Diatoms play a fundamental ecological role as primary producers in aquatic food webs. Among these, a little number of solitary species of the genus Chaetoceros are of great interest as live food for aquaculture, including major taxa like Chaetoceros calcitrans which have been well studied in terms of growth and essential lipid content. In contrast, the globally distributed species Chaetoceros tenuissimus has not been investigated as a potential live prey for aquaculture. For a preliminary analysis of the effect of culture conditions on growth and biomass content of a new strain of C. tenuissimus (CT16ED, hereafter CTEN) isolated from a Mediterranean lagoon, we first considered the light regime, comparing cultivation under a light–dark (L:D) cycle (12:12 h L:D photoperiod) and under continuous light, which conditions were also applied to a C. calcitrans strain, CCAP1085/3 (CCAL). Both strains had a similar growth rate under continuous light, but growth rate was lower in CTEN than in CCAL under the L:D cycle. Photosynthetic pigments content was higher under the L:D cycle than under continuous light in both strains, and higher pigment content was found in CCAL than in CTEN, indicating different photoacclimation. The lipid content of CTEN did not change markedly with photoperiod or growth phase, unlike CCAL. Both strains had high proportions of essential lipids, particularly n-3 polyunsaturated fatty acids, including EPA and DHA, but these varied less in CTEN than in CCAL. CTEN was richer in DHA (22:6n-3) with a more balanced DHA:EPA ratio. From these results, a potential interest of CTEN for use in aquaculture is discussed, with regard to its nutritional quality (essential lipid content), its growth, and its high-light niche offering possibilities for cultivation in outdoor systems in the Mediterranean area.

Mediterranean coastal lagoons are particularly vulnerable to increasing direct anthropogenic threats and climate change. Understanding their potential responses to global and local changes is essential to develop management strategies adapted to these ecosystems. Salinity is a fundamental structuring factor for phytoplankton communities; however, its role under climate change is understudied. We hypothesized that salinity variations imposed by climate change and/or management actions could disturb Mediterranean lagoons’ phytoplankton communities. To test our hypothesis, we performed two 5-day microcosm experiments in which natural phytoplankton assemblages from the Santa Giulia lagoon (Corsica Island) were subjected to three increasing (53–63–73) and decreasing (33–26–20) levels of salinity, to mimic strong evaporation and flash flooding, respectively. Results indicate that over-salinization inhibited growth and modified the assemblages’ composition. Freshening, on the contrary, showed feeble effects, mainly boosting microphytoplankton abundance and depleting diversity at lowest salinity. In both experiments and under freshening in particular, initially rare species emerged, while photosynthetic activity was degraded by salinity increase only. We demonstrated that phytoplankton communities’ structure and metabolism are strongly altered by the predicted implications of climate change. Such impacts have to be considered for future management of coastal lagoons (control of sea exchanges and watershed fluxes). This work constitutes a priority step towards the proactive adapted management and conservation of such as-yet-neglected ecosystems in the context of climate change.

Human and livestock sewage is one of the major causes of excess nutrients, leading to the eutrophication of aquatic ecosystems and potentially to the emergence or spread of pathogenic viruses. This study aimed to investigate the composition and diversity of aquatic viromes in a highly anthropized lagoon, to identify the presence of pathogenic taxa and to explore their use as possible viral indicators of faecal contamination. For this, water and sediment samples were collected in the Ebrié Lagoon (Ivory Coast) at seven stations with contrasting levels of eutrophication. The DNA viromes of the planktonic and the benthic compartments were highly divergent, but were not influenced by the level of eutrophication. Conversely, the RNA viromes in the water column were comparable to those found in sediment, but showed significant differences between the stations. We detected the presence of viral DNA and RNA sequences we had assigned as indicators of faecal contamination (smacovirus, pecovirus and pepper mild mottle virus) as well as human pathogens (human cyclovirus, coxsackie B virus and picobirnavirus), which were all enriched in the most eutrophicated sites. These findings suggest that the examination of viromes represents a promising tool for assessing the state of human-induced contamination of aquatic ecosystems.

Plastic is now a pervasive pollutant in all marine ecosystems. The microplastics and macroplastic debris were studied in three French Mediterranean coastal lagoons (Prevost, Biguglia and Diana lagoons), displaying different environmental characteristics. In addition, biofilm samples were analyzed over the seasons to quantify and identify microalgae communities colonizing macroplastics, and determine potentially harmful microorganisms. Results indicate low but highly variable concentrations of microplastics, in relation to the period and location of sampling. Micro-Raman spectroscopy analyses revealed that the majority of macroplastic debris corresponded to polyethylene (PE) and low-density polyethylene (LDPE), and to a far lesser extent to polypropylene (PP). The observations by Scanning Electron Microscopy of microalgae communities colonizing macroplastic debris demonstrated differences depending on the seasons, with higher amounts in spring and summer, but without any variation between lagoons and polymers. Among the Diatomophyceae, the most dominant genera were Amphora spp., Cocconeis spp., and Navicula spp.. Cyanobacteria and Dinophyceae such as Prorocentrum cordatum, a potentially toxic species, were also found sporadically. The use of Primer specific DNA amplification tools enabled us to detect potentially harmful microorganisms colonizing plastics, such as Alexandrium minutum or Vibrio spp. An additional in situ experiment performed over one year revealed an increase in the diversity of colonizing microalgae in relation to the duration of immersion for the three tested polymers PE, LDPE and polyethylene terephthalates (PET). Vibrio settled durably after two weeks of immersion, whatever the polymer. This study confirms that Mediterranean coastal lagoons are vulnerable to the presence of macroplastic debris that may passively host and transport various species, including some potentially harmful algal and bacterial microorganisms.

. Outdoor recreational activities for leisure and for sport training have grown in popularity. Their environmental impacts remain little studied, especially the waste generated by over-frequentation. Our objective was to document how frequentation of a short mountain hiking trail can lead to significant quantities of waste. To this aim, all small objects found along a three-kilometer trail were collected and their origin determined. Polymers were predominant, and were mostly shoe sole fragments. This has never beendocumentedand must be publicized due to the potential harmfulness to terrestrial and riparian ecosystems, and to increase the walkers’ awareness.

Mediterranean coastal lagoons are affected by multiple threats (demographic pressures, eutrophication, climate change) expected to increase in the future and impact the ecosystem services provided. Conservation norms and scientific studies usually focus on large lagoons (> 0.5 km(2)) due to their economic importance, while they ignore smaller lagoons. These are poorly understood and often unprotected, despite their prevalence within the Mediterranean region and their importance. Qualitative and quantitative characterisation of small lagoons, in terms of functioning and sensitivity to global and local changes, are needed to develop appropriate management strategies. For this purpose, this work provides the first inventory of all Corsican lagoons and has investigated three of them of small size (Arasu, Santa Giulia, Balistra), characterised by contrasting anthropogenic contexts (highly modified/disturbed, medium disturbance, quasi-pristine). At the regional level, 91 of the 95 lagoons identified are < 0.5 km(2), making Corsica a good example for the study of small Mediterranean lagoons. The three case studies showed differences in their seasonal biogeochemical cycles and phytoplankton communities (biomass, diversity, photosynthetic efficiency). Arasu and Santa Giulia lagoons showed an increase in watershed urbanisation (+ 12% and + 6% in 30 years), high phytoplankton biomass, low diversity and blooms of potentially harmful dinoflagellates. Conversely, Balistra lagoon showed a good status overall, but some anthropogenic pollution sources within its watershed. This study demonstrates the importance of small lagoons at regional and Mediterranean scale, and provides knowledge on studied local sites but also potential applications elsewhere. The importance of an integrated approach considering lagoons within their adjacent connected systems (watershed and sea) and anthropogenic contexts is highlighted.

Coastal lagoons are subjected to ever-increasing direct or indirect anthropic pressures and are inexorably deteriorating with serious issues regarding their resilience. In this paper, we assessed the functioning and evolution of the highly disturbed Biguglia coastal lagoon (Mediterranean Sea, Corsica) through an ecosystem-based approach (EBA), using multiple biotic and abiotic proxies (hydro-climatic context and eutrophication), considering its connectivity to sea and watershed and biological compartments (macrophytes, phytoplankton, and invasive species) and taking into account human influence (management actions and fishing activities). The aim of this work is firstly to provide a comprehensive analysis of its long-term (2000–2021) ecological evolution trajectory and then, based on these results, to anticipate management strategies for supporting its conservation and restoration, and the maintenance of ecosystem services it offers. Results revealed that while the lagoon showed these days a good capacity to recover after disturbance and absorb change, it recently exhibited considerable changes in its phytoplankton community composition, developed an increased susceptibility to biological invasion, and experienced a drastic reduction in fish stocks. The major interannual variations of the mean salinity, strongly dependent on management interventions beyond natural climatic variability, summarized this instability. In the future, the lagoon may no longer be able to cope with even small disturbances, which could then be sufficient to reach a breakpoint and tip the system permanently into undesired/degraded states. We demonstrated that local and punctual management actions are not always beneficial for the entire ecosystem or even detrimental in some instances. Such a retrospective ecosystem-based approach is fundamental for producing the holistic insights required to implement efficient integrated ecosystem management. This further helps enhance lagoon resilience and hence preserve its ecosystem services in the context of increasing global changes. Such lessons are useful anywhere for comparable ecosystems.

Detailed seasonal analyses of phytoplankton assemblages’ composition were performed on long-term datasets (20 years) of two oligotrophic Mediterranean lagoons (Diana and Urbino), in order to test if phytoplankton community and bloom events patterns rely on a seasonal basis. Our results highlight a similar phytoplankton composition between the lagoons, but different patterns in terms of phytoplankton abundances, of timing, magnitude and occurrence of Taxonomic Units, and of bloom events occurrence. Dominant diatoms group showed a seasonal repartition, with highest contribution of Skeletonema sp. during winter and spring, some other groups emerging in warmer seasons (e.g. Chaetoceros spp.), or not showing marked seasonality (e.g. Pseudo-nitzschia spp.). Dinoflagellates’ abundances were higher during autumn, besides exhibiting punctual proliferations over the year. Salinity was the strongest environmental parameter in controlling Diana lagoon phytoplankton community, while Urbino community was mostly controlled by turbidity. A worrying evolution of the toxic diatom Pseudo-nitzschia spp., linked to salinity and temperature changes, was detected in both lagoons. We further demonstrated changes in the phytoplankton community are ongoing in these lagoons, despite their contrasting human pressure contexts, indicating that serious impacts on phytoplankton dynamics and blooms triggering in Mediterranean lagoons shall be foreseen within the current and forecasted climate change scenarios.

Ecological traits of aquatic microorganisms have been poorly investigated in tropical latitudes, especially in lagoons, which are often subjected to strong anthropogenic influence, conducive to microbial development. In this study, we examined the abundance of both viral and bacterial communities, as well as their interactions (lytic and lysogenic infections) in the water and sediment of seven main stations of the Ebrié Lagoon (Ivory Coast) with contrasting levels of eutrophication. The highest bacterial and viral concentrations in both planktonic and benthic samples were found in the most eutrophicated stations, where viral lytic infections also exhibited their highest values. Conversely, the highest fractions of inducible lysogens were measured in the most oligotrophic stations, suggesting that these two main viral life strategies are mutually exclusive in this lagoon. Our findings also revealed the importance that nutrients (especially ammonium) play as drivers of the interactions between viruses and their bacterial hosts in tropical lagoons.

Among the marine planktonic diatoms, Chaetoceros is among the most species-rich genera, and many Chaetoceros species are considered important primary producers. However, little is known about the ecology and distribution of the few small solitary species within this genus, including Chaetoceros tenuissimus. This article describes a minute Chaetoceros strain, identified as C. tenuissimus (named CT16ED) that was isolated at a coastal lagoon in Corsica Island, Western Mediterranean. The strain was characterized by light microscopy and scanning and transmission electron microscopy, with a specific focus on the fine structure and construction of setae and its behaviour in culture. The CT16ED strain was compared with other strains we isolated from the species type locality (Ostend Harbour, North Sea) by sequencing a fragment of the nuclear ribosomal DNA (rDNA) spanning from the 18S rDNA to the D3 region of the 28S rDNA, and the plastid rbcL gene that codes the large RuBisCO subunit. Based on the literature and the available sequence data, the analysed strains were similar to C. tenuissimus but the phylogenetic analysis indicated a C. tenuissimus species complex that contained several clades, therefore the current taxonomic status of C. tenuissimus is discussed. The comparison with the available rDNA and rbcL sequencing data of strains assigned to species considered as synonyms of C. tenuissimus, including Chaetoceros simplex var. calcitrans, Chaetoceros calcitrans and Chaetoceros calcitrans f. pumilus, suggested that these taxa are paraphyletic within the genus Chaetoceros.

Un Aquathon a été organisé les 20 et 21 novembre 2019 à Abidjan (Côte d’Ivoire) sur le thème des déchets plastiques dans l’océan. Trente participants de 18 structures publiques et privées ont expérimenté les outils et méthodes collaboratifs de l’innovation ouverte pour proposer des solutions. Il en ressort que les déchets plastiques doivent être éliminés et peuvent être transformés et valorisés pour assainir l’environnement et protéger la vie et la biodiversité. Quatre prototypes de solutions ont été collégialement identifiés : i) un processus de réduction des rejets plastiques dans l’environnement, ii) la valorisation des déchets plastiques à partir de moyens locaux, iii) la création d’emplois par le tri des déchets plastiques, et iv) un outil de suivi de la qualité biogéochimique des eaux. Ces solutions devront être approfondies avec les industriels, les consommateurs et les laboratoires d’innovation pour aboutir à leur mise en œuvre.

Les appellations de 152 pièces d’eau d’un bassin-versant du centre du Burkina Faso ont été répertoriées par l’autorité en charge de la mise en œuvre de la gestion intégrée des ressources en eau, dans l’objectif d’établir les bases d’une nomenclature du réseau hydrographique. 125 de ces pièces d’eau portent un nom en langue vernaculaire (en mòoré), dont le sens est indiqué en français dans le rapport technique qui synthétise les résultats de l’enquête. L’échantillon offre la possibilité de comparer le sens des noms attribués aux éléments naturels (les « cours d’eau ») et aux éléments artificiels (les « étendues d’eau » ou « petits barrages » comme on les dénomme localement). Les deux catégories ne partagent pas totalement les mêmes dénominations : les noms de l’eau varient, comme varient les perceptions et représentations qu’en ont leurs riverains. Des intuitions en lien avec l’appropriation plus ou moins revendiquée des réservoirs artificiels et les modalités de leurs mises en valeur peuvent être avancées.

Small reservoirs (SRs) are essential water storage infrastructures for rural populations of Sub-Saharan West Africa. In recent years, rapid population increase has resulted in unprecedented land use and land cover (LULC) changes. Our study documents the impacts of such changes on the water quality of SRs in Burkina Faso. Multi-temporal Landsat images were analyzed to determine LULC evolutions at various scales between 2002 and 2014. Population densities were calculated from downloaded 2014 population data. In situ water samples collected in 2004/5 and 2014 from selected SRs were analyzed for Suspended Particulate Matter (SPM) loads, an integrative proxy for water quality. The expansion of crop and artificial areas at the expense of natural covers controlled LULC changes over the period. We found a very significant correlation between SPM loads and population densities calculated at a watershed scale. A general increase between the two sampling dates in the inorganic component of SPM loads, concomitant with a clear expansion of cropland areas at a local scale, was evidenced. Results of the study suggest that two complementary but independent indicators (i.e., LULC changes within 5-km buffer areas around SRs and demographic changes at watershed scale), relevantly reflected the nature and intensity of overall pressures exerted by humans on their environment, and locally on aquatic ecosystems. Recommendations related to the re-greening of peripheral areas around SRs in order to protect water bodies are suggested.

A major forthcoming sanitary issue concerns the apparition and spreading of drug-resistant microorganisms, potentially threatening millions of humans. In low-income countries, polluted urban runoff and open sewage channels are major sources of microbes. These microbes join natural microbial communities in aquatic ecosystems already impacted by various chemicals, including antibiotics. These composite microbial communities must adapt to survive in such hostile conditions, sometimes promoting the selection of antibiotic-resistant microbial strains by gene transfer. The low probability of exchanges between planktonic microorganisms within the water column may be significantly improved if their contact was facilitated by particular meeting places. This could be specifically the case within biofilms that develop on the surface of the myriads of floating macroplastics increasingly polluting urban tropical surface waters. Moreover, as uncultivable bacterial strains could be involved, analyses of the microbial communities in their whole have to be performed. This means that new-omic technologies must be routinely implemented in low- and middle-income countries to detect the appearance of resistance genes in microbial ecosystems, especially when considering the new ‘plastic context.’ We summarize the related current knowledge in this short review paper to anticipate new strategies for monitoring and surveying microbial communities.

The European Water Framework Directive and several other legislations worldwide have selected phytoplankton for monitoring the ecological status of surface waters. This assessment is a complicated task in coastal lagoons due to their intrinsic variability, prompting moves to use real-time measurements. Here, we tested the ability of the submersible spectrofluorometer FluoroProbe® to accurately estimate the phytoplankton biomass and to efficiently discriminate spectral groups in Mediterranean coastal lagoons, by using sub-surface water samples (n = 107) collected at Biguglia lagoon (Corsica) in different environmental situations (salinity and trophic state) from March 2012 to December 2014. We compared the estimates of biomass and phytoplankton group composition obtained with the FluoroProbe® (in situ and lab measurements) with the spectrofluorimetrically measured biomass and HPLC-derived quantifications of pigment concentrations. FluoroProbe® provided good estimates of the total phytoplankton biomass (particularly, the lab measurements). The FluoroProbe® data were significantly correlated with the HPLC results, except for the in situ measurements of very weak concentrations of blue-green and red algae. Our findings indicate that factory-calibrated FluoroProbe® is an efficient and easy-to-use real-time phytoplankton monitoring tool in coastal lagoons, especially as an early warning system for the detection of potentially harmful algal blooms. Practical instructions dedicated to non-specialist field operators are provided. A simple and efficient method for discarding in situ measurement outliers is also proposed.

Africa is currently an important region in which cholera epidemics occur. Little is known about the presence of Vibrio cholerae in freshwater bodies in Africa. There are ca. 1700 lakes and reservoirs in Burkina Faso, most of which have been built within recent decades to secure water resources. The purpose of this study was to investigate the presence of V. cholerae in the water of reservoirs, using the most-probable-number polymerase chain reaction. Results showed that V. cholerae could be detected in water samples collected from 14 of 39 sampled reservoirs. The concentrations varied from 0 MPN/l to more than 1100 MPN/l. Fifty strains of V. cholerae isolated on CHROMagar (TM) vibrio were identified as V. cholerae non-O1/non-O139, none of which carried the ctxA gene. A significant positive correlation was found between the presence of V. cholerae in the reservoirs and both alkaline pH and phytoplankton biomass. V. cholerae was present in significantly higher numbers in reservoirs of urban areas than in rural areas. Since V. cholerae non-O1/non-O139 has been shown to be a causative agent of endemic diarrheal outbreaks, their presence in Burkina Faso reservoirs suggests they may play a role in gastroenteritis in that country. (C) 2017 Institut Pasteur. Published by Elsevier Masson SAS. All rights reserved.

Macrophytes are known to release allelochemicals that have the ability to inhibit the proliferation of their competitors. Here, we investigated the effects of the fresh leaves of two magnoliophytes (Zostera noltei and Cymodocea nodosa) and thalli of the macroalgae Ulva rigida on three HAB-forming benthic dinoflagellates (Ostreopsis cf. ovata, Prorocentrum lima, and Coolia monotis). The effects of C. nodosa and U. rigida were also tested against the neurotoxic planktonic dinoflagellate Alexandrium pacificum Litaker sp. nov (former Alexandrium catenella). Co-culture experiments were conducted under controlled laboratory conditions and potential allelopathic effects of the macrophytes on the growth, photosynthesis and toxin production of the targeted dinoflagellates were evaluated. Results showed that U. rigida had the strongest algicidal effect and that the planktonic A. pacificum was the most vulnerable species. Benthic dinoflagellates seemed more tolerant to potential allelochemicals produced by macrophytes. Depending on the dinoflagellate/macrophyte pairs and the weight of leaves/thalli tested, the studied physiological processes were moderately to heavily altered. Our results suggest that the allelopathic activity of the macrophytes could influence the development of HAB species.

The Biguglia lagoon is a shallow Mediterranean coastal ecosystem where eutrophication is increasing for years. A channel supplying freshwater was cleared in 2009 to enhance lagoon water circulation and alleviate dystrophic crises. Monthly monitoring was started in 2010 to document the impacts of this action on abiotic characteristics and phytoplankton communities. Three stations were surveyed (by microscopy and HPLC). Evidence suggests that this operation had an unexpected outcome. Salinity footprints indicated the succession of three main hydrological sequences that depended on rainfall and circulation pattern. Diatoms and dinoflagellates dominated the first sequence, characterized by heavy rainfall, while Prorocentrum minimum became progressively the dominant species in the second period (increasing salinities) with extensive bloom over the whole lagoon (5.93×10-5cells·L−1) during the third period. These phytoplankton successions and community structures underline the risk of pernicious effects arising from remediation efforts, in the present case based on increasing freshwater inputs.

Dinoflagellate proliferation is common in coastal waters, and trophic strategies are often advanced to explain the success of these organisms. The Biguglia lagoon is a Mediterranean brackish ecosystem where eutrophication has long been an issue, and where dominance of dinoflagellates has persisted for several years. Monthly monitoring of fluorescence-based properties of phytoplankton communities carried out in 2010 suggested that photosynthesis alone could not support the observed situation all year round. Contrasting food webs developed depending on the hydrological season, with a gradual shift from autotrophy to heterotrophy. Progressively, microphytoplankton assemblages became unequivocally dominated by a Prorocentrum minimum bloom, which exhibited very weak effective photosynthetic performance, whereas paradoxically its theoretical capacities remained fully operational. Different environmental hypotheses explaining this discrepancy were examined, but rejected. We conclude that P. minimum bloom persistence is sustained by mixotrophic strategies, with complex compromises between phototrophy and phagotrophy, as evidenced by fluorescence-based observations.