profiles and key odor-active constituents among the three samples were further explored by partial least squares-discriminant analysis (PLS-DA) and relative odor activity value (ROAV) analysis. The optimal technological parameters for BGW preparation were confirmed as follows: fermentation temperature of 20°C, fermentation time of 7 days, initial sugar content of 24 °Bx, and licorice supplementation level of 0.12%. Under these optimized conditions, the alcoholic strength of BGW reached 6.3% vol. In total, 335, 95, and 103 volatile components were identified in Bingguo, BW, and BGW, respectively. ROAV results demonstrated that ethyl hexanoate, ethyl acetate, and ethyl butyrate served as the shared key aroma-active compounds in both fermented wines. Significantly, the concentration of acetic acid in BGW was drastically elevated compared with that in BW, which endowed BGW with a unique sweet-sour taste profile that was clearly different from conventional BW.

Potato leaves are an abundant by-product of potato production. Although they contain steroidal glycoalkaloids (SGAs) and other bioactive metabolites, the chemical composition of SGA-enriched leaf extracts and the impact of purification steps remains insufficiently described. Here, we aimed to profile and compare a crude SGA-enriched extract and a C18 solid-phase extraction (SPE)-purified fraction obtained from potato leaves. LC–MS/MS-based untargeted metabolomics annotated 1,761 metabolites across the two extracts, including terpenoids (6.94

Morus mongolica holds significant value in medicinal applications, livestock fodder production, and ecological restoration. Although polyploidization is well-documented in plants for enhancing stress tolerance and altering nutrient composition, the specific beneficial traits conferred by genome duplication in M. mongolica have not yet been fully characterized. Our results demonstrated that a 72 h preculture followed by 72 h of colchicine treatment (30 mg·L−¹), yielded a tetraploid rate of 25

The PADRE (Pathogen and abiotic stress response, cadmium tolerance, disordered region-containing) family of genes, which contains the structural DUF4228 domain of unknown function (DUF), has been reported to be associated with plant responses to abiotic stresses. However, the specific functions of this family in the salt stress response remain unknown. AtPADRE13 is induced by salt stress and ABA (abscisic acid). After the overexpression of AtPADRE13 in Arabidopsis, seeds were found to be insensitive to ABA treatment. After salt treatment, the overexpression lines presented a significantly lower survival rate, increased MDA (Malondialdehyde) content, and reduced antioxidant enzyme activities compared with the wild-type, and were more sensitive to salt stress. Transcriptome data analysis further revealed that AtPADRE13 overexpression resulted in different degrees of down-regulation for a series of positive regulators related to ABA catabolism, transport, and their mediated plant responses to salt stress. In addition, the expression of genes related to ROS (reactive oxygen species) scavenging was down-regulated. In conclusion, AtPADRE13 plays a negative regulatory role in the response to salt stress in Arabidopsis.

In northern China’s arid and semi-arid regions, evergreen trees demonstrate significant cold tolerance to natural low-temperature stress during winter. However, the metabolic strategies and their associated properties underlying their overwintering adaptation remain incompletely elucidated. This study aims to reveal the metabolic properties of natural low-temperature adaptation strategies in five evergreen trees through metabolomic analysis and to identify key metabolites and their dynamic variation patterns. The GC-TOF-MS platform was used to investigate seasonal differential metabolites in five evergreen trees across January, April, July, and October and further explore core differentially expressed metabolites responsive to low-temperature stress. The results demonstrated that the seasonal changes in the chlorophyll content of five evergreens exhibited distinct patterns, that significant differences were observed between Juniperus sabina L. and Picea meyeri R., Ammopiptanthus mongolicus M., Buxus sinica var. parvifolia M.Cheng, and Pinus tabuliformis C., and that no significant differences were found among the other tree species. A total of 427 metabolites were detected in the metabolome; when assessing seasonal dynamics, it was found that the types of differentially expressed metabolites in the five evergreens underwent significant changes. In spring, the differentially expressed metabolites included some carbohydrates, alcohols, organic acids, and lipids. During summer and autumn, the largest number of differentially expressed metabolites accumulated, mainly including carbohydrates, organic acids, and amino acid compounds. In winter, while Picea meyeri primarily accumulated carbohydrates, the remaining four species mainly accumulated organic acids, along with a small number of alcohols, phenylpropanoids, and polyketides. Three shared carbohydrate metabolites, L-threose, galactinol, and gluconic lactone, were commonly downregulated across all species. Additionally, coniferous trees collectively accumulated 3,6-anhydro-D-galactose, showing downregulation. The KEGG enrichment analysis of winter-accumulated metabolites revealed significant associations with the pentose phosphate pathway, amino acid metabolism, phenylpropanoid biosynthesis, the tricarboxylic acid cycle, and ascorbate–aldarate metabolism pathways. Through comparative analysis with the summer growth season, we ultimately identified the core differentially expressed metabolites of the five evergreens, providing potential metabolic markers for the breeding of cold-tolerant species. In summary, these findings provide critical metabolomic insights into how plants adapt to low temperatures, significantly enhancing our understanding of the metabolic foundations of cold tolerance in evergreen species.

Seed vigor significantly impacts seed production and storage. Enhancing seed vigor is a pivotal goal in sweet corn breeding, as improved seed sowing quality is crucial for agricultural development, aiding in better resilience against storage adversities and facilitating long-term germplasm preservation. In this study, a recombinant inbred line (RIL) population, including 158 families, was derived from the aging-tolerant line K62 and the aging-sensitive line K107. Utilizing SNP arrays, genotypes were identified, and a genetic linkage map was constructed. Composite interval mapping was employed to detect quantitative trait loci (QTLs) associated with five seed vigor traits, namely the seedling fresh weight (SFW), germination potential (GP), germination rate (GR), germination index (GI), and vigor index (VI), at three days after artificial aging treatment. Upon analysis, a total of 42 QTLs affecting seed vigor indices were identified over two years. Of these, six were linked to SFW, while the GP, GR, GI, and VI each comprised nine QTLs. Nine QTL clusters were identified, with significant contributions (>10%) from Loci02.1, Loci05.2, Loci06.1, and Loci10.1, ranging from 9.50% to 24.20%, 8.89% to 11.54%, 9.16% to 15.55%, and 7.54% to 17.77%, respectively. Candidate genes were explored within QTL cluster regions based on the aging-induced transcriptomic sequencing data of K62 and K107. Through Gene Ontology enrichment, gene annotation, and expression profiling clustering analyses, 12 positive candidate genes linked to seed aging tolerance were identified. This study provides a foundational understanding of the genetic mechanisms of seed aging tolerance and the innovation of an elite germplasm for seed aging tolerance in sweet corn.

Trehalose is widely involved in growth, development, metabolic regulation, as well as stress resistance of many angiosperms. Whether it plays roles in stress tolerance of gymnospermae had not been evaluated. Larix gmelinii, which is a native afforestation conifer in north China, shows strong drought-tolerance in Pinaceae family. Here, the role of trehalose in abiotic stress tolerance of Larix gmelinii were analyzed. Results showed that trehalose pretreatment at 30 mM achieved the best protection on L. gmelinii seedlings, with an obviously increase in antioxidant enzymes activity and chlorophyll content, and a decrease in MDA content. Trehalose pretreatment lowered the transcript level of genes related to starch and sucrose metabolism, but elevated the content of sucrose, starch and trehalose in L. gmelinii seedlings. Altogether 8 LgTPS and 2 LgTPP genes were selected from the transcriptome. Most LgTPSs and LgTPPs were induced by drought, cold, or salt stress. Overexpression of both LgTPS1.1 and LgTPPI in A. thaliana enhanced tolerance of the transgenic lines to salt stress. Overall, our results showed that the trehalose metabolism pathway was also one of the key pathways to combat abiotic stress in L. gmelinii, and this work will shed light on further related study in other conifers.

The Korshinsk peashrub (Caragana korshinskii), known for its exceptional drought tolerance, is widely cultivated in arid and semi-arid regions for vegetation restoration and as a vital forage plant. To elucidate the genomic basis of its drought tolerance, we generated a chromosomal-scale genome sequence of C. korshinskii. Our synteny analysis disputes the previously hypothesized genus-specific whole-genome duplication event, as suggested by earlier transcriptome study of this species and its congeners. We identified that tandem duplications were critical for the expansion of gene families, such as early light-induced protein, heat shock protein 100, and Dehydrin, which are involved in cellular protection processes. These expansions are likely pivotal to the superior drought tolerance observed in C. korshinskii, as evidenced by the elevated gene expression of these genes under drought conditions. Furthermore, overexpression studies of seven tandemly duplicated DHN genes revealed a substantial enhancement in drought survival rates of seedlings, likely attributable to increased gene dosage effects. Conversely, gene silencing via virus-induced gene silencing demonstrated opposing effects. Additionally, we have established the CakorDB, a genomic resource database for C. korshinskii (https://bis.zju.edu.cn/cakordb/), accessible freely to the scientific community. Collectively, our study not only provides a valuable genomic resource for the Korshinsk peashrub but also highlights the genetic adaptations that enable C. korshinskii to thrive in desert environments, positioning its stress-responsive genes as a valuable genetic reservoir for breeding drought-resistant crops.

Caragana intermedia is a perennial shrub species in the genus Caragana (Fabaceae), demonstrating remarkable stress resistance and adaptability. However, research on its somatic embryogenesis (SE) and genetic transformation techniques remains limited. In this study, we established an SE system by utilizing immature cotyledons isolated from young C. intermedia seeds. Our findings demonstrated that the immature cotyledons at 6–7 weeks after flowering (WAF) were the best explants for SE. The optimal embryo induction medium consisted of an MS basal medium supplemented with 5 mg/L α-naphthaleneacetic acid (NAA), 3 mg/L 6-benzylaminopurine (6-BA), 30 g/L sucrose, 7 g/L agar, and 500 mg/L hydrolyzed casein. Cotyledon-stage embryos germinated on a half-strength MS medium, exhibiting a 34.36% germination rate. Based on the SE system, we developed a preliminary genetic transformation system using the RUBY reporter gene, which successfully generated transgenic calli and cotyledon-stage embryos. The establishment of the SE system is expected to shorten breeding cycles, facilitate propagation of superior cultivars, and support large-scale industrial applications in C. intermedia. Furthermore, the stable transformation system provides a platform for molecular breeding and gene function verification.

The enhancement of cellulose degradation is important for improving the quality of corn-stalk silage. However, the rapid drop in pH caused by the propagation of lactic acid bacteria (LAB) can influence the degradation of cellulose by cellulose-degrading microorganisms (CDMs) during the mixed fermentation process of ensilage. In this study, a CDM (Bacillus methylotrophic 2–4, BM 2–4) was isolated, and its lyophilization condition was studied. Moreover, a slow-release strategy was developed to delay the release of LAB (Lactobacillus plantarum S-1, LP S-1) by embedding technology to provide time for BM 2–4 to degrade cellulose during the corn-stalk ensilage process. The results showed that BM 2–4 had a higher survival rate (89.53%) under the following conditions: cell collection (5,600 r/min in 4.4°C for 9.5-min centrifugation) and lyophilization using cryoprotectants [skim milk (10.4%), peptone (10.4%), and glucose (5.2%)] at −50°C with a vacuum pressure of <10 Pa. Based on the results of the previous study on embedded LP S-1, simultaneous inoculation of embedded LP S-1 and lyophilized BM2-4 at a 2:1 ratio, with an inoculum size of 6% and moisture content of 85%, significantly degraded CF by 3.8% and increased CP by 3.7% (p < 0.05). This treatment did not significantly influence the final pH of corn-stalk silage (p > 0.05) after 7 days of fermentation.

The Abiotic Stress Gene (Asg) family, unique to plants, includes members with the DUF1005 domain of unknown function (DUFs). Although earlier studies have associated members of the Asg gene family and various aspects of plant growth, development, and reactions to abiotic stress, their precise biological roles and underlying mechanisms are not yet well understood. This research found that Asg2 functions not only in regulating root development but also serves as an inhibitor in how the plant responds to salt stress. Overexpression of Asg2 enhances primary root elongation, while gene-edited mutants display the opposite effect. Under salt stress conditions, Arabidopsis lines with increased Asg2 expression exhibit inhibited primary root elongation, reduced seed germination rates, and heightened sensitivity of leaves and seedlings to salt stress. These changes coincide with increased electrolyte leakage, reduced chlorophyll content, decreased antioxidant enzyme activity, and elevated levels of reactive oxygen species (ROS). Transcriptomic analysis revealed that overexpression of Asg2 under salt stress leads to the downregulation of stress resistance genes, thereby increasing sensitivity to salt stress. In conclusion, this research emphasizes the important function of the Asg gene in influencing salt tolerance, providing a foundational framework and genetic resource for comprehending how plants respond to salt stress.

Zika virus (ZIKV) infection can result in a birth defect of the brain called microcephaly and other severe fetal brain defects. ZIKV enters the susceptible host cells by endocytosis, which is mediated by the interaction of the envelope (E) glycoprotein with cellular surface receptor molecules. However, the cellular factors that used by the ZIKV to gain access to host cells remains elusive. Here, we report that the extracellular domain of integrin beta 4 (ITGB4) is an entry factor of ZIKV. ITGB4 mediates ZIKV infection by directly interacting with the E glycoprotein of ZIKV, and ITGB4 knockout hampers the binding and replication of ZIKV to host cells. A functional monoclonal antibody against ITGB4 or the soluble forms of ITGB4 could decrease the binding and infection of ZIKV to permissive cell lines. Importantly, the ITGB4 antibody blocks the infection of ZIKV to mouse placenta, thus protecting the fetuses from ZIKV infection. Together, our study has demonstrated that ZIKV infection involves ITGB4 dependent binding.

BACKGROUND:Larix gmelinii is an excellent stress resistant coniferous tree species with a wide distribution and important economic and ecological value. However, at seedling stage, L. gmelinii is extremely susceptible to abiotic stresses, and systematic research on the adaptation mechanisms of L. gmelinii seedlings to abiotic stress is still lacking. RESULTS:Phenotypic observation and physiological index detection showed that L. gmelinii seedlings wilted with needles withered and yellowish at later stages of drought and salt stress; Under low temperature, the seedlings grew slowly and turned red at later stage. Under all 3 abiotic stresses, the chlorophyll content in seedlings significantly decreased, while the MDA content significantly increased; The activity of SOD and CAT showed a trend of increasing first and then decreasing. Transcriptome analysis revealed that DEGs were mainly involved in carbohydrate and amino acid metabolism, phenylpropanoid biosynthesis, and flavonoid synthesis metabolism. Metabolomic analysis found unique DAMs under 3 stress treatments. The combined analysis of transcriptome and metabolome showed that the changing patterns of DEGs and DAMs in primary and secondary metabolism were consistent: carbohydrate were significantly accumulated under low temperature stress; amino acids showed the most significant changes under salt stress. The variation pattern of secondary metabolism was similar under both drought and salt stress, while anthocyanin accumulation was the most obvious only under low temperature stress. CONCLUSION:Our study provides insightful information about the different mechanisms that L. gmelinii seedlings employ in response to drought, low temperature or salt stress.

Leaf senescence is essential for the growth and development of deciduous trees in the next season. Larix gmelinii, a deciduous coniferous tree, exhibits its most distinctive feature by turning yellow in the autumn and eventually shedding its leaves, resulting in significant changes in its appearance during the fall. Lysine acetylation plays an important role in diverse cellular processes; however, limited knowledge is available regarding acetylations in the needle senescence of L. gmelinii. In this study, the proteomics and acetylated modification omics of two phenotypic leaves, yellow and green (senescent and non-senescent) needles, were analyzed before autumn defoliation. In total, 5022 proteins and 4469 unique acetylation sites in 2414 lysine acylated proteins were identified, and this resulted in the discovery of 1335 differentially expressed proteins (DEPs) and 605 differentially expressed acetylated proteins (DAPs) in yellow versus green needles. There are significant differences between the proteome and acetylome; only 269 proteins were found to be DEP and DAP, of which 136 proteins were consistently expressed in both the DEP and DAP, 91 proteins were upregulated, and 45 proteins were down-regulated. The DEPs participate in the metabolism of starch and sucrose, while the DAPs are involved in glycolysis and the tricarboxylic acid cycle. Among them, DEPs underwent significant changes in glycolysis and citric acid cycling. Most of the enzymes involved in glycolysis and the citrate cycle were acetylated. DAPs were down-regulated in glycolysis and up-regulated in the citrate cycle. In all, the results of this study reveal the important role of lysine acetylation in the senescence of L. gmelinii needles and provide a new perspective for understanding the molecular mechanism of leaf senescence and tree seasonal growth.

Background: Caryopteris mongolica Bunge (CM) shows promising potential for managing rheumatoid arthritis (RA) and digestive disorders, attributed to its rich content of bioactive compounds such as polyphenols and flavonoids. Despite its common use in herbal tea, the specific mechanisms underlying CM’s anti-inflammatory and joint-protective effects remain unclear, limiting its development as a functional food. This study investigated the effects of aqueous CM extract on RA in collagen-induced arthritis (CIA) rats and explored the underlying mechanisms. Methods: Forty-eight female Sprague-Dawley rats were randomly assigned to six groups (n = 8): normal control, CIA model, methotrexate (MTX), and CM high-, middle-, and low-dose groups. Anti-inflammatory and joint-protective effects were evaluated using biochemical and histological analyses. To elucidate the mechanisms, we applied metabolomics, network pharmacology, and transcriptomics approaches. Results: The results demonstrated that CM extract effectively suppressed synovial inflammation in CIA rats, reducing joint degradation. CM’s anti-inflammatory effects were mediated through the TNF signaling pathway, modulating glycerophospholipid and amino acid metabolism, including reduced levels of tryptophan, LysoPC, and asparagine. Molecular docking identified scutellarin and apigenin as key bioactive compounds. Additionally, immunofluorescence analysis revealed CM’s therapeutic effects via TNF signaling inhibition and suppression of M1 macrophage polarization. Conclusions: These findings highlight the therapeutic potential of CM for RA and support its development as a functional food or pharmaceutical product.

The WRKY transcription factor family plays a vital role in plant development and environmental response. However, the information of WRKY genes at the genome-wide level is rarely reported in Caragana korshinskii. In this study, we identified and renamed 86 CkWRKY genes, which were further classified into three groups through phylogenetic analysis. Most of these WRKY genes were clustered and distributed on eight chromosomes. Multiple sequence alignment revealed that the conserved domain (WRKYGQK) of the CkWRKYs was basically consistent, but there were also six variation types (WRKYGKK, GRKYGQK, WRMYGQK, WRKYGHK, WKKYEEK and RRKYGQK) that appeared. The motif composition of the CkWRKYs was quite conservative in each group. In general, the number of WRKY genes gradually increased from lower to higher plant species in the evolutionary analysis of 28 species, with some exceptions. Transcriptomics data and RT-qPCR analysis showed that the CkWRKYs in different groups were involved in abiotic stresses and ABA response. Our results provided a basis for the functional characterization of the CkWRKYs involved in stress resistance in C. korshinskii.

Lodging greatly reduces maize (Zea mays L.) grain yield and harvest efficiency. We conducted a 3-year (2018-2020) field experiment in Fengcheng city, Liaoning, China to investigate the effects of maize seedling defoliation on lodging resistance and grain yield. Two cultivars, Liangyu99 and Hongshuo, were tested without (control treatment) and with defoliation at seedling stage (V4 stage: DS treatment). Compared with the control, DS significantly (p < 0.05) decreased stalk lodging by 63.2%-77.9% and 51.0%-75.1%, contributing to the increase in grain yield by 4.94%-7.76% and 9.75%-19.6% for Liangyu99 and Hongshuo, respectively, during 2018-2020. The improvement of maize lodging resistance by seeding defoliation was mainly due to changes in plant morphology. On average, 12.0% and 21.9% declines in plant and ear heights, respectively, were observed and the number of internodes below the ear was reduced by 1-2 units for both cultivars with DS. A comparison of cultivars revealed that the increase in grain yield with defoliation was approximately twofold greater for Hongshuo than for Liangyu99. The greatest yield increase due to seedling defoliation was observed in 2018, when the yield was lowest with the nontreated control. However, in environments where lodging is less common, suppression of early vegetative growth would probably make little, if any, contribution to maize yield. These results suggest that defoliation of maize seedlings could be a profitable agronomic practice for maize grown in areas that experience frequent lodging.

Astragalus membranaceus (A. membranaceus) is a homologous plant with high medicinal and edible value. Therefore, the extraction methods of Astragalus polysaccharide (APS) have attracted the attention of many research groups, but the yield of the active components is still not high. The aim of this study was to extract APS by a semi-bionic extraction method, optimize the extraction process, and evaluate the anti-aging activities of APS in vivo. The results showed that the APS yield was 18.23% when extracted by the semi-bionic extraction method. Anti-aging evaluation in rats showed that APS extracted by this method significantly decreased the malondialdehyde (MDA) content and increased superoxide dismutase (SOD) activity to cope with D-galactose-induced aging. Serum metabolomic analysis indicated that a total of 48 potential biomarkers showed significant differences, mainly involving 5 metabolic pathways. These altered metabolic pathways were mainly related to energy metabolism, amino acid metabolism, and lipid metabolism. These results indicated that the semi-bionic extraction method can effectively improve the yield of APS, and the extracted APS exhibited anti-aging activity in rats. Our study provided a novel and effective method to extract APS and indicated that APS can be used as functional food and natural medicine to delay aging and prevent its complications.