Denoising low-field MR images is often essential to obtain image quality that is adequate for clinical diagnosis while keeping scan time patient-friendly. The recently introduced zero-shot self-supervised approach shows great promise, requiring no prior data collection for training, which is particularly challenging at low-field. Here, this scan-specific denoising approach is adapted to low-field MR data and optimized to accelerate the training process. We extended the zero-shot noise-as-clean method by modifying the training process to achieve faster training times. The proposed method was compared to BM4D and the recent zero-shot noise2noise methods. Denoising performance was first evaluated quantitatively on high-field data where high SNR images are available, then assessed qualitatively on prospective low-field data (0.1 T). Ultimately, we studied the denoising performance with respect to training on portions of the original data matrix as a potential strategy for further training acceleration. The proposed method achieved high denoising performance across different SNR levels within a few seconds on a GPU for typical low-field data dimensions. Additionally, training on portion of the data showed potential for further training acceleration. In the context of low-field MRI, this denoising method shows great potential, as it could be integrated into acquisition workflows relatively seamlessly to improve image quality. Code: https://github.com/reinaayde7/zs-nac.git.
Low magnetic field magnetic resonance imaging (MRI) ( B 0 $$ {B}_0 $$ < 1 T) is regaining interest in the magnetic resonance (MR) community as a complementary, more flexible, and cost-effective approach to MRI diagnosis. Yet, the impaired signal-to-noise ratio (SNR) per square root of time, or SNR efficiency, leading in turn to prolonged acquisition times, still challenges its relevance at the clinical level. To address this, researchers investigate various hardware and software solutions to improve SNR efficiency at low field, including the leveraging of latest advances in computing hardware. However, there may not be a single recipe for improving SNR at low field, and it is key to embrace the challenges and limitations of each proposed solution. In other words, suitable solutions depend on the final objective or application envisioned for a low-field scanner and, more importantly, on the characteristics of a specific low B 0 $$ {B}_0 $$ field. In this review, we aim to provide an overview on software solutions to improve SNR efficiency at low field. First, we cover techniques for efficient k -space sampling and reconstruction. Then, we present post-acquisition techniques that enhance MR images such as denoising and super-resolution. In addition, we summarize recently introduced electromagnetic interference cancellation approaches showing great promises when operating in shielding-free environments. Finally, we discuss the advantages and limitations of these approaches that could provide directions for future applications.
Biplanar magnets offer extended flexibility in MRI, particularly appealing due to unmatched accessibility to the patient. At low field strength (<0.2 T), such geometries could be particularly suitable for interventional settings or purpose-built applications such as musculoskeletal imaging. In the proposed work, we present a dual-channel, biplanar coil array for low-field MRI featuring almost fully open access when sited in a biplanar magnet. The proposed detector relies on the assembly of two orthogonal biplanar coils (single transmit channel, two receive channels in quadrature) respectively interfaced with custom inductive couplers. Simulations of the B 1 field in each element were performed before the quadrature coil was built and used at ∼ 0.1 T (4.33 MHz). Once assembled, the best performance in our setup was achieved in undermatched conditions in place of conventional 50- Ω matching. Phantom images display the extended coverage of the quadrature coil, with similar SNR from each individual biplanar coil. The combined images show an expected SNR gain of 2 that confirms good decoupling between the two channels (−36 dB). To the best of our knowledge, the proposed coil represents the first implementation of a biplanar geometry at low field and the first quadrature detection for a biplanar design. The open design and overall good sensitivity of our biplanar design enabled fast and quasi-isotropic 3D imaging with (1.6 × 1.6 × 2.2) mm 3 resolution in vivo in human extremities.
Low-field (LF) MRI research currently gains momentum from its potential to offer reduced costs and reduced footprints translating into wider accessibility. However, the impeded signal-to-noise ratio inherent to lower magnetic fields can have a significant impact on acquisition times that challenges LF clinical relevance. Undersampling is an effective way to speed up acquisitions in MRI, and recent work has shown encouraging results when combined with deep learning (DL). Yet, training DL models generally requires large databases that are not yet available at LF regimes. Here, we demonstrate the capability of Residual U-net combined with data augmentation to reconstruct magnitude and phase information of undersampled LF MRI scans at 0.1 T with a limited training dataset (n = 10). The model performance was first evaluated in a retrospective study for different acceleration rates and sampling patterns. Ultimately, the DL approach was validated on prospectively acquired, fivefold undersampled LF data. With varying performances associated to the adopted sampling scheme, our results show that the approach investigated can preserve the global structure and the details sharpness in the reconstructed magnitude and phase images. Overall, promising results could be obtained on acquired LF MR images that may bring this research closer to clinical implementation.
Proton resonance frequency shift (PRFS) is currently the gold standard method for magnetic resonance thermometry. However, the linearity between the temperature‐dependent phase accumulation and the static magnetic field B0 confines its use to rather high‐field scanners. Applications such as thermal therapies could naturally benefit from lower field MRI settings through leveraging increased accessibility, a lower physical and economical footprint, and further consideration of the technical challenges associated with the integration of heating systems into conventional clinical scanners. ‐based thermometry has been proposed as an alternative to the gold standard; however, because of longer acquisition times, it has found clinical use solely with adipose tissue where PRFS fails. At low field, the enhanced dispersion, combined with reduced relaxation times, make mapping an appealing candidate. Here, an interleaved Look‐Locker–based mapping sequence was proposed for temperature quantification at 0.1 T. A variable averaging scheme was introduced, to maximize the signal‐to‐noise ratio throughout recovery. In calibrated samples, an average accuracy of 85% ± 4% was achieved in 10 min, compared with the 77% ± 7% obtained using a standard averaging scheme. Temperature maps between 29.0 and 41.7°C were eventually reconstructed, with a precision of 3.0 ± 1.1°C and an accuracy of 1.5 ± 1.0°C. Accounting for longer thermal treatments and less strict temperature constraints, applications such as MR‐guided mild hyperthermia treatments at low field could be envisioned.
Most commonly used at clinical magnetic fields (1.5 to 3 T), magnetic resonance elastography (MRE) captures mechanical wave propagation to reconstruct the mechanical properties of soft tissue with MRI. However, in terms of noninvasively assessing disease progression in a broad range of organs (e.g., liver, breast, skeletal muscle, and brain), its accessibility is limited and its robustness is challenged when magnetic susceptibility differences are encountered. Low-field MRE offers an opportunity to overcome these issues, and yet it has never been demonstrated in vivo in humans with magnetic fields <1.5 T mainly because of the long acquisition times required to achieve a sufficient signal-to-noise ratio. Here, we describe a method to accelerate 3D motion-sensitized MR scans at 0.1 T using only 10% k -space sampling combined with a high-performance detector and an efficient encoding acquisition strategy. Its application is demonstrated in vivo in the human forearm for a single motion-encoding direction in less than 1 min.
OBJECTIVE:The aim of the proposed work is to develop model-based, fast multiparametric magnetic resonance imaging (MRI) in field regimes where signal-to-noise ratio is poor, such as encountered at low-field and in low γ nuclei.MATERIALS AND METHODS:A custom, optimized MRI pipeline was developed at low field (0.1 T) that relies on the magnetic resonance fingerprinting framework, called OPTIMUM. An optimization algorithm was used to select a short acquisition schedule (n = 18 images) that favors maximal discrimination across varying magnetic properties (T1, T2) and off-resonance effects while maintaining high transverse magnetization at the steady state. In the presented study, a stationary balanced steady-state approach was investigated that allows for Cartesian (used here) and non-Cartesian acquisition schemes. Images were collected in calibrated samples containing different concentrations of manganese(II) chloride (MnCl2) in deionized water and compared with gold standard techniques (ie, inversion recovery for T1, Carr-Purcell-Meiboom-Gill for T2). Images were then collected in vivo in the human hand and wrist.RESULTS:OPTIMUM successfully provided sets of quantified maps (T1, T2, T2*, M0, ΔB0, B1+) in calibrated samples and in vivo in the human hand and wrist in 3 dimensions, in ~8.5 minutes, with a voxel resolution of [1.5 ×1.5 × 6.5] mm3. Relaxation parameters (T1, T2) scale linearly with [MnCl2] and are in good agreement with the calibrations performed for T1, with a consistent trend to underestimate T2.CONCLUSION:We show that low-field MRI can benefit from innovative multiparametric approaches to gain speed and become realistic in clinical environments. For the first time, we report simultaneous, multiparametric imaging (6 quantitative maps) in 3 dimensions, in vivo in the human hand and wrist, obtained in just 8.5 minutes. It is sometimes overlooked that low magnetic fields provide higher dispersion of nuclear spin relaxation rates. Rapid quantification such as offered by OPTIMUM could be an enabling technology to explore new metrics and contrasts in point-of-care MRI diagnosis, making it an important step toward broad democratization.
EDITORIAL article Front. Phys., 09 September 2022Sec. Medical Physics and Imaging https://doi.org/10.3389/fphy.2022.1015289
MR Elastography is a novel technique enabling the quantification of mechanical properties in tissue with MRI. It relies on a three-step process that includes the generation of a mechanical vibration, motion capture using dedicated MR sequences, and data processing involving inversion algorithms. If not properly tuned to the targeted application, each of those steps may impact the final outcome, potentially causing diagnostic errors and thus eventually treatment mismanagement. Different approaches exist that account for acquisition or reconstruction errors, but simple tools and metrics for quality control shared by both developers and end-users are still missing. In this context, our goal is to provide an easily deployable workflow that uses generic validity criteria to assess the performance of a given MRE protocol, leveraging numerical simulations with an accessible experimental setup. Numerical simulations are used to help both determining sets of relevant acquisition parameters and assessing the data processing's robustness. Simple validity criteria were defined, and the overall pipeline was tested in a custom-built, structured phantom made of silicone-based material. The latter have the advantage of being inexpensive, easy to handle, facilitate the fabrication of complex structures which geometry resembles the anatomical structures of interest, and are longitudinally stable. In this work, we successfully tested and evaluated the overall performances of our entire MR Elastography pipeline using easy-to-implement and accessible tools that could ultimately translate in MRE standardized and cost-effective procedures.
This paper presents a tracking system using magnetometers, possibly integrable in a deep brain stimulation (DBS) electrode. DBS is a treatment for movement disorders where the position of the implant is of prime importance. Positioning challenges during the surgery could be addressed thanks to a magnetic tracking. The system proposed in this paper, complementary to existing procedures, has been designed to bridge preoperative clinical imaging with DBS surgery, allowing the surgeon to increase his/her control on the implantation trajectory. Here the magnetic source required for tracking consists of three coils, and is experimentally mapped. This mapping has been performed with an in-house three-dimensional magnetic camera. The system demonstrates how magnetometers integrated directly at the tip of a DBS electrode, might improve treatment by monitoring the position during and after the surgery. The three-dimensional operation without line of sight has been demonstrated using a reference obtained with magnetic resonance imaging (MRI) of a simplified brain model. We observed experimentally a mean absolute error of 1.35 mm and an Euclidean error of 3.07 mm. Several areas of improvement to target errors below 1 mm are also discussed.
Background and context: Low back pain is a dramatic burden worldwide. Discography studies have shown that 39% of chronic low back pain patients suffer from discogenic pain due to a radial fissure of intervertebral disc. This can have major implications in clinical therapeutic choices. The use of discography is restricted because of its invasiveness and interest in it remains low as it represents a static condition of the disc morphology. Magnetic Resonance Imaging (MRI) appears to be less invasive but does not describe the biomechanical dynamic behavior of the fissure. Purpose: We aimed to seek a quantitative MRI protocol combined with ex vivo sagittal loading to analyze the morphological and biomechanical changes of the intervertebral disc structure and stress distribution. Study design: Proof of concept. Methods: We designed a proof-of-concept ovine study including 3 different 3.0 T-MRI sequences (T 2 -weighted, T 1 and T 2 mapping). We analyzed 3 different mechanical states (neutral, flexion and extension) on a fresh ovine spine specimen to characterize an intervertebral disc before and after puncturing the anterior part of the annulus fibrosus. We used a mark tracking method to calculate the bending angles and the axial displacements of the discal structures. In parallel, we created a finite element model to calculate the variation of the axial stress and the maximal intensity shear stress, extrapolated from our experimental boundary conditions. Results: Thanks to an original combination of specific nuclear relaxation time quantifications (T 1 , T 2 ) of the discal tissue, we characterized the nucleus movement/deformation into the fissure according to the synchronous mechanical load. This revealed a link between disc abnormality and spine segment range of motion capability. Our finite element model highlighted significant variations within the stress distribution between intact and damaged disc. Conclusion: Quantitative MRI appears to provide a new opportunity to characterize intra-discal structural morphology, lesions and stress changes under the influence of mechanical load. This preliminary work could have substantial implications for non-invasive disc exploration and could help to validate novel therapies for disc treatment.
Physiotherapy is a health care discipline based on movement assessment and treatment. Mechanical Diagnosis and Therapy (MDT) is a reliable and efficient approach using repeated end-range movements ...
For about 30 years, MRI set cruising speed at 1.5 T of magnetic field, with a gentle transition toward 3 T systems. In its first 10 years of existence, there was an open debate on the question of most relevant MRI field strengths considering the gain inT(1)contrast, simpler cooling strategies, lower predisposition to generating image artifacts, and naturally cost reduction of small footprint low field systems. At the time, the inherent gain in sensitivity of high field, which would translate in more signal per unit time, quickly ended this debate. The promise of rapid exams or higher image resolution within a reasonable time won over other considerations and set the standards for MR value. Yet, many reasons bring low field MRI in a situation quite different from 40 years ago. From the achieved progress regarding all aspects of MRI technology, an MR scan at 1.5 T in the mid 1980s has very little in common with the equivalent scan in 2020. That clearly indicates that field strength alone is not what drives performance. It is also unlikely that the total number of machines worldwide will grow so to follow the increasing demand considering their overall cost (similar to$1M/T). The natural trend is to better control medical expenses worldwide, and reconsidering low-field MRI could lead to the democratization of dedicated, point-of-care devices to decongest high-field clinical scanners. In the present article, we aim to draw an extensive portrait of most recent MRI developments at low (1-199 mT) and ultra-low field (micro-Tesla range) outside of the commercial sphere, and we propose to discuss their potential relevance in future clinical applications. We will cover a broad spectrum from pre-polarized MRI using ultra-sensitive magnetic sensors up to permanent and resistive magnets in compact designs.
To cite this article: M. Yushchenko, M. Sarracanie, M. Amann, R. Sinkus, J. Wuerfel & N. Salameh (2019) Remote palpation of the human brain with magnetic resonance imaging: protocol optimization for the study of glioblastoma, Computer Methods in Biomechanics and Biomedical Engineering, 22:sup1, S348-S349, DOI: 10.1080/10255842.2020.1714939 To link to this article: https://doi.org/10.1080/10255842.2020.1714939
Fluorescent nanodiamonds have proven useful as nontoxic probes for optical tracking of subcellular processes. Here, we demonstrate that a resonant magnetic field can be used to transfer spin polarization from intrinsic defects at nanodiamond surfaces into surrounding solution, enabling imaging of nanodiamond via MRI. In combination with fluorescence techniques, this new MRI modality promises to enable nanodiamond as a bioprobe for noninvasive imaging over subcellular to whole body lengthscales.
Overhauser‐enhanced MRI (OMRI) is an electron‐proton double‐resonance imaging technique of interest for its ability to non‐invasively measure the concentration and distribution of free radicals. In vivo OMRI experiments are typically undertaken at ultra‐low magnetic field (ULF), as both RF power absorption and penetration issues—a consequence of the high resonance frequencies of electron spins—are mitigated. However, working at ULF causes a drastic reduction in MRI sensitivity. Here, we report on the design, construction and performance of an OMRI platform optimized for high NMR sensitivity and low RF power absorbance, exploring challenges unique to probe design in the ULF regime. We use this platform to demonstrate dynamic imaging of TEMPOL in a rat model. The work presented here demonstrates improved speed and sensitivity of in vivo OMRI, extending the scope of OMRI to the study of dynamic processes such as metabolism.
Nanodiamonds are of interest as nontoxic substrates for targeted drug delivery and as highly biostable fluorescent markers for cellular tracking. Beyond optical techniques, however, options for noninvasive imaging of nanodiamonds in vivo are severely limited. Here, we demonstrate that the Overhauser effect, a proton–electron polarization transfer technique, can enable high-contrast magnetic resonance imaging (MRI) of nanodiamonds in water at room temperature and ultra-low magnetic field. The technique transfers spin polarization from paramagnetic impurities at nanodiamond surfaces to 1 H spins in the surrounding water solution, creating MRI contrast on-demand. We examine the conditions required for maximum enhancement as well as the ultimate sensitivity of the technique. The ability to perform continuous in situ hyperpolarization via the Overhauser mechanism, in combination with the excellent in vivo stability of nanodiamond, raises the possibility of performing noninvasive in vivo tracking of nanodiamond over indefinitely long periods of time.
Nanodiamonds are of interest as nontoxic substrates for targeted drug delivery and as highly biostable fluorescent markers for cellular tracking. Beyond optical techniques however, options for noninvasive imaging of nanodiamonds in vivo are severely limited. Here, we demonstrate that the Overhauser effect, a proton-electron double resonance technique developed to detect free radicals in vivo, can enable high contrast magnetic resonance imaging (MRI) of nanodiamonds in water at room temperature and ultra-low magnetic field. The technique transfers spin polarization from paramagnetic impurities at nanodiamond surfaces to $^1$H spins in the surrounding water solution, creating MRI contrast on-demand. We further examine the conditions required for maximum enhancement as well as the ultimate sensitivity of the technique. The ability to perform continuous hyperpolarization via the Overhauser mechanism, in combination with excellent in vivo stability, raises the possibility of performing noninvasive tracking of nanodiamonds over indefinitely long periods of time.
Magnetic resonance elastography (MRE) is a powerful technique to assess the mechanical properties of living tissue. However, it suffers from reduced sensitivity in regions with short T2 and T2* such as in tissue with high concentrations of paramagnetic iron, or in regions surrounding implanted devices. In this work, we exploit the longer T2* attainable at ultra‐low magnetic fields in combination with Overhauser dynamic nuclear polarization (DNP) to enable rapid MRE at 0.0065 T. A 3D balanced steady‐state free precession based MRE sequence with undersampling and fractional encoding was implemented on a 0.0065 T MRI scanner. A custom‐built RF coil for DNP and a programmable vibration system for elastography were developed. Displacement fields and stiffness maps were reconstructed from data recorded in a polyvinyl alcohol gel phantom loaded with stable nitroxide radicals. A DNP enhancement of 25 was achieved during the MRE sequence, allowing the acquisition of 3D Overhauser‐enhanced MRE (OMRE) images with (1.5 × 2.7 × 9) mm3 resolution over eight temporal steps and 11 slices in 6 minutes. In conclusion, OMRE at ultra‐low magnetic field can be used to detect mechanical waves over short acquisition times. This new modality shows promise to broaden the scope of conventional MRE applications, and may extend the utility of low‐cost, portable MRI systems to detect elasticity changes in patients with implanted devices or iron overload. Copyright © 2016 John Wiley & Sons, Ltd.