Mycelium-forming aerobic actinomycete, strain VKM Ас-2527T, was isolated from a soil sample collected from the North Caucasus mountains. The 16S rRNA gene sequence similarities of this strain to the type strains of the known Kribbella species ranged from 95.5 to 98.5

Four salt-tolerant and aromatics degrading strains used in this study were isolated from polluted technogenic soil on the territory of the Verkhnekamsk potash deposit (Russia). The strains were aerobic, Gram-stain-positive, non-motile, non-endospore-forming irregular rods, exhibiting a marked rod-coccus growth cycle. They contained lysine-based peptidoglycan, teichulosonic acid and poly(glycosyl phosphate) polymers in the cell walls. The major menaquinone was MK-9(H2), the predominant fatty acids were saturated, anteiso- and iso-branched, and the major compounds of polar lipid profiles included phosphatidylglycerol, diphosphatidylglycerol, phosphatidylinositol and two glycolipids (monogalactosyldiacylglycerol and dimannosylglyceride). The strains showed the highest 16S rRNA gene sequence similarity to Arthrobacter crystallopoietes (99.6–99.9

Puromycin (Puro) is a natural aminonucleoside antibiotic that inhibits protein synthesis by its incorporation into elongating peptide chains. The unique mechanism of Puro finds diverse applications in molecular biology, including the selection of genetically engineered cell lines, in situ protein synthesis monitoring, and studying ribosome functions. However, the key step of Puro biosynthesis remains enigmatic. In this work, pur6-guided genome mining is carried out to explore the natural diversity of Puro-like antibiotics. The diversity of biosynthetic gene cluster (BGC) architectures suggests the existence of distinct structural analogs of puromycin encoded by pur-like clusters. Moreover, the presence of tRNACys in some BGCs, i.e., cst-like clusters, leads us to the hypothesis that Pur6 utilizes aminoacylated tRNA as an activated peptidyl precursor, resulting in cysteine-based analogs. Detailed metabolomic analysis of Streptomyces sp. VKM Ac-502 containing cst-like BGC revealed the production of a cysteinyl-based analog of Puro—cystocin (Cst). Similar to puromycin, cystocin inhibits both prokaryotic and eukaryotic translation by the same mechanism. Aminonucleoside N-acetyltransferase CstC inactivated Cst, mediating antibiotic resistance in genetically modified bacteria and human cells. The substrate specificity of CstC originated from the steric hindrance of its active site. We believe that novel aminonucleosides and their inactivating enzymes can be developed through the directed evolution of the discovered biosynthetic machinery.

An aerobic, rod-shaped, non-motile, endospore-forming bacterium, strain V-9T, was found in the frozen volcanic ash, Kamchatka peninsula, Russia. Phylogenies based on 16S rRNA gene and genome sequences demonstrated that strain V-9T was affiliated with the family Paenibacillaceae and clustered outside the clade that includes the type species of this genus, Paenibacillus polymyxa, and closely related species. V-9T showed the highest 16S rRNA gene sequences similarity to Paenibacillus chartarius CCUG 55240T (96.7

Seven actinomycete strains assigned to seven new species of the genus Kribbella were isolated from soils of different regions in Russia. The strains exhibited 98.2–99.3

A gram-stain-negative, aerobic, rod-shaped and motile bacterium, designated Alg18-2.2T, was isolated from a bottom sediment of the highly alkaline-saline lake in Buryatia, Russia. The isolate is facultatively alkaliphilic, growing at pH 7.0–12.0 (optimum at 9.0–9.5), and salt-tolerant up to 7

Antimicrobial resistance is a global public health threat. One of the possible ways to solve this problem is phage therapy, but the instability of bacteriophages hinders the development of this approach. A bacteriophage delivery system that stabilizes the phage is one of the possible solutions to this problem. This study is dedicated to exploring methods to create encapsulated forms of bacteriophages for delivery. We studied the effect of proteolytic enzymes on the destruction of the polyelectrolyte microcapsule shell and revealed that protease from Streptomyces griseus was able to destroy the membrane of the microcapsule (dextran sulfate/polyarginine)3 ((DS/PArg)3). In addition, the protease decreased the activity of the bacteriophage in the second hour of incubation, and the phage lost activity after 16 h. It was found that a medium with pH 9.02 did not affect the survival of the bacteriophage or E. coli. The bacteriophages were encapsulated into polyelectrolyte microcapsules (DS/PArg)3. It was established that it is impossible to use microcapsules as a means of delivering bacteriophages since the bacteriophages are inactivated. When bacteriophages were included inside a CaCO3 core, it was demonstrated that the phage retained activity before and after the dissolution of the CaCO3 particle. From the results of this study, we recommend using CaCO3 microparticles as a container for bacteriophage delivery through the acidic stomach barrier.

The structure of the cell wall glycopolymer and the taxonomic position of the pyridine-degrading strain VKM Ac-1098D were established. By using chemical and NMR spectroscopic methods, the glycopopolymer was identified as 1,6-linked β-D-galactofuranan with side diaminoglucose residue (2,3-diacetamido-2,3-dideoxy-β-glucopyranose, β-GlcpNAc3NAc). This polymer structure has not been previously described in prokaryotes. Structurally similar galactofuranan which differed from the polymer of strain VKM Ac-1098D by the α-configuration of diaminoglucose (α-GlcpNAc3NAc) in the side chain was found previously in some studied Paenarthrobacter species. The results of the 16S rRNA gene sequence analysis and MALDI-TOF clustering showed that strain VKM Ac-1098D represents a new species of the genus Paenarthrobacter tentatively named “Paenarthrobacter pyridinovorans”. The data obtained in this and earlier works indicate that galactofuranan with diaminoglucose in the side chain may serve as a chemotaxonomic marker of the genus Paenarthrobacter and the α-configuration of the glycosidic bond of diaminoglucose may be a feature characteristic of the putative new species.

During a cultural diversity survey on hydrolytic bacteria in saline alkaline soils, a hydrolytic actinobacterium strain ACPA39T was enriched and isolated in pure culture from a soda solonchak soil in southwestern Siberia. It forms a substrate mycelium with rod-shaped sporangia containing 1-3 exospores. The isolate is obligately alkaliphilic, growing at pH 7.5-10.3 (optimum at 8.5-9.0) and moderately halophilic, tolerating up to 3 M total Na+ in the form of sodium carbonates. It is an obligately aerobic, organoheteroterophic, saccharolytic bacterium, utilizing various sugars and alpha/beta-glucans as growth substrates. According to the 16S rRNA gene-based phylogenetic analysis, strain ACPA39T forms a distinct branch within the family Micromonosporaceae, with the sequence identities below 94.5% with type strains of other genera. This is confirmed by phylogenomic analysis based on the 120 conserved single copy protein-based markers and genomic indexes (ANI, AAI). The cell-wall of ACPA39T contained meso-DAP, glycine, glutamic acid and alanine in a equimolar ratio, characteristic of the peptidoglycan type A1c'. The whole-cell sugars include galactose and xylose. The major menaquinone is MK-10(H4). The identified polar lipids consist of phosphatidylglycerol, diphosphatidylglycerol, phosphatidylethanolamine and phosphatidylinositol. The polar lipid fatty acids were dominated by anteiso-C17:0, iso-C16:0, iso-C17:0, 10 Me-C18: 0 and C18:1x9. Based on the distinct phylogeny, the chemotaxonomy features and unique phenotypic properties, strain ACPA39T (DSM 106523T = VKM 2772T) is classified into a new genus and species in the family Micromonosporaceae for which the name Natronosporangium hydrolitycum gen. nov., sp. nov. is proposed. (C) 2022 The Author(s). Published by Elsevier GmbH.

The composition and structure of the cell wall glycopolymers from Arthrobacter crystallopoietes VKM Ac-1107 T (family Micrococcaceae , phylum Actinobacteria ), previously assigned to the “A. globiformis ” group based on the high similarity of 16S rRNA gene sequences and traditional chemotaxonomic markers were studied. Teichoic acid—1,3-poly(glycerol phosphate) substituted with β-glucose residues, and diglycosyl 1-phosphate polymer with -6)-α-D-Gal p NAc-(1→6)-α-D-Glc p NAc-(1- P -repeating unit were identified by chemical and NMR spectroscopy methods. The results of phylogenomic (taxogenomic) analysis, viz. determination of the average amino acid identity (AAI) and the similarity of conserved proteins (POCP), indicate that A. crystallopoietes belongs to a new genus and the composition of the cell wall glycopolymers may serve as a diagnostic characteristic of this genus, which will be described on the basis of A. crystallopoietes.

The composition and structure of the cell wall glycopolymers of Paenarthrobacter species (P. aurescens VKM Ac-1105T, P. histidinovorans VKM Ac-1978T, and P. nicotinovorans VKM Ac-1988T, previously assigned to the genus Arthrobacter) were studied. All strains under study were found to contain a neutral polysaccharide, (1 → 6)-linked β-D-galactofuranan with the 2,3-diacetamido-2,3-dideoxy-α-glucopyranose (α-GlcpNAc3NAc) residues that glycosylate most of the hydroxyl groups at C-2 of galactofuranose. Acid hydrolysates of the cell walls contained galactose, glucose, arabinose, glucosamine, and galactosamine. The polysaccharide structure was established by chemical and NMR spectroscopic methods. The galactofuranan structure has not been previously described for representatives of other Actinobacteria genera. The data obtained expand our understanding of the chemical structure of microbial cell walls and may be used in taxonomy of actinobacteria, especially to differentiate at the phenotype level and to justify the description of new genera in the family Micrococcaceae.

An intracellular bacterium, strain IAS T , was observed to infect several species of the plant-parasitic nematode genus Xiphinema ( Xiphinema astaregiense , Xiphinema incertum , Xiphinema madeirense , Xiphinema pachtaicum , Xiphinema parapachydermum and Xiphinema vallense ). The bacterium could not be recovered on axenic medium. The 16S rRNA gene sequence of IAS T was found to be new, being related to the family Burkholderiaceae, class Betaproteobacteria. Fungal endosymbionts Mycoavidus cysteinexigens B1-EB T (92.9 % sequence identity) and ‘ Candidatus Glomeribacter gigasporarum’ BEG34 (89.8 % identity) are the closest taxa and form a separate phylogenetic clade inside Burkholderiaceae. Other genes ( atpD , lepA and recA ) also separated this species from its closest relatives using a multilocus sequence analysis approach. These genes were obtained using a partial genome of this bacterium. The localization of the bacterium (via light and fluorescence in situ hybridization microscopy) is in the X. pachtaicum females clustered around the developing oocytes, primarily found embedded inside the epithelial wall cells of the ovaries, from where they are dispersed in the intestine. Transmission electron microscopy (TEM) observations supported the presence of bacteria inside the nematode body, where they occupy ovaries and occur inside the intestinal epithelium. Ultrastructural analysis of the bacterium showed cells that appear as mostly irregular, slightly curved rods with rounded ends, 0.8–1.2 µm wide and 2.5–6.0 µm long, possessing a typical Gram-negative cell wall. The peptidoglycan layer is, however, evident only occasionally and not detectable by TEM in most cells. Another irregularly occurring shell surrounding the endosymbiont cells or the cell clusters was also revealed, probably originating from the host cell membrane. Flagella or spore-like cells do not occur and the nucleoid is diffusely distributed throughout the cell. This endosymbiont is transmitted vertically through nematode generations. These results support the proposal of IAS T as a new species, although its obligate intracellular and obligate endosymbiont nature prevented isolation of a definitive type strain. Strain IAS T is therefore proposed as representing ‘ Candidatus Xiphinematincola pachtaicus’ gen. nov., sp. nov.

Phage therapy is a great alternative to antibiotic drugs, but it can’t effectively overcome the over-acidic medium of the stomach. We offer the use of polyelectrolyte microcapsules as a protective means of bacteriophage. It is necessary to understand the influence of polyelectrolytes on bacteriophage survival. The work studied the effect of polyanions and polycations on the coliprotetic bacteriophage’s viability. We have shown that polyallylamine decreased bacteriophage’s viability during increasing polyelectrolyte concentration and polyarginine had a lower inhibitory effect (then PAH) on the activity of the bacteriophage due to polyelectrolyte concentration from 0.05 to 5 mg/mL. It was shown that the inhibition of the bacteriophage by polyallylamine had an electrostatic nature and the use of high ionic strength prevented the formation of the PAH-protein capsid complex. Polystyrene sulfonate does not affect bacteriophage viability during increasing polyelectrolyte concentration from 0.05 mg/mL to 1 mg/mL. Polystyrene sulfonate decreases the viability of bacteriophage from 5 mg/mL of polyelectrolyte concentration. Dextran sulfate inhibits bacteriophage activity at 20–30%. Dextran inhibits bacteriophage activity by 80% at diapason concentration from 0.05 to 5 mg/mL and loses the inhibition effect from a concentration of 5 mg/mL.

Here, we report a draft genome sequence of the strain Coralloluteibacterium stylophorae LMG 29479T, acquired from the Belgian Coordinated Collections of Microorganisms. The genus Coralloluteibacterium currently includes only one species with a validly published name. These genome sequencing data are important for the phylogeny of the Lysobacteraceae family.

A haloalkaliphilic hydrolytic actinobacterium, strain ACPA22T, was enriched and isolated in pure culture from saline alkaline soil (soda solonchak) in northeastern Mongolia. The isolate was facultatively alkaliphilic, growing at pH 6.5–10.5 (optimum at 7.3–9.0) and highly salt-tolerant, tolerating up to 3 M total Na+ as carbonates. The hydrolytic nature of ACPA22T was confirmed by two different growth-dependent methods and by the presence of multiple glycosidase-encoding genes in the genome. The 16S rRNA gene-based phylogenetic analysis demonstrated that strain ACPA22T formed a deep-branching lineage within the family Glycomycetaceae, with the highest sequence similarity value to Glycomyces buryatensis 18T (92.1 %) and Salininema proteolyticum Miq-4T (91.8 %). The average amino acid identity values (56.1–61.5 %) between ACPA22T and other Glycomycetaceae members with available genomes did not exceed the threshold reported for different genera. The cell wall of ACPA22T contained meso-diaminopimelic acid, glycine, glutamic acid and alanine in a molar ratio, characteristic of the peptidoglycan type A1γ'. The whole-cell sugars included mannose, galactose, arabinose, ribose and xylose. The major menaquinones were MK-10(Н4) and MK-11(Н4). The identified polar lipids were represented by phosphatidylethanolamine, diphosphatidylglycerol, phosphatidylglycerol, phosphatidylinositol and phosphatidylinositol mannosides. In addition, the strain had a few unidentified characteristic polar lipids, including an amine-containing phospholipid with chromatographic mobility similar to that of phosphatidylinositol. The polar lipid fatty acids were dominated by anteiso-C17 : 0 and iso-C16 : 0. The genome included a chromosome of 3.94 Mbp (G+C content 61.5 mol%) encoding 3285 proteins and two plasmids of 59.8 and 14.8 kBp. Based on the data obtained in this study, a new genus and species, Natronoglycomyces albus gen. nov., sp. nov, is proposed with the type strain ACPA22T (=DSM 106290T=VKM Ac-2771T).

AbstractSa.li.ni'co.la. L. fem. pl. n.salinaesalterns, salt works; N.L. suff. ‐cola(from L. masc. or fem. n.incola), inhabitant; N.L. masc. n.Salinicola,inhabitant of salterns.Proteobacteria / Gammaproteobacteria / Oceanospirillales / Halomonadaceae / SalinicolaThe genusSalinicola, classified within the familyHalomonadaceae, orderOceanospirillales, and in the classGammaproteobacteria, currently includes 12 species with validly published names. Cells are Gram‐stain‐negative, nonsporulating rods, motile by means of a single lateral/subpolar/polar flagellum or by peritrichous flagella. Aerobes or facultative anaerobes, chemoorganotrophs. Moderately halophilic, grow in the salinity range of 0–30% (w/v) NaCl, with the optimum of 0.5–20%, at near‐neutral pH. Mesophilic, optimal growth at 25–37°C, growth range 4–45°C. The predominant respiratory lipoquinone is ubiquinone with nine isoprene units (Q‐9). Major fatty acids mostly include C18:1ω7c, C16:0, and cyclo‐C19:0ω8c. Major polar lipids are phosphatidylglycerol, diphosphatidylglycerol, and phosphatidylethanolamine. Members of the genus are widely distributed in saline aquatic and terrestrial habitats such as seawater, deep sea sediments, saline soil, salt mines, and solar saltern and can be associated with halophyte plants and sea animals.Salinicolaspecies or strains have never been isolated from unequivocally pathological material from humans, animals, or plants.DNA G + C content (mol%): 60.6–65.8 (genome); 58.8–67.7 (HPLC).Size of sequenced genomes (bp): 3,620,402–4,628,485.Type species:Salinicola sociusAnan'ina et al. 2007, VL124.

A draft genome sequence of the bacterial isolate Alg18-2.2, recovered from the highly saline and alkaline lake Gudzhirganskoe (Buryatia, Russia), was determined. The results of bacterial identification using 16S rRNA gene sequence and whole-genome analyses suggest that the bacterium belongs to a novel genus. Some genomic features are discussed here.

A facultative anaerobic, rod-shaped, endospore-forming and non-motile bacterium was isolated from permafrost sediment cores in the Kolyma lowland, Siberia, Russia. The permafrost isolate clustered with members of the genus Cohnella on the basis of 16S rRNA gene sequence analysis and showed the highest sequence similarity to Cohnella saccharovorans CJ22T (96.3 %), followed by Cohnella cellulosilytica FCN3-3T (96.0 %) and Cohnella panacarvi KCTC 13060T (96.0 %). The chemotaxonomic characteristics (quinone system, cellular fatty acids and polar lipid profile) of strain 20.16T were consistent with members of the genus Cohnella. The peptidoglycan diaminoacids included meso-diaminopimelic acid and a small amount of ll-diaminopimelic acid. The molar ratio and composition of major amino acids (meso-diaminopimelic acid, alanine, and glutamic acid) correspond to the peptydoglycan type A1γ. The estimated genome size of strain 20.16T is 4.34 Mb (lower than those in other Cohnella species). The genome has a G+C content of 50.5 mol% and encodes 4843 predicted genes, of these 4740 are protein-coding ones. The results of chemotaxonomic, physiological and biochemical characterization allowed clear differentiation of strain 20.16T from the closest Cohnella species. Based on data provided, a new species Cohnella kolymensis sp. nov. is proposed, with 20.16T (=VKM B-2846T=DSM 104983T) as the type strain.

A draft genome sequence of a novel actinobacterium, Modestobacter sp. strain VKM Ac-2676, was derived using Ion Torrent sequencing technology. The genome size is 3.88 Mb with average G+C content of 73.40%. The genes encoding properties relevant to adaptability of this bacterium to a sharply continental climate zone were revealed.