Using a combination of physicochemical methods (dynamic and electrophoretic light scattering (DLS and ELS, respectively), nanoparticle tracking analysis, atomic force and transmission electron microscopy (AFM and TEM, respectively), UV spectroscopy, conductometry, pH-metry, dielcometry), it was found that dilute solutions of a multicomponent drug immunomodulator polyoxidonium (PO) are nanoheterogeneous disperse systems, with their disperse phase undergoing considerable restructurings when diluting the solution in the range of calculated concentrations from 1∙10–1 to 1∙10–16 mg mL–1, which is reflected in the non-monotonous concentration dependencies of specific electroconductivity, dielectric permittivity, and pH of the solutions. Using ELS, AFM, TEM, and UV spectroscopy methods, it was found that the disperse phase with a size of hundreds of nanometers which forms at concentrations of ≤1∙10–5 mg mL–1, contains organized water structures substantiating the negative values of ζ-potential, which vary non-monotonously from–5 to–16 mV. Radioprotective properties of dilute solutions of PO (1∙10–1 and 1∙10–9 mg mL–1) were demonstrated for the first time when exposing the test mutant bacterial strain Salmonella typhimurium TA 100 (Ames test) to X-ray radiation in a dose of 7.50 mGy used for medical diagnostics.

A number of 2-methylthio-6-methyl-4-alkyl- and alkylaminopyrimidines, as well as their salts produced by the reaction with methyl p -toluenesulfonate and trifluoroacetic acid, were investigated. The quantum chemical and experimental IR and Raman spectral methods were used to determine the preferential isomeric forms of the molecules of studied compounds, whose convenient spectral markers were revealed. The starting pyrimidines and their salts were found to exist predominantly as an amino form. The salt formation proceeds via the methylation (protonation) of the N 1 atom of pyrimidine ring.

Reaction of α,ω-bis(3,6-dimethyl-2,4-dioxo-1,2,3,4-tetrahydropyrimidin-1-yl)alkanes with paraformaldehyde leads to pyrimidinophanes, which contain four 3,6-dimethyluracil fragments, connected to each other by the methylene chains. A comparative study of intra- and intermolecular interactions of “open” and macrocyclic uracil derivatives in the crystal state and in solution was performed. According to the NMR spectroscopy data, there is no self-association of “open” and macrocyclic compounds in chloroform solutions, whereas the X-ray data revealed the intermolecular π-π contacts between the 3,6-dimethyluracil fragments in the crystals of these compounds. Conclusions on the presence of intramolecular interactions in chloroform solutions of α,ω-bis(3,6-dimethyl-2,4-dioxo-1,2,3,4-tetrahydropyrimidin-1-yl)alkanes and pyrimidinophanes were made based on the UV spectra, which were interpreted in terms of hypo- and hyperchromic effects relatively to the model uracil derivative. These conclusions correlate with the X-ray data: there are no intramolecular π-π contacts between the 3,6-dimethyluracil fragments both in the crystals and in solutions of “open” compounds, positions of these fragments relatively to each other in the molecules of pyrimidinophanes are defined by the lengths of the polymethylene bridges. The intramolecular stacking effect between the opposite uracil rings is observed for the macrocycles with trimethylene and hexamethylene chains, whereas there is no such interactions in pyrimidinophanes with tetramethylene chains.

Bis(hydroxymethyl)phosphinic acid and melamine were shown by FTIR and UV spectroscopy to form the salt (melafen), whose cations and anions involving water molecules can be joined into supramolecular structures due to electrostatic interactions and hydrogen bonds. The conductometry, dielcometric titration, and dynamic light scattering methods showed that melafen in water and chloroform in a concentration range of 10−10–10−4 mol L−1 involving the solvent structures exist as supramolecular polymeric nanostructures, whose size and properties change nonlinearly depending on the melafen concentration.

Molecular structure and vibrational spectra of 2-trichloromethyl(ethoxycarbonyl)-1-nitroethenes and 2-trichloromethyl(ethoxycarbonyl)-1-bromo-1-nitroethenes were calculated in terms of the density functional theory (B3LYP/6-31G*). The experimental FTIR spectra of these compounds in the range from 4000 to 400 cm −1 were interpreted in detail on the basis of the calculation data. 2-Substituted 1-nitro- and 1-bromo-1-nitroethenes were assigned the structure with trans orientation of the nitro and trichloromethyl (or ethoxycarbonyl) groups, and the ethoxycarbonyl derivatives were assumed to exist in equilibrium between s-cis and s-trans conformers.

Complexes of copper(II) bromide with cyclic and isostructural acyclic phane ligands containing derivatives of pyrimidine nucleobases (cytosine and uracil) were synthesized and characterized. In two cyclic pyrimidinophanes used, the macrocycles included two 6-methylthiocytosine and one 6-methyluracil units linked by polymethylene chains (L3) and two 6-methyluracil units linked by N-containing bridges (L5). Ligand L3 and its isostructural acyclic analogs are coordinated by the Cu2+ ion through the same donor sites (the ring N atoms of the thiocytosine units). The coordination polyhedra of the Cu atom in complexes with cyclic and acyclic ligands are different. Ligand L5 and its isostructural acyclic analog also form copper(II) complexes with different coordination polyhedra involving different donor sites. The acyclic ligand is coordinated by the Cu2+ ion via the bridging N atom, while cyclic ligand L5, via the uracil CO groups (the bridging N atoms become protonated). The resulting complexes are dielectrics.

Aggregation of amphiphilic calix[4]resorcinarenes (CRA) modified by carboxymethyl (1), 2-hydroxyethyl (2), methylamino acetal (3), and aminomethyl (4) fragments and their interaction with some synthetic (5, 6) and natural (7, 8) surfactants in the low-polarity solvent (chloroform) were studied by permittivity measurements and FT-IR spectroscopy. Compounds 1–4 and surfactants form aggregates at critical micelle concentrations (CMC) of 2.0·10−5–7.5·10−5 and 1.7·10−5–2.0·10−3 mol L−1, respectively. The CMC values of CRA—surfactant mixed aggregates depend on the surfactant structure and the structure and concentration of CRA. Analysis of the IR spectra of solutions of a series of amphiphilic CRA (2–4, 9, 10) and their mixtures with the cationic surfactant N-cetyl-N,N-dimethyl-N-(2-hydroxyethyl)ammonium bromide (5) showed that an increase in the concentration of the solutions in individual and mixed systems is accompanied by a decrease in the molar integral intensities and intensities in the maxima of the absorption bands of the O—H and C—H bonds down to the CMC point, after which these values change slightly. The discovered effect, which is differently pronounced for all systems studied, indicates that both the polar “head” groups and nonpolar fragments of CRA and surfactant are involved in the formation of supramolecules of the reverse micelle type in all cases.

A method for the synthesis of new calix[4]resorcinols tetra-3,5-di-tert-butyl-4-hydroxybenzyl derivatives is developed. Their interaction with methyldichlorophosphonate, dimethyldichlorosilane in the presence of a base leads to formation of organophosphorus-organosilicon cavitands. Acetylation of hydroxybenzylated calix[4]resorcinols with acetic anhydride leads to products of either incomplete or full acetylation depending on experimental conditions.

Intra-and intermolecular interactions in acyclic compounds containing nucleotide base (uracil and thymine) derivatives and their macrocyclic analogs (pyrimidinophanes) were studied by IR, UV, luminescence, and NMR spectroscopy. Molecules of these compounds include one or two N 3 -methylsubstituted or N 3 -unsubstituted uracil fragment or two adenine fragments linked through a hexamethylene spacer to an uracil, 5,5′-methylenediuracil or diphenylmethane fragment. The examined compounds almost all are characterized by π-π interactions and intramolecular hydrogen bonding between the terminal uracil or adenine fragments. Intramolecular association constants were determined and factors affecting them were discussed. Complex formation of acyclic and macrocyclic ligands with adenine and thymine derivatives was studied. The low values of the association constants were interpreted in terms of a competition between intra-and intermolecular bonding and very labile ligand structure.

The oxidative dehydrocyclization of the 3-(indolizin-2′-yl)-2-oxoquinoxaline monopodand performed either electrochemically or under the action of molecular iodine affords new redox-active heterocyclophane consisting of the redox-switchable biindolizine fragment combined with the polyether-bridged π-deficient quinoxaline systems. The single-crystal X-ray diffraction study showed that the trioxaundecane chain of heterocyclophane adopts an extended conformation, and one of the phenyl substituents of the molecule closes the pseudocavity formed by the spacer from one of the sides. The cyclic voltammetric study of heterocyclophane in MeCN and DMF showed the three-step oxidation of the indolizine fragments accompanied by the single-electron transfer in each step. The first and third steps are reversible, and the second step is irreversible. The oxidation at potentials of the first peak gives rise to stable radical cations detected by the ESR method ( g = 2.0024, a 2N = 0.26 mT).

2,4,6-Tris(3,5-di-tert-butyl-4-hydroxybenzyl)resorcinol in the crystal and in solution has a similar steric structure, favorable for its performance as peroxyl radical scavenger.

Acyclic and macrocyclic compounds having different numbers of pyrimidine fragments and nitrogen atoms in the polymethylene bridges or in substituents at the pyrimidine rings reacted with 2,3,5,6-tetrachloro-1,4-benzoquinone and 1,4-benzoquinone according to the charge transfer scheme to give products with an ionic structure. The reaction was accompanied by protonation of nitrogen atoms in the polymethylene bridges or in substiuents at the pyrimidine rings and reduction of 2,3,5,6-tetrachloro-1,4-benzoquinone or 1,4-benzoquinone to 2,3,5,6-tetrachlorobenzene-1,4-diol or benzene-1,4-diol, respectively. The isolated products are dielectrics.

The reactions of 1,3-bis(5-bromopentyl)-5-methyl-or 1,3-bis(5-bromopentyl)-6-methyl-uracil with benzylamine afforded pyrimidinophanes containing the nitrogen atom in the polymethylene bridge. Single-crystal X-ray diffraction study and NMR and UV spectroscopic study in solution demonstrated that the phenyl and uracil fragments in the macrocycles are in spatial proximity. Unlike the known macrocycles containing the pyrimidine ring, the pyrimidinophanes under study are conformationally rigid.

The molecular and crystal structure and the hydrogen bonding in crystal and in solutions of N-phenyl-N-(3,5-di-tert-butyl-4-hydroxybenzyl)thiourea and N-(3,5-di-tert-butyl-4-hydroxybenzyl)thiourea were studied by single crystal X-ray diffraction and IR spectroscopy. The intermolecular interactions of these compounds are essentially different.

The IR and Raman spectra and conformations of the ionic liquid 1-ethyl-3-methyl-1H-imidazolium tetrafluoroborate, [EMIM][BF4] (6), were analyzed within the framework of scaled quantum mechanics (SQM). It was shown that SQM successfully reproduced the spectra of the ionic liquid. The computations revealed that normal modes of the EMIM+ (.) BF4- ion pair closely resemble those of the isolated ions EMIM+ and BF4-, except for the antisymmetric BF stretching vibrations of the anion, and the out-of-plane and stretching vibrations of the H-C(2) moiety of the cation. The most plausible explanation for the pronounced changes of the latter vibrations upon ion-pair formation is the H-bonding between H-C(2) and BF4-. However, these weak H-bonds are of minor importance compared with the Coulomb interactions between the ions that keep them closely associated even in dilute CD2Cl2 Solutions. According to the 'gas-phase' computations, in these associates, the BF4- anion is positioned over the imidazolium ring of the EMIM+ cation and has short contacts not only with the H-C(2) of the latter, but also with a proton of the Me-N(3) group.

The reactions of 3-benzoylquinoxalin-2-one and its N(1)-alkyl derivatives with 1,2-phenylenediamines were accompanied by ring contraction as a result of the quinoxaline-benzoimidazole rearrangement giving rise to 2-benzoimidazolyl-substituted quinoxalines. The possible pathways of these reaction are discussed.

A series of conformationally heterogeneous and energetically multilevel ω-diphenylphosphoryl- and ω-diphenylthiophosphoryl-substituted aliphatic alcohols, whose molecules are capable of five-, six-, and seven-membered ring closure due to the OH...O=P or OH...S=P intramolecular hydrogen bond (IHB), was studied by IR spectroscopy and molecular mechanics. The data obtained confirm the previous assumption that the energy of IHB (EIHB) differs substantially from the difference of enthalpies of conformers with and without IHB (–ΔH ), which is experimentally determined by the temperature dependence of the intensity of IR ν(OH) absorption bands. The measured –ΔH values can be positive, zero, or negative at significant IHB effects, i.e., at high Δν(OH) and EIHB values.

A new type of macrocycle containing 2-thio-4-aminopyrimidine and 6-methyluracil moieties has been studied by IR and UV spectroscopy. The vibrational spectra, conformations and amine–imine tautomerism of the aminopyrimidine fragments have been analysed within the framework of ab initio MO theory (HF/6-31G**, MP2/6-31G**) and density functional theory (B3LYP/6-31G**). According to experimental and theoretical results, the amino form is preferred in these compounds. Both intra- and intermolecular hydrogen bonds of the type NH⋯N are present in crystals, whereas in solutions, conformational equilibria with free NH groups are also obtained.

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